Cyclic phosphodiesterase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 365, 627, 1110, 1146 |
| Acc65I | GGTACC | 2 cut(s) | 1154, 1707 |
| AccB1I | GGYRCC | 3 cut(s) | 921, 1154, 1707 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 717 |
| AccI | GTMKAC | 1 cut(s) | 648 |
| AciI | CCGC | 6 cut(s) | 763, 805, 1128, 1192, 1423, 1437 |
| AclWI | GGATC | 3 cut(s) | 395, 539, 1445 |
| AcoI | YGGCCR | 1 cut(s) | 494 |
| AcsI | RAATTY | 6 cut(s) | 314, 815, 887, 1004, 1430, 1658 |
| AcuI | CTGAAG | 2 cut(s) | 240, 1758 |
| AfaI | GTAC | 6 cut(s) | 661, 797, 1156, 1307, 1709, 1808 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 513, 717, 811, 1022, 1470 |
| AgeI | ACCGGT | 1 cut(s) | 335 |
| AgsI | TTSAA | 6 cut(s) | 76, 745, 1102, 1184, 1303, 1589 |
| AhlI | ACTAGT | 2 cut(s) | 110, 167 |
| AjnI | CCWGG | 2 cut(s) | 116, 309 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 966, 998 |
| Alw21I | GWGCWC | 1 cut(s) | 1056 |
| Alw26I | GTCTC | 4 cut(s) | 88, 209, 1395, 1838 |
| AlwI | GGATC | 3 cut(s) | 395, 539, 1445 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 413 |
| AoxI | GGCC | 4 cut(s) | 373, 494, 719, 1682 |
| ApeKI | GCWGC | 3 cut(s) | 641, 1652, 1773 |
| ApoI | RAATTY | 6 cut(s) | 314, 815, 887, 1004, 1430, 1658 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 630, 662 |
| AsiGI | ACCGGT | 1 cut(s) | 335 |
| Asp718I | GGTACC | 2 cut(s) | 1154, 1707 |
| AspS9I | GGNCC | 5 cut(s) | 720, 1013, 1425, 1439, 1473 |
| AsuHPI | GGTGA | 4 cut(s) | 29, 428, 433, 1006 |
| AsuII | TTCGAA | 1 cut(s) | 247 |
| AvaII | GGWCC | 4 cut(s) | 1013, 1425, 1439, 1473 |
| BaeGI | GKGCMC | 1 cut(s) | 924 |
| BalI | TGGCCA | 1 cut(s) | 496 |
| BanI | GGYRCC | 3 cut(s) | 921, 1154, 1707 |
| BanII | GRGCYC | 1 cut(s) | 1056 |
| BbsI | GAAGAC | 1 cut(s) | 967 |
| Bbv12I | GWGCWC | 1 cut(s) | 1056 |
| BbvI | GCAGC | 3 cut(s) | 653, 1639, 1785 |
| BccI | CCATC | 5 cut(s) | 266, 518, 605, 991, 1384 |
| BceAI | ACGGC | 1 cut(s) | 1448 |
| BciT130I | CCWGG | 2 cut(s) | 118, 311 |
| BciVI | GTATCC | 1 cut(s) | 317 |
| BclI | TGATCA | 1 cut(s) | 105 |
| BcoDI | GTCTC | 4 cut(s) | 88, 209, 1395, 1838 |
| BcuI | ACTAGT | 2 cut(s) | 110, 167 |
| BfaI | CTAG | 5 cut(s) | 111, 168, 303, 398, 1572 |
| BfmI | CTRYAG | 1 cut(s) | 1653 |
| BfuI | GTATCC | 1 cut(s) | 317 |
| BglII | AGATCT | 1 cut(s) | 1514 |
| BisI | GCNGC | 3 cut(s) | 642, 1653, 1774 |
| BlsI | GCNGC | 3 cut(s) | 643, 1654, 1775 |
| BmcAI | AGTACT | 1 cut(s) | 1307 |
| Bme1390I | CCNGG | 2 cut(s) | 118, 311 |
