Rroxscaffold_7G00188810

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000046
Physical Location & Seq
Reverse (-)
28559086 .. 28560312
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188810.1

Sequence Viewer

Length: 1227 bp
ATGCATAATAATCCGTCCACCTCCGTCTTTATAAAGCGTTTGGTTGTTAATGAGGACACAAAGGAAAGCGAGACTGTGTTCTCGCTGCTTAGTTTTTCCAATTGTAGTGATGATGATAGTAATGATGGTGGCGAGCCTGCTAGCTTTCTTTTGGGTGTCGAGGATATGGAGATTCCATTCCCAATGACTAGTCTAGACACCAATAGGGGCGAATCACTTGAAATTGTAGGCCATTGTAATGGGATCATATGTCTGAGTATTTCTCGCTCTACCAAGGTGTTTTTATGGAACCCGGCAATTAGAGAATTCAAGCTTCTACCCCCGGAACCATACCTTCCACATTGGACCAGAACATGCTCAACCGCGGCGGATTATCCCAAAGATGTTGTTACCATGCCATTTTTCTCAGACGATCCGGTGTTCGGCTATGATCCTCTATTGCAAGATTACAAAGTTGTCGAGATTGGATTTCAAGGAGCATATCGTGAGGAAGATAATTATGTTTTTCATCCTCCCCTAGCTGCGGTATACACCCGGGGCACTAATTCCTGGAGAGAGATCAGTACTGATTCTTTAGAAACAGAAACTACTAACCTATGGCCTGGAAATTTCCAAATGTTCTTCAACGGGATGTGTTATTGGTTGGGAAGAGAGCAATTGAAGGAAGGCAGTATTTATGATTACATGGAAGAGGAATATGTTAGGAAATTGATCATTTCGTTTGACATGAGTCGTGAAGTATTTCATGACATACTGCTACCATATGAGTTGATTAACCCTCCATGCATCACTGTGTGGAAGGAATCTATTGCTCTTTTTAATTTGCATGATAGTGATGATGCAGATTCTTCAAATCTTTTGCCTTATAGTGATGCTTCAGATGCTGCTAAATTTGAATGTTTGGATATATGGGTGATGGATGGCTTTGCTGGTGTTGGATATTCTTGGACAAAACACTTAACTCTTGAGCTCAGAGAACACCCATCTCAGAGCATATCGTCATTCTGGTGGGATCAGACCACATTAGTGATGTGGAACCATGAACTTCTCATGGTGTCCCCAAATAGATCTATAGTGTGTTATAATCTAAGTTCCAGAAGGCTTAAGTATCTACCAATCCAAAGCGGCTCAAAGGATCGTGAAGCTGTTGCTGTTGTTTATCTAAACAGTATAGTTTCGGTCGTGGGAGACAAGAAGCTTCAGAGCAGAGAACATGTAGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

408

Amino Acids

46.7

Weight (kDa)

