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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 484, 540, 589 |
| AclI | AACGTT | 1 cut(s) | 165 |
| AclWI | GGATC | 3 cut(s) | 426, 576, 653 |
| AcoI | YGGCCR | 1 cut(s) | 636 |
| AfaI | GTAC | 2 cut(s) | 171, 536 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 260, 613 |
| AgsI | TTSAA | 5 cut(s) | 68, 236, 259, 367, 672 |
| AhlI | ACTAGT | 1 cut(s) | 407 |
| AjiI | CACGTC | 1 cut(s) | 302 |
| AjnI | CCWGG | 1 cut(s) | 295 |
| AluBI | AGCT | 5 cut(s) | 292, 317, 397, 452, 628 |
| AluI | AGCT | 5 cut(s) | 292, 317, 397, 452, 628 |
| Alw21I | GWGCWC | 1 cut(s) | 294 |
| AlwI | GGATC | 3 cut(s) | 426, 576, 653 |
| AoxI | GGCC | 3 cut(s) | 277, 460, 636 |
| ApeKI | GCWGC | 1 cut(s) | 394 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 209, 241 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 219 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AsuHPI | GGTGA | 1 cut(s) | 218 |
| BanII | GRGCYC | 2 cut(s) | 294, 579 |
| BbsI | GAAGAC | 2 cut(s) | 222, 243 |
| Bbv12I | GWGCWC | 1 cut(s) | 294 |
| BbvI | GCAGC | 1 cut(s) | 406 |
| BccI | CCATC | 3 cut(s) | 57, 106, 383 |
| BceAI | ACGGC | 3 cut(s) | 340, 553, 623 |
| BciT130I | CCWGG | 1 cut(s) | 297 |
| BcuI | ACTAGT | 1 cut(s) | 407 |
| BfaI | CTAG | 4 cut(s) | 188, 273, 344, 408 |
| BfmI | CTRYAG | 1 cut(s) | 312 |
| BisI | GCNGC | 1 cut(s) | 395 |
| BlsI | GCNGC | 1 cut(s) | 396 |
| Bme1390I | CCNGG | 1 cut(s) | 297 |
| BmgBI | CACGTC | 1 cut(s) | 302 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 1 cut(s) | 278 |
| BmrFI | CCNGG | 1 cut(s) | 297 |
| BpiI | GAAGAC | 2 cut(s) | 222, 243 |
| BsaJI | CCNNGG | 1 cut(s) | 295 |
| BsaWI | WCCGGW | 1 cut(s) | 415 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 507, 537 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 260, 613 |
| Bse3DI | GCAATG | 2 cut(s) | 43, 163 |
| BseBI | CCWGG | 1 cut(s) | 297 |
| BseDI | CCNNGG | 1 cut(s) | 295 |
| BseGI | GGATG | 2 cut(s) | 135, 394 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 260, 613 |
| BseMI | GCAATG | 2 cut(s) | 43, 163 |
| BseMII | CTCAG | 2 cut(s) | 154, 520 |
| BseXI | GCAGC | 1 cut(s) | 406 |
| BseYI | CCCAGC | 1 cut(s) | 452 |
| Bsh1285I | CGRYCG | 1 cut(s) | 593 |
| BshFI | GGCC | 3 cut(s) | 279, 462, 638 |
| BsiEI | CGRYCG | 1 cut(s) | 593 |
| BsiHKAI | GWGCWC | 1 cut(s) | 294 |
| BsiSI | CCGG | 1 cut(s) | 416 |
| BslFI | GGGAC | 2 cut(s) | 479, 588 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 260, 613 |
| BsmFI | GGGAC | 2 cut(s) | 479, 588 |
| BsnI | GGCC | 3 cut(s) | 279, 462, 638 |
| Bsp1286I | GDGCHC | 2 cut(s) | 294, 579 |
| Bsp143I | GATC | 5 cut(s) | 418, 499, 568, 645, 661 |
| BspACI | CCGC | 3 cut(s) | 484, 540, 589 |
| BspANI | GGCC | 3 cut(s) | 279, 462, 638 |
| BspCNI | CTCAG | 2 cut(s) | 153, 519 |
| BspLI | GGNNCC | 1 cut(s) | 278 |
| BspPI | GGATC | 3 cut(s) | 426, 576, 653 |