| Bme18I | GGWCC | 4 cut(s) | 1013, 1425, 1439, 1473 |
| BmgT120I | GGNCC | 5 cut(s) | 720, 1013, 1425, 1439, 1473 |
| BmiI | GGNNCC | 5 cut(s) | 923, 1065, 1156, 1474, 1709 |
| BmrFI | CCNGG | 2 cut(s) | 118, 311 |
| BmrI | ACTGGG | 1 cut(s) | 858 |
| BmsI | GCATC | 4 cut(s) | 57, 726, 790, 1776 |
| BmuI | ACTGGG | 1 cut(s) | 858 |
| BpiI | GAAGAC | 1 cut(s) | 967 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 215, 247 |
| BpmI | CTGGAG | 3 cut(s) | 576, 1505, 1662 |
| Bpu14I | TTCGAA | 1 cut(s) | 247 |
| BpuEI | CTTGAG | 2 cut(s) | 387, 1798 |
| Bsa29I | ATCGAT | 1 cut(s) | 1449 |
| BsaAI | YACGTR | 1 cut(s) | 1042 |
| BsaJI | CCNNGG | 3 cut(s) | 116, 655, 1620 |
| BsaWI | WCCGGW | 2 cut(s) | 335, 513 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 146, 176, 1616, 1646 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 513, 717, 811, 1022, 1470 |
| Bse118I | RCCGGY | 1 cut(s) | 335 |
| Bse1I | ACTGG | 4 cut(s) | 853, 1319, 1522, 1645 |
| Bse3DI | GCAATG | 1 cut(s) | 1458 |
| BseBI | CCWGG | 2 cut(s) | 118, 311 |
| BseCI | ATCGAT | 1 cut(s) | 1449 |
| BseDI | CCNNGG | 3 cut(s) | 116, 655, 1620 |
| BseGI | GGATG | 5 cut(s) | 135, 796, 859, 1006, 1765 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 513, 717, 811, 1022, 1470 |
| BseMI | GCAATG | 1 cut(s) | 1458 |
| BseNI | ACTGG | 4 cut(s) | 853, 1319, 1522, 1645 |
| BseRI | GAGGAG | 3 cut(s) | 1103, 1592, 1637 |
| BseSI | GKGCMC | 1 cut(s) | 924 |
| BseXI | GCAGC | 3 cut(s) | 653, 1639, 1785 |
| BseYI | CCCAGC | 2 cut(s) | 129, 436 |
| BshFI | GGCC | 4 cut(s) | 375, 496, 721, 1684 |
| BshNI | GGYRCC | 3 cut(s) | 921, 1154, 1707 |
| BshTI | ACCGGT | 1 cut(s) | 335 |
| BshVI | ATCGAT | 1 cut(s) | 1449 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1056 |
| BsiSI | CCGG | 2 cut(s) | 336, 514 |
| BslFI | GGGAC | 4 cut(s) | 99, 780, 839, 1129 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 513, 717, 811, 1022, 1470 |
| BsmAI | GTCTC | 4 cut(s) | 88, 209, 1395, 1838 |
| BsmFI | GGGAC | 4 cut(s) | 99, 780, 839, 1129 |
| BsnI | GGCC | 4 cut(s) | 375, 496, 721, 1684 |
| Bsp119I | TTCGAA | 1 cut(s) | 247 |
| Bsp1286I | GDGCHC | 2 cut(s) | 924, 1056 |
| Bsp1407I | TGTACA | 1 cut(s) | 1806 |
| Bsp143I | GATC | 8 cut(s) | 105, 387, 544, 678, 1071, 1446, 1450, 1514 |
| BspACI | CCGC | 6 cut(s) | 763, 805, 1128, 1192, 1423, 1437 |
| BspANI | GGCC | 4 cut(s) | 375, 496, 721, 1684 |
| BspDI | ATCGAT | 1 cut(s) | 1449 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 5 cut(s) | 923, 1065, 1156, 1474, 1709 |