4.65

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 63 - 380 1.9e-11 F-box associated beta propeller domain
FBA_1 PF07734 65 - 394 7.7e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 32, 1083
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 365
AciI CCGC 5 cut(s) 363, 365, 368, 524, 1125
AclWI GGATC 5 cut(s) 251, 407, 425, 1020, 1143
AcsI RAATTY 3 cut(s) 305, 607, 890
AcuI CTGAAG 2 cut(s) 861, 1184
AdeI CACNNNGTG 1 cut(s) 795
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 2 cut(s) 422, 523
AflII CTTAAG 1 cut(s) 1103
AflIII ACRYGT 1 cut(s) 1213
AgsI TTSAA 7 cut(s) 221, 310, 473, 625, 661, 852, 896
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 2 cut(s) 548, 601
AleI CACNNNNGTG 1 cut(s) 1025
AluBI AGCT 6 cut(s) 144, 313, 521, 970, 1145, 1198
AluI AGCT 6 cut(s) 144, 313, 521, 970, 1145, 1198
Alw21I GWGCWC 1 cut(s) 972
Alw26I GTCTC 2 cut(s) 65, 1182
AlwI GGATC 5 cut(s) 251, 407, 425, 1020, 1143
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 2 cut(s) 229, 599
ApeKI GCWGC 3 cut(s) 85, 521, 884
ApoI RAATTY 3 cut(s) 305, 607, 890
Asp700I GAANNNNTTC 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 345
AsuC2I CCSGG 4 cut(s) 293, 323, 535, 536
AsuHPI GGTGA 1 cut(s) 925
AsuNHI GCTAGC 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 542
BanII GRGCYC 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 972
BbvI GCAGC 3 cut(s) 72, 508, 871
BccI CCATC 4 cut(s) 119, 910, 914, 991
BciT130I CCWGG 2 cut(s) 550, 603
BclI TGATCA 1 cut(s) 711
BcnI CCSGG 4 cut(s) 293, 323, 535, 536
BcoDI GTCTC 2 cut(s) 65, 1182
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 4 cut(s) 141, 189, 194, 518
BfmI CTRYAG 1 cut(s) 1071
BfrI CTTAAG 1 cut(s) 1103
BglII AGATCT 1 cut(s) 1067
BisI GCNGC 5 cut(s) 86, 366, 522, 885, 1126
BlsI GCNGC 5 cut(s) 87, 367, 523, 886, 1127
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 6 cut(s) 293, 323, 535, 536, 550, 603
Bme18I GGWCC 1 cut(s) 345
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 3 cut(s) 290, 327, 1037
BmrFI CCNGG 6 cut(s) 293, 323, 535, 536, 550, 603
BmsI GCATC 4 cut(s) 795, 829, 862, 871
BmtI GCTAGC 1 cut(s) 144
BoxI GACNNNNGTC 1 cut(s) 729
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BpmI CTGGAG 1 cut(s) 571
BpuEI CTTGAG 1 cut(s) 986
BpuMI CCSGG 4 cut(s) 293, 323, 535, 536
BsaJI CCNNGG 5 cut(s) 273, 321, 363, 534, 535
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 523
Bse3DI GCAATG 1 cut(s) 1227
BseBI CCWGG 2 cut(s) 550, 603
BseDI CCNNGG 5 cut(s) 273, 321, 363, 534, 535
BseGI GGATG 3 cut(s) 508, 636, 925
BseLI CCNNNNNNNGG 2 cut(s) 422, 523
BseMI GCAATG 1 cut(s) 1227
BseMII CTCAG 4 cut(s) 245, 420, 985, 1001
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 3 cut(s) 72, 508, 871
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 1182
BshFI GGCC 2 cut(s) 231, 601
BsiEI CGRYCG 1 cut(s) 1182
BsiHKAI GWGCWC 1 cut(s) 972
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 4 cut(s) 293, 323, 416, 535
BslFI GGGAC 1 cut(s) 1042
BslI CCNNNNNNNGG 2 cut(s) 422, 523
BsmAI GTCTC 2 cut(s) 65, 1182
BsmFI GGGAC 1 cut(s) 1042
BsnI GGCC 2 cut(s) 231, 601
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 2 cut(s) 542, 972
Bsp143I GATC 8 cut(s) 243, 412, 430, 558, 711, 1012, 1067, 1135
BspACI CCGC 5 cut(s) 363, 365, 368, 524, 1125
BspANI GGCC 2 cut(s) 231, 601
BspCNI CTCAG 4 cut(s) 246, 419, 984, 1000
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 3 cut(s) 290, 327, 1037