| BsrDI | GCAATG | 2 cut(s) | 43, 163 |
| BssECI | CCNNGG | 1 cut(s) | 295 |
| BssMI | GATC | 5 cut(s) | 418, 499, 568, 645, 661 |
| Bst2UI | CCWGG | 1 cut(s) | 297 |
| Bst4CI | ACNGT | 1 cut(s) | 428 |
| BstC8I | GCNNGC | 1 cut(s) | 482 |
| BstDEI | CTNAG | 3 cut(s) | 140, 506, 599 |
| BstF5I | GGATG | 2 cut(s) | 135, 394 |
| BstKTI | GATC | 5 cut(s) | 421, 502, 571, 648, 664 |
| BstMBI | GATC | 5 cut(s) | 418, 499, 568, 645, 661 |
| BstMCI | CGRYCG | 1 cut(s) | 593 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 153, 595 |
| BstNI | CCWGG | 1 cut(s) | 297 |
| BstSCI | CCNGG | 1 cut(s) | 295 |
| BstSFI | CTRYAG | 1 cut(s) | 312 |
| BstV1I | GCAGC | 1 cut(s) | 406 |
| BstV2I | GAAGAC | 2 cut(s) | 222, 243 |
| BstX2I | RGATCY | 2 cut(s) | 568, 645 |
| BstYI | RGATCY | 2 cut(s) | 568, 645 |
| BsuRI | GGCC | 3 cut(s) | 279, 462, 638 |
| BtrI | CACGTC | 1 cut(s) | 302 |
| BtsCI | GGATG | 2 cut(s) | 135, 394 |
| BtsI | GCAGTG | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 2 cut(s) | 108, 433 |
| Cac8I | GCNNGC | 1 cut(s) | 482 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| CseI | GACGC | 1 cut(s) | 116 |
| Csp6I | GTAC | 2 cut(s) | 170, 535 |
| CviQI | GTAC | 2 cut(s) | 170, 535 |
| DdeI | CTNAG | 3 cut(s) | 140, 506, 599 |
| DpnI | GATC | 5 cut(s) | 420, 501, 570, 647, 663 |
| DpnII | GATC | 5 cut(s) | 418, 499, 568, 645, 661 |
| EaeI | YGGCCR | 1 cut(s) | 636 |
| EciI | GGCGGA | 1 cut(s) | 555 |
| Ecl136II | GAGCTC | 1 cut(s) | 292 |
| Eco147I | AGGCCT | 1 cut(s) | 462 |
| Eco24I | GRGCYC | 2 cut(s) | 294, 579 |
| Eco53kI | GAGCTC | 1 cut(s) | 292 |
| EcoICRI | GAGCTC | 1 cut(s) | 292 |
| EcoRII | CCWGG | 1 cut(s) | 295 |
| EcoT38I | GRGCYC | 2 cut(s) | 294, 579 |
| FaiI | YATR | 4 cut(s) | 178, 198, 466, 632 |
| FaqI | GGGAC | 2 cut(s) | 479, 588 |
| Fnu4HI | GCNGC | 1 cut(s) | 395 |
| FokI | GGATG | 2 cut(s) | 122, 401 |
| FriOI | GRGCYC | 2 cut(s) | 294, 579 |
| Fsp4HI | GCNGC | 1 cut(s) | 395 |
| FspBI | CTAG | 4 cut(s) | 188, 273, 344, 408 |
| GluI | GCNGC | 1 cut(s) | 395 |
| GsaI | CCCAGC | 1 cut(s) | 456 |
| HaeIII | GGCC | 3 cut(s) | 279, 462, 638 |
| HapII | CCGG | 1 cut(s) | 416 |
| HgaI | GACGC | 1 cut(s) | 116 |
| HindIII | AAGCTT | 1 cut(s) | 626 |
| HinfI | GANTC | 1 cut(s) | 308 |
| HpaII | CCGG | 1 cut(s) | 416 |
| HphI | GGTGA | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 1 cut(s) | 413 |
| Hpy188I | TCNGA | 4 cut(s) | 143, 388, 423, 509 |
| Hpy188III | TCNNGA | 1 cut(s) | 188 |
| Hpy8I | GTNNAC | 1 cut(s) | 413 |
| Hpy99I | CGWCG | 2 cut(s) | 379, 388 |
| HpyAV | CCTTC | 3 cut(s) | 124, 230, 452 |
| HpyCH4III | ACNGT | 1 cut(s) | 428 |
| HpyCH4IV | ACGT | 2 cut(s) | 165, 301 |
| HpyCH4V | TGCA | 2 cut(s) | 38, 526 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 153, 595 |
| HpyF3I | CTNAG | 3 cut(s) | 140, 506, 599 |
| HpySE526I | ACGT | 2 cut(s) | 165, 301 |