| BspMAI | CTGCAG | 1 cut(s) | 1657 |
| BspPI | GGATC | 3 cut(s) | 395, 539, 1445 |
| BspQI | GCTCTTC | 1 cut(s) | 1076 |
| BspT104I | TTCGAA | 1 cut(s) | 247 |
| BspT107I | GGYRCC | 3 cut(s) | 921, 1154, 1707 |
| BsrDI | GCAATG | 1 cut(s) | 1458 |
| BsrFI | RCCGGY | 1 cut(s) | 335 |
| BsrGI | TGTACA | 1 cut(s) | 1806 |
| BsrI | ACTGG | 4 cut(s) | 853, 1319, 1522, 1645 |
| BssAI | RCCGGY | 1 cut(s) | 335 |
| BssECI | CCNNGG | 3 cut(s) | 116, 655, 1620 |
| BssMI | GATC | 8 cut(s) | 105, 387, 544, 678, 1071, 1446, 1450, 1514 |
| BssT1I | CCWWGG | 1 cut(s) | 655 |
| Bst2UI | CCWGG | 2 cut(s) | 118, 311 |
| Bst4CI | ACNGT | 4 cut(s) | 17, 380, 1068, 1806 |
| Bst6I | CTCTTC | 4 cut(s) | 216, 1076, 1315, 1716 |
| BstAUI | TGTACA | 1 cut(s) | 1806 |
| BstBAI | YACGTR | 1 cut(s) | 1042 |
| BstBI | TTCGAA | 1 cut(s) | 247 |
| BstC8I | GCNNGC | 3 cut(s) | 278, 805, 1190 |
| BstDEI | CTNAG | 2 cut(s) | 1119, 1394 |
| BstF5I | GGATG | 5 cut(s) | 135, 796, 859, 1006, 1765 |
| BstKTI | GATC | 8 cut(s) | 108, 390, 547, 681, 1074, 1449, 1453, 1517 |
| BstMAI | GTCTC | 4 cut(s) | 88, 209, 1395, 1838 |
| BstMBI | GATC | 8 cut(s) | 105, 387, 544, 678, 1071, 1446, 1450, 1514 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 286, 1773, 1779 |
| BstNI | CCWGG | 2 cut(s) | 118, 311 |
| BstNSI | RCATGY | 1 cut(s) | 1220 |
| BstSCI | CCNGG | 2 cut(s) | 116, 309 |
| BstSFI | CTRYAG | 1 cut(s) | 1653 |
| BstSLI | GKGCMC | 1 cut(s) | 924 |
| BstSNI | TACGTA | 1 cut(s) | 1042 |
| BstV1I | GCAGC | 3 cut(s) | 653, 1639, 1785 |
| BstV2I | GAAGAC | 1 cut(s) | 967 |
| BstX2I | RGATCY | 1 cut(s) | 1514 |
| BstYI | RGATCY | 1 cut(s) | 1514 |
| Bsu15I | ATCGAT | 1 cut(s) | 1449 |
| BsuI | GTATCC | 1 cut(s) | 317 |
| BsuRI | GGCC | 4 cut(s) | 375, 496, 721, 1684 |
| BsuTUI | ATCGAT | 1 cut(s) | 1449 |
| BtsCI | GGATG | 5 cut(s) | 135, 796, 859, 1006, 1765 |
| BtsIMutI | CAGTG | 3 cut(s) | 207, 376, 1802 |
| Cac8I | GCNNGC | 3 cut(s) | 278, 805, 1190 |
| CaiI | CAGNNNCTG | 1 cut(s) | 413 |
| CciI | TCATGA | 1 cut(s) | 445 |
| Cfr10I | RCCGGY | 1 cut(s) | 335 |
| Cfr13I | GGNCC | 5 cut(s) | 720, 1013, 1425, 1439, 1473 |
| ClaI | ATCGAT | 1 cut(s) | 1449 |
| CpoI | CGGWCCG | 1 cut(s) | 1425 |
| Csp6I | GTAC | 6 cut(s) | 660, 796, 1155, 1306, 1708, 1807 |
| CspAI | ACCGGT | 1 cut(s) | 335 |
| CspI | CGGWCCG | 1 cut(s) | 1425 |
| CviAII | CATG | 8 cut(s) | 148, 281, 446, 498, 770, 866, 1217, 1842 |
| CviQI | GTAC | 6 cut(s) | 660, 796, 1155, 1306, 1708, 1807 |
| DdeI | CTNAG | 2 cut(s) | 1119, 1394 |