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 5 cut(s) 251, 407, 425, 1020, 1143
BspTI CTTAAG 1 cut(s) 1103
BsrDI GCAATG 1 cut(s) 1227
BssECI CCNNGG 5 cut(s) 273, 321, 363, 534, 535
BssMI GATC 8 cut(s) 243, 412, 430, 558, 711, 1012, 1067, 1135
BssNAI GTATAC 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 529
Bst2UI CCWGG 2 cut(s) 550, 603
Bst4CI ACNGT 3 cut(s) 76, 793, 1169
Bst6I CTCTTC 2 cut(s) 643, 684
BstAFI CTTAAG 1 cut(s) 1103
BstC8I GCNNGC 3 cut(s) 134, 138, 142
BstDEI CTNAG 6 cut(s) 89, 254, 406, 971, 987, 1088
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 3 cut(s) 508, 636, 925
BstFNI CGCG 1 cut(s) 365
BstKTI GATC 8 cut(s) 246, 415, 433, 561, 714, 1015, 1070, 1138
BstMAI GTCTC 2 cut(s) 65, 1182
BstMBI GATC 8 cut(s) 243, 412, 430, 558, 711, 1012, 1067, 1135
BstMCI CGRYCG 1 cut(s) 1182
BstMWI GCNNNNNNNGC 1 cut(s) 881
BstNI CCWGG 2 cut(s) 550, 603
BstNSI RCATGY 2 cut(s) 357, 1217
BstPAI GACNNNNGTC 1 cut(s) 729
BstSCI CCNGG 6 cut(s) 291, 321, 533, 534, 548, 601
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 72, 508, 871
BstX2I RGATCY 1 cut(s) 1067
BstXI CCANNNNNNTGG 1 cut(s) 239
BstYI RGATCY 1 cut(s) 1067
BstZ17I GTATAC 1 cut(s) 529
BsuRI GGCC 2 cut(s) 231, 601
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 3 cut(s) 508, 636, 925
BtsIMutI CAGTG 1 cut(s) 789
Cac8I GCNNGC 3 cut(s) 134, 138, 142
CaiI CAGNNNCTG 1 cut(s) 884
CciI TCATGA 1 cut(s) 745
Cfr13I GGNCC 1 cut(s) 345
Cfr42I CCGCGG 1 cut(s) 366
Cfr9I CCCGGG 1 cut(s) 534
Csp6I GTAC 1 cut(s) 564
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 6 cut(s) 89, 254, 406, 971, 987, 1088
DpnI GATC 8 cut(s) 245, 414, 432, 560, 713, 1014, 1069, 1137
DpnII GATC 8 cut(s) 243, 412, 430, 558, 711, 1012, 1067, 1135
DraIII CACNNNGTG 1 cut(s) 795
Eam1104I CTCTTC 2 cut(s) 643, 684
EarI CTCTTC 2 cut(s) 643, 684
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 970
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 970
Eco57I CTGAAG 2 cut(s) 861, 1184
Eco88I CYCGRG 1 cut(s) 534
EcoICRI GAGCTC 1 cut(s) 970
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 548, 601
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 2 cut(s) 6, 788
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 1 cut(s) 273
FaqI GGGAC 1 cut(s) 1042
FauNDI CATATG 2 cut(s) 248, 763
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 5 cut(s) 86, 366, 522, 885, 1126
FokI GGATG 3 cut(s) 495, 643, 932
FriOI GRGCYC 1 cut(s) 972
Fsp4HI GCNGC 5 cut(s) 86, 366, 522, 885, 1126
FspBI CTAG 4 cut(s) 141, 189, 194, 518
GluI GCNGC 5 cut(s) 86, 366, 522, 885, 1126
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 2 cut(s) 231, 601
HapII CCGG 4 cut(s) 293, 323, 416, 535
HindIII AAGCTT 2 cut(s) 311, 1196
HinfI GANTC 6 cut(s) 172, 212, 569, 730, 803, 845
HpaII CCGG 4 cut(s) 293, 323, 416, 535
HphI GGTGA 1 cut(s) 925
Hpy166II GTNNAC 2 cut(s) 18, 529
Hpy188I TCNGA 7 cut(s) 255, 409, 880, 974, 990, 1017, 1203
Hpy188III TCNNGA 8 cut(s) 194, 460, 485, 734, 746, 965, 1095, 1139
Hpy8I GTNNAC 2 cut(s) 18, 529
HpyAV CCTTC 5 cut(s) 344, 655, 659, 793, 1092
HpyCH4III ACNGT 3 cut(s) 76, 793, 1169
HpyCH4V TGCA 5 cut(s) 4, 442, 786, 826, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 881
HpyF3I CTNAG 6 cut(s) 89, 254, 406, 971, 987, 1088
Ksp22I TGATCA 1 cut(s) 711
KspI CCGCGG 1 cut(s) 366
Kzo9I GATC 8 cut(s) 243, 412, 430, 558, 711, 1012, 1067, 1135
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 3 cut(s) 72, 508, 871
LweI GCATC 4 cut(s) 795, 829, 862, 871
MaeI CTAG 4 cut(s) 141, 189, 194, 518