| Kzo9I | GATC | 5 cut(s) | 418, 499, 568, 645, 661 |
| LmnI | GCTCC | 2 cut(s) | 297, 322 |
| LpnPI | CCDG | 7 cut(s) | 282, 309, 429, 438, 466, 599, 650 |
| Lsp1109I | GCAGC | 1 cut(s) | 406 |
| MaeI | CTAG | 4 cut(s) | 188, 273, 344, 408 |
| MaeII | ACGT | 2 cut(s) | 165, 301 |
| MaeIII | GTNAC | 1 cut(s) | 57 |
| MalI | GATC | 5 cut(s) | 420, 501, 570, 647, 663 |
| MboI | GATC | 5 cut(s) | 418, 499, 568, 645, 661 |
| MboII | GAAGA | 8 cut(s) | 9, 12, 71, 93, 173, 227, 239, 248 |
| MflI | RGATCY | 2 cut(s) | 568, 645 |
| MhlI | GDGCHC | 2 cut(s) | 294, 579 |
| MluCI | AATT | 4 cut(s) | 281, 361, 443, 672 |
| MmeI | TCCRAC | 1 cut(s) | 366 |
| MnlI | CCTC | 9 cut(s) | 115, 128, 149, 251, 503, 509, 536, 559, 636 |
| MroXI | GAANNNNTTC | 1 cut(s) | 219 |
| MseI | TTAA | 1 cut(s) | 446 |
| MspI | CCGG | 1 cut(s) | 416 |
| MspR9I | CCNGG | 1 cut(s) | 297 |
| MvaI | CCWGG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 153, 595 |
| NdeII | GATC | 5 cut(s) | 418, 499, 568, 645, 661 |
| NlaIV | GGNNCC | 1 cut(s) | 278 |
| NmuCI | GTSAC | 1 cut(s) | 57 |
| PceI | AGGCCT | 1 cut(s) | 462 |
| PdmI | GAANNNNTTC | 1 cut(s) | 219 |
| PfeI | GAWTC | 1 cut(s) | 308 |
| PkrI | GCNGC | 1 cut(s) | 396 |
| Psp124BI | GAGCTC | 1 cut(s) | 294 |
| Psp1406I | AACGTT | 1 cut(s) | 165 |
| Psp6I | CCWGG | 1 cut(s) | 295 |
| PspFI | CCCAGC | 1 cut(s) | 452 |
| PspGI | CCWGG | 1 cut(s) | 295 |
| PspN4I | GGNNCC | 1 cut(s) | 278 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PsuI | RGATCY | 2 cut(s) | 568, 645 |
| RsaI | GTAC | 2 cut(s) | 171, 536 |
| RsaNI | GTAC | 2 cut(s) | 170, 535 |
| SacI | GAGCTC | 1 cut(s) | 294 |
| SaqAI | TTAA | 1 cut(s) | 446 |
| SatI | GCNGC | 1 cut(s) | 395 |
| Sau3AI | GATC | 5 cut(s) | 418, 499, 568, 645, 661 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| ScrFI | CCNGG | 1 cut(s) | 297 |
| SduI | GDGCHC | 2 cut(s) | 294, 579 |
| SfcI | CTRYAG | 1 cut(s) | 312 |
| SpeI | ACTAGT | 1 cut(s) | 407 |
| Sse9I | AATT | 4 cut(s) | 281, 361, 443, 672 |
| SseBI | AGGCCT | 1 cut(s) | 462 |
| SsiI | CCGC | 3 cut(s) | 484, 540, 589 |
| SspMI | CTAG | 4 cut(s) | 188, 273, 344, 408 |
| SstI | GAGCTC | 1 cut(s) | 294 |
| StuI | AGGCCT | 1 cut(s) | 462 |
| StyD4I | CCNGG | 1 cut(s) | 295 |
| TaaI | ACNGT | 1 cut(s) | 428 |
| TaiI | ACGT | 2 cut(s) | 168, 304 |
| TaqI | TCGA | 1 cut(s) | 660 |
| TasI | AATT | 4 cut(s) | 281, 361, 443, 672 |
| TatI | WGTACW | 1 cut(s) | 169 |
| TfiI | GAWTC | 1 cut(s) | 308 |
| Tru1I | TTAA | 1 cut(s) | 446 |
| Tru9I | TTAA | 1 cut(s) | 446 |
| TscAI | CASTG | 2 cut(s) | 115, 433 |
| TseFI | GTSAC | 1 cut(s) | 57 |
| TseI | GCWGC | 1 cut(s) | 394 |
| Tsp45I | GTSAC | 1 cut(s) | 57 |
| TspDTI | ATGAA | 4 cut(s) | 12, 165, 212, 641 |
| TspRI | CASTG | 2 cut(s) | 115, 433 |
| XbaI | TCTAGA | 1 cut(s) | 187 |
| XmnI | GAANNNNTTC | 1 cut(s) | 219 |
| XspI | CTAG | 4 cut(s) | 188, 273, 344, 408 |