| DpnI | GATC | 8 cut(s) | 107, 389, 546, 680, 1073, 1448, 1452, 1516 |
| DpnII | GATC | 8 cut(s) | 105, 387, 544, 678, 1071, 1446, 1450, 1514 |
| EaeI | YGGCCR | 1 cut(s) | 494 |
| Eam1104I | CTCTTC | 4 cut(s) | 216, 1076, 1315, 1716 |
| EarI | CTCTTC | 4 cut(s) | 216, 1076, 1315, 1716 |
| EciI | GGCGGA | 1 cut(s) | 1452 |
| Ecl136II | GAGCTC | 1 cut(s) | 1054 |
| Eco105I | TACGTA | 1 cut(s) | 1042 |
| Eco130I | CCWWGG | 1 cut(s) | 655 |
| Eco24I | GRGCYC | 1 cut(s) | 1056 |
| Eco47I | GGWCC | 4 cut(s) | 1013, 1425, 1439, 1473 |
| Eco53kI | GAGCTC | 1 cut(s) | 1054 |
| Eco57I | CTGAAG | 2 cut(s) | 240, 1758 |
| EcoICRI | GAGCTC | 1 cut(s) | 1054 |
| EcoRI | GAATTC | 3 cut(s) | 314, 815, 1430 |
| EcoRII | CCWGG | 2 cut(s) | 116, 309 |
| EcoT14I | CCWWGG | 1 cut(s) | 655 |
| EcoT38I | GRGCYC | 1 cut(s) | 1056 |
| ErhI | CCWWGG | 1 cut(s) | 655 |
| FaeI | CATG | 8 cut(s) | 151, 284, 449, 501, 773, 869, 1220, 1845 |
| FaqI | GGGAC | 4 cut(s) | 99, 780, 839, 1129 |
| FatI | CATG | 8 cut(s) | 147, 280, 445, 497, 769, 865, 1216, 1841 |
| FauI | CCCGC | 2 cut(s) | 756, 812 |
| FbaI | TGATCA | 1 cut(s) | 105 |
| FblI | GTMKAC | 1 cut(s) | 648 |
| Fnu4HI | GCNGC | 3 cut(s) | 642, 1653, 1774 |
| FokI | GGATG | 5 cut(s) | 122, 803, 866, 1013, 1772 |
| FriOI | GRGCYC | 1 cut(s) | 1056 |
| Fsp4HI | GCNGC | 3 cut(s) | 642, 1653, 1774 |
| FspBI | CTAG | 5 cut(s) | 111, 168, 303, 398, 1572 |
| GluI | GCNGC | 3 cut(s) | 642, 1653, 1774 |
| GsaI | CCCAGC | 2 cut(s) | 133, 440 |
| GsuI | CTGGAG | 3 cut(s) | 576, 1505, 1662 |
| HaeIII | GGCC | 4 cut(s) | 375, 496, 721, 1684 |
| HapII | CCGG | 2 cut(s) | 336, 514 |
| Hin1II | CATG | 8 cut(s) | 151, 284, 449, 501, 773, 869, 1220, 1845 |
| HincII | GTYRAC | 1 cut(s) | 1339 |
| HindII | GTYRAC | 1 cut(s) | 1339 |
| HindIII | AAGCTT | 2 cut(s) | 455, 1163 |
| HpaII | CCGG | 2 cut(s) | 336, 514 |
| HphI | GGTGA | 4 cut(s) | 29, 428, 433, 1006 |
| Hpy166II | GTNNAC | 5 cut(s) | 649, 796, 974, 1222, 1339 |
| Hpy188I | TCNGA | 8 cut(s) | 66, 105, 351, 490, 521, 549, 1381, 1621 |
| Hpy188III | TCNNGA | 9 cut(s) | 193, 446, 482, 593, 682, 733, 971, 1669, 1757 |
| Hpy8I | GTNNAC | 5 cut(s) | 649, 796, 974, 1222, 1339 |
| Hpy99I | CGWCG | 1 cut(s) | 1469 |
| HpyAV | CCTTC | 6 cut(s) | 190, 248, 488, 931, 1408, 1706 |
| HpyCH4III | ACNGT | 4 cut(s) | 17, 380, 1068, 1806 |
| HpyCH4IV | ACGT | 3 cut(s) | 184, 828, 1041 |
| HpyCH4V | TGCA | 7 cut(s) | 151, 280, 739, 1216, 1637, 1655, 1802 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 286, 1773, 1779 |
