Belongs to the AAA ATPase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Vps54 | PF07928 | 769 - 899 | 8.3e-47 | Vps54-like protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1799, 2643, 2879 |
| Acc36I | ACCTGC | 3 cut(s) | 861, 2464, 2820 |
| AccB1I | GGYRCC | 3 cut(s) | 449, 1493, 2465 |
| AccBSI | CCGCTC | 1 cut(s) | 462 |
| AccI | GTMKAC | 3 cut(s) | 690, 889, 2177 |
| AccII | CGCG | 1 cut(s) | 402 |
| AclWI | GGATC | 3 cut(s) | 63, 258, 921 |
| AcoI | YGGCCR | 3 cut(s) | 370, 1528, 2026 |
| AcsI | RAATTY | 9 cut(s) | 91, 962, 1961, 2221, 2415, 2423, 2568, 2895, 3047 |
| AcuI | CTGAAG | 2 cut(s) | 1428, 2507 |
| AcyI | GRCGYC | 3 cut(s) | 450, 483, 1494 |
| AdeI | CACNNNGTG | 1 cut(s) | 550 |
| AfaI | GTAC | 7 cut(s) | 1398, 2038, 2291, 2382, 2586, 3022, 3057 |
| AflII | CTTAAG | 1 cut(s) | 653 |
| AflIII | ACRYGT | 2 cut(s) | 2441, 2818 |
| AjiI | CACGTC | 2 cut(s) | 334, 532 |
| AjnI | CCWGG | 8 cut(s) | 173, 182, 372, 504, 546, 725, 1270, 2016 |
| Alw21I | GWGCWC | 2 cut(s) | 717, 1735 |
| Alw26I | GTCTC | 4 cut(s) | 401, 490, 653, 2585 |
| AlwI | GGATC | 3 cut(s) | 63, 258, 921 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 757, 1475, 2952 |
| Ama87I | CYCGRG | 1 cut(s) | 215 |
| ApoI | RAATTY | 9 cut(s) | 91, 962, 1961, 2221, 2415, 2423, 2568, 2895, 3047 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 372, 404 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2134, 2397 |
| AspLEI | GCGC | 3 cut(s) | 452, 796, 1496 |
| AspS9I | GGNCC | 6 cut(s) | 54, 177, 189, 595, 1579, 2099 |
| AsuC2I | CCSGG | 1 cut(s) | 1830 |
| AsuHPI | GGTGA | 5 cut(s) | 40, 536, 562, 896, 1073 |
| AvaI | CYCGRG | 1 cut(s) | 215 |
| AvaII | GGWCC | 3 cut(s) | 54, 189, 2099 |
| AxyI | CCTNAGG | 1 cut(s) | 908 |
| BaeGI | GKGCMC | 1 cut(s) | 1390 |
| BalI | TGGCCA | 2 cut(s) | 1530, 2028 |
| BanI | GGYRCC | 3 cut(s) | 449, 1493, 2465 |
| BanII | GRGCYC | 1 cut(s) | 717 |
| BauI | CACGAG | 1 cut(s) | 1544 |
| BbsI | GAAGAC | 3 cut(s) | 450, 1100, 1202 |
| Bbv12I | GWGCWC | 2 cut(s) | 717, 1735 |
| BbvCI | CCTCAGC | 1 cut(s) | 758 |
| BceAI | ACGGC | 3 cut(s) | 463, 1200, 1658 |
| BciT130I | CCWGG | 8 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 2018 |
| BciVI | GTATCC | 1 cut(s) | 2801 |
| BcnI | CCSGG | 1 cut(s) | 1830 |
| BcoDI | GTCTC | 4 cut(s) | 401, 490, 653, 2585 |
| BfaI | CTAG | 6 cut(s) | 699, 1394, 1563, 1922, 3041, 3078 |
| BfmI | CTRYAG | 7 cut(s) | 816, 854, 957, 1503, 1806, 1995, 2765 |
| BfoI | RGCGCY | 3 cut(s) | 453, 797, 1497 |
| BfrI | CTTAAG | 1 cut(s) | 653 |
| BfuAI | ACCTGC | 3 cut(s) | 861, 2464, 2820 |
| BfuI | GTATCC | 1 cut(s) | 2801 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1536 |
| BglII | AGATCT | 1 cut(s) | 558 |
| BlpI | GCTNAGC | 1 cut(s) | 1143 |
| BmcAI | AGTACT | 1 cut(s) | 2382 |
| Bme1390I | CCNGG | 9 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 1830, 2018 |
| Bme18I | GGWCC | 3 cut(s) | 54, 189, 2099 |
| BmeT110I | CYCGRG | 1 cut(s) | 215 |
| BmgBI | CACGTC | 2 cut(s) | 334, 532 |
| BmgT120I | GGNCC | 6 cut(s) | 54, 177, 189, 595, 1579, 2099 |