MaeIII GTNAC 1 cut(s) 388
MalI GATC 8 cut(s) 245, 414, 432, 560, 713, 1014, 1069, 1137
MboI GATC 8 cut(s) 243, 412, 430, 558, 711, 1012, 1067, 1135
MboII GAAGA 5 cut(s) 503, 613, 660, 701, 840
MfeI CAATTG 2 cut(s) 100, 656
MflI RGATCY 1 cut(s) 1067
MhlI GDGCHC 2 cut(s) 542, 972
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 916
MnlI CCTC 8 cut(s) 31, 46, 154, 444, 481, 522, 685, 789
Mph1103I ATGCAT 2 cut(s) 6, 788
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 5 cut(s) 48, 774, 819, 959, 1104
MslI CAYNNNNRTG 5 cut(s) 237, 791, 831, 1006, 1025
MspA1I CMGCKG 1 cut(s) 365
MspCI CTTAAG 1 cut(s) 1103
MspI CCGG 4 cut(s) 293, 323, 416, 535
MspR9I CCNGG 6 cut(s) 293, 323, 535, 536, 550, 603
MunI CAATTG 2 cut(s) 100, 656
MvaI CCWGG 2 cut(s) 550, 603
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 881
NciI CCSGG 4 cut(s) 293, 323, 535, 536
NdeI CATATG 2 cut(s) 248, 763
NdeII GATC 8 cut(s) 243, 412, 430, 558, 711, 1012, 1067, 1135
NheI GCTAGC 1 cut(s) 140
NlaIV GGNNCC 3 cut(s) 290, 327, 1037
NsiI ATGCAT 2 cut(s) 6, 788
NspI RCATGY 2 cut(s) 357, 1217
OliI CACNNNNGTG 1 cut(s) 1025
PagI TCATGA 1 cut(s) 745
PciI ACATGT 1 cut(s) 1213
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 5 cut(s) 172, 212, 569, 803, 845
PfoI TCCNGGA 1 cut(s) 548
PkrI GCNGC 5 cut(s) 87, 367, 523, 886, 1127
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
PscI ACATGT 1 cut(s) 1213
PshAI GACNNNNGTC 1 cut(s) 729
PsiI TTATAA 2 cut(s) 32, 1083
Psp124BI GAGCTC 1 cut(s) 972
Psp6I CCWGG 2 cut(s) 548, 601
PspGI CCWGG 2 cut(s) 548, 601
PspN4I GGNNCC 3 cut(s) 290, 327, 1037
PspPI GGNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 1 cut(s) 1067
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
RseI CAYNNNNRTG 5 cut(s) 237, 791, 831, 1006, 1025
SacI GAGCTC 1 cut(s) 972
SacII CCGCGG 1 cut(s) 366
SaqAI TTAA 5 cut(s) 48, 774, 819, 959, 1104
SatI GCNGC 5 cut(s) 86, 366, 522, 885, 1126
Sau3AI GATC 8 cut(s) 243, 412, 430, 558, 711, 1012, 1067, 1135
Sau96I GGNCC 1 cut(s) 345
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 6 cut(s) 293, 323, 535, 536, 550, 603
SduI GDGCHC 2 cut(s) 542, 972
SfaNI GCATC 4 cut(s) 795, 829, 862, 871
SfcI CTRYAG 1 cut(s) 1071
Sfr303I CCGCGG 1 cut(s) 366
SgrBI CCGCGG 1 cut(s) 366
SinI GGWCC 1 cut(s) 345
SmaI CCCGGG 1 cut(s) 536
SmiMI CAYNNNNRTG 5 cut(s) 237, 791, 831, 1006, 1025
SmlI CTYRAG 2 cut(s) 965, 1103
SmoI CTYRAG 2 cut(s) 965, 1103
SpeI ACTAGT 1 cut(s) 188
SsiI CCGC 5 cut(s) 363, 365, 368, 524, 1125
SspMI CTAG 4 cut(s) 141, 189, 194, 518
SstI GAGCTC 1 cut(s) 972
StyD4I CCNGG 6 cut(s) 291, 321, 533, 534, 548, 601
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 76, 793, 1169
TaqI TCGA 2 cut(s) 159, 459
TaqII GACCGA 1 cut(s) 1168
TatI WGTACW 1 cut(s) 563
TauI GCSGC 2 cut(s) 368, 1128
TfiI GAWTC 5 cut(s) 172, 212, 569, 803, 845
Tru1I TTAA 5 cut(s) 48, 774, 819, 959, 1104
Tru9I TTAA 5 cut(s) 48, 774, 819, 959, 1104
TscAI CASTG 1 cut(s) 796
TseI GCWGC 3 cut(s) 85, 521, 884
TspDTI ATGAA 3 cut(s) 497, 734, 1056
TspGWI ACGGA 1 cut(s) 13
TspMI CCCGGG 1 cut(s) 534
TspRI CASTG 1 cut(s) 796
Vha464I CTTAAG 1 cut(s) 1103
VpaK11BI GGWCC 1 cut(s) 345
XapI RAATTY 3 cut(s) 305, 607, 890
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 2 cut(s) 357, 1217
XmaI CCCGGG 1 cut(s) 534
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 4 cut(s) 141, 189, 194, 518
ZrmI AGTACT 1 cut(s) 565
Zsp2I ATGCAT 2 cut(s) 6, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.