| HpyF3I | CTNAG | 2 cut(s) | 1119, 1394 |
| HpySE526I | ACGT | 3 cut(s) | 184, 828, 1041 |
| Hsp92II | CATG | 8 cut(s) | 151, 284, 449, 501, 773, 869, 1220, 1845 |
| KpnI | GGTACC | 2 cut(s) | 1158, 1711 |
| Ksp22I | TGATCA | 1 cut(s) | 105 |
| Kzo9I | GATC | 8 cut(s) | 105, 387, 544, 678, 1071, 1446, 1450, 1514 |
| LguI | GCTCTTC | 1 cut(s) | 1076 |
| LmnI | GCTCC | 3 cut(s) | 31, 595, 1059 |
| Lsp1109I | GCAGC | 3 cut(s) | 653, 1639, 1785 |
| LweI | GCATC | 4 cut(s) | 57, 726, 790, 1776 |
| MaeI | CTAG | 5 cut(s) | 111, 168, 303, 398, 1572 |
| MaeII | ACGT | 3 cut(s) | 184, 828, 1041 |
| MaeIII | GTNAC | 4 cut(s) | 380, 431, 1567, 1789 |
| MalI | GATC | 8 cut(s) | 107, 389, 546, 680, 1073, 1448, 1452, 1516 |
| MboI | GATC | 8 cut(s) | 105, 387, 544, 678, 1071, 1446, 1450, 1514 |
| MflI | RGATCY | 1 cut(s) | 1514 |
| MhlI | GDGCHC | 2 cut(s) | 924, 1056 |
| MlsI | TGGCCA | 1 cut(s) | 496 |
| MluNI | TGGCCA | 1 cut(s) | 496 |
| MlyI | GAGTC | 4 cut(s) | 340, 935, 1193, 1653 |
| Mox20I | TGGCCA | 1 cut(s) | 496 |
| MscI | TGGCCA | 1 cut(s) | 496 |
| MseI | TTAA | 8 cut(s) | 555, 573, 618, 902, 1167, 1401, 1557, 1662 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1481 |
| Msp20I | TGGCCA | 1 cut(s) | 496 |
| MspA1I | CMGCKG | 1 cut(s) | 644 |
| MspI | CCGG | 2 cut(s) | 336, 514 |
| MspR9I | CCNGG | 2 cut(s) | 118, 311 |
| MvaI | CCWGG | 2 cut(s) | 118, 311 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 286, 1773, 1779 |
| NdeII | GATC | 8 cut(s) | 105, 387, 544, 678, 1071, 1446, 1450, 1514 |
| NlaIII | CATG | 8 cut(s) | 151, 284, 449, 501, 773, 869, 1220, 1845 |
| NlaIV | GGNNCC | 5 cut(s) | 923, 1065, 1156, 1474, 1709 |
| NspI | RCATGY | 1 cut(s) | 1220 |
| NspV | TTCGAA | 1 cut(s) | 247 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PciSI | GCTCTTC | 1 cut(s) | 1076 |
| PfeI | GAWTC | 6 cut(s) | 72, 356, 485, 665, 689, 1610 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 717 |
| PfoI | TCCNGGA | 1 cut(s) | 309 |
| PinAI | ACCGGT | 1 cut(s) | 335 |
| PkrI | GCNGC | 3 cut(s) | 643, 1654, 1775 |
| PleI | GAGTC | 4 cut(s) | 340, 935, 1193, 1652 |
| PpsI | GAGTC | 4 cut(s) | 340, 935, 1193, 1652 |
| Ppu21I | YACGTR | 1 cut(s) | 1042 |
| PsiI | TTATAA | 4 cut(s) | 365, 627, 1110, 1146 |
| Psp124BI | GAGCTC | 1 cut(s) | 1056 |
| Psp6I | CCWGG | 2 cut(s) | 116, 309 |
| PspFI | CCCAGC | 2 cut(s) | 129, 436 |
| PspGI | CCWGG | 2 cut(s) | 116, 309 |
| PspN4I | GGNNCC | 5 cut(s) | 923, 1065, 1156, 1474, 1709 |
| PspPI | GGNCC | 5 cut(s) | 720, 1013, 1425, 1439, 1473 |
| PstI | CTGCAG | 1 cut(s) | 1657 |
| PstNI | CAGNNNCTG | 1 cut(s) | 413 |
| PsuI | RGATCY | 1 cut(s) | 1514 |
| PvuII | CAGCTG | 1 cut(s) | 644 |
| RsaI | GTAC | 6 cut(s) | 661, 797, 1156, 1307, 1709, 1808 |
| RsaNI | GTAC | 6 cut(s) | 660, 796, 1155, 1306, 1708, 1807 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1481 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1425 |
| RsrII | CGGWCCG | 1 cut(s) | 1425 |
| SacI | GAGCTC | 1 cut(s) | 1056 |
| SapI | GCTCTTC | 1 cut(s) | 1076 |
| SaqAI | TTAA | 8 cut(s) | 555, 573, 618, 902, 1167, 1401, 1557, 1662 |
| SatI | GCNGC | 3 cut(s) | 642, 1653, 1774 |
| Sau3AI | GATC | 8 cut(s) | 105, 387, 544, 678, 1071, 1446, 1450, 1514 |
| Sau96I | GGNCC | 5 cut(s) | 720, 1013, 1425, 1439, 1473 |
| ScaI | AGTACT | 1 cut(s) | 1307 |
| SchI | GAGTC | 4 cut(s) | 340, 935, 1193, 1653 |
| ScrFI | CCNGG | 2 cut(s) | 118, 311 |
| SduI | GDGCHC | 2 cut(s) | 924, 1056 |
| SfaNI | GCATC | 4 cut(s) | 57, 726, 790, 1776 |
| SfcI | CTRYAG | 1 cut(s) | 1653 |
| SfuI | TTCGAA | 1 cut(s) | 247 |
| SinI | GGWCC | 4 cut(s) | 1013, 1425, 1439, 1473 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1481 |
| SmlI | CTYRAG | 2 cut(s) | 402, 1777 |
| SmoI | CTYRAG | 2 cut(s) | 402, 1777 |
| SnaBI | TACGTA | 1 cut(s) | 1042 |
| SpeI | ACTAGT | 2 cut(s) | 110, 167 |
| SsiI | CCGC | 6 cut(s) | 763, 805, 1128, 1192, 1423, 1437 |
| SspMI | CTAG | 5 cut(s) | 111, 168, 303, 398, 1572 |
| SstI | GAGCTC | 1 cut(s) | 1056 |
| StyD4I | CCNGG | 2 cut(s) | 116, 309 |
| StyI | CCWWGG | 1 cut(s) | 655 |
| TaaI | ACNGT | 4 cut(s) | 17, 380, 1068, 1806 |
| TaiI | ACGT | 3 cut(s) | 187, 831, 1044 |
| TaqI | TCGA | 3 cut(s) | 247, 1449, 1795 |
| TaqII | GACCGA | 1 cut(s) | 1442 |
| TatI | WGTACW | 2 cut(s) | 1305, 1806 |
| TfiI | GAWTC | 6 cut(s) | 72, 356, 485, 665, 689, 1610 |
| Tru1I | TTAA | 8 cut(s) | 555, 573, 618, 902, 1167, 1401, 1557, 1662 |
| Tru9I | TTAA | 8 cut(s) | 555, 573, 618, 902, 1167, 1401, 1557, 1662 |
| TscAI | CASTG | 3 cut(s) | 214, 383, 1809 |
| TseI | GCWGC | 3 cut(s) | 641, 1652, 1773 |
| TspGWI | ACGGA | 1 cut(s) | 315 |
| TspRI | CASTG | 3 cut(s) | 214, 383, 1809 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 717 |
| VpaK11BI | GGWCC | 4 cut(s) | 1013, 1425, 1439, 1473 |
| XapI | RAATTY | 6 cut(s) | 314, 815, 887, 1004, 1430, 1658 |
| XceI | RCATGY | 1 cut(s) | 1220 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 489 |
| XmiI | GTMKAC | 1 cut(s) | 648 |
| XspI | CTAG | 5 cut(s) | 111, 168, 303, 398, 1572 |
| ZrmI | AGTACT | 1 cut(s) | 1307 |