| BmiI | GGNNCC | 4 cut(s) | 451, 1331, 1495, 2467 |
| BmrFI | CCNGG | 9 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 1830, 2018 |
| BmrI | ACTGGG | 2 cut(s) | 2766, 3040 |
| BmuI | ACTGGG | 2 cut(s) | 2766, 3040 |
| BpiI | GAAGAC | 3 cut(s) | 450, 1100, 1202 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 500, 532 |
| BpmI | CTGGAG | 4 cut(s) | 488, 849, 1011, 1293 |
| Bpu10I | CCTNAGC | 4 cut(s) | 591, 758, 1698, 2634 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1143 |
| BpuEI | CTTGAG | 1 cut(s) | 1500 |
| BpuMI | CCSGG | 1 cut(s) | 1830 |
| BsaAI | YACGTR | 1 cut(s) | 2714 |
| BsaHI | GRCGYC | 3 cut(s) | 450, 483, 1494 |
| BsaI | GGTCTC | 1 cut(s) | 653 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 155, 185, 272, 302, 344, 374, 1266, 1296 |
| Bse1I | ACTGG | 6 cut(s) | 598, 889, 2167, 2378, 2772, 3035 |
| Bse21I | CCTNAGG | 1 cut(s) | 908 |
| Bse3DI | GCAATG | 3 cut(s) | 16, 892, 2610 |
| BseBI | CCWGG | 8 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 2018 |
| BseMI | GCAATG | 3 cut(s) | 16, 892, 2610 |
| BseNI | ACTGG | 6 cut(s) | 598, 889, 2167, 2378, 2772, 3035 |
| BseRI | GAGGAG | 5 cut(s) | 157, 160, 184, 221, 277 |
| BseSI | GKGCMC | 1 cut(s) | 1390 |
| BsgI | GTGCAG | 1 cut(s) | 1464 |
| Bsh1236I | CGCG | 1 cut(s) | 402 |
| BshNI | GGYRCC | 3 cut(s) | 449, 1493, 2465 |
| BsiHKAI | GWGCWC | 2 cut(s) | 717, 1735 |
| BsiHKCI | CYCGRG | 1 cut(s) | 215 |
| BsiSI | CCGG | 2 cut(s) | 480, 1829 |
| BslFI | GGGAC | 1 cut(s) | 392 |
| BsmAI | GTCTC | 4 cut(s) | 401, 490, 653, 2585 |
| BsmBI | CGTCTC | 1 cut(s) | 490 |
| BsmFI | GGGAC | 1 cut(s) | 392 |
| BsmI | GAATGC | 3 cut(s) | 948, 1216, 2982 |
| Bso31I | GGTCTC | 1 cut(s) | 653 |
| BsoBI | CYCGRG | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 3 cut(s) | 717, 1390, 1735 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1143 |
| Bsp19I | CCATGG | 2 cut(s) | 39, 2029 |
| BspFNI | CGCG | 1 cut(s) | 402 |
| BspHI | TCATGA | 2 cut(s) | 1044, 2685 |
| BspLI | GGNNCC | 4 cut(s) | 451, 1331, 1495, 2467 |
| BspMAI | CTGCAG | 4 cut(s) | 820, 858, 961, 1507 |
| BspMI | ACCTGC | 3 cut(s) | 861, 2464, 2820 |
| BspPI | GGATC | 3 cut(s) | 63, 258, 921 |
| BspQI | GCTCTTC | 2 cut(s) | 750, 1740 |
| BspT107I | GGYRCC | 3 cut(s) | 449, 1493, 2465 |
| BspTI | CTTAAG | 1 cut(s) | 653 |
| BspTNI | GGTCTC | 1 cut(s) | 653 |
| BsrBI | CCGCTC | 1 cut(s) | 462 |
| BsrDI | GCAATG | 3 cut(s) | 16, 892, 2610 |
| BsrI | ACTGG | 6 cut(s) | 598, 889, 2167, 2378, 2772, 3035 |
| BssNI | GRCGYC | 3 cut(s) | 450, 483, 1494 |
| BssSI | CACGAG | 1 cut(s) | 1544 |
| BssT1I | CCWWGG | 7 cut(s) | 39, 1531, 1591, 2029, 2514, 2796, 2940 |
| Bst2BI | CACGAG | 1 cut(s) | 1544 |
| Bst2UI | CCWGG | 8 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 2018 |
| Bst4CI | ACNGT | 4 cut(s) | 28, 1401, 2321, 2385 |
| Bst6I | CTCTTC | 2 cut(s) | 750, 1740 |
| BstACI | GRCGYC | 3 cut(s) | 450, 483, 1494 |
| BstAFI | CTTAAG | 1 cut(s) | 653 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 824, 862, 1607, 1691 |
| BstBAI | YACGTR | 1 cut(s) | 2714 |
| BstC8I | GCNNGC | 5 cut(s) | 469, 972, 1318, 1541, 2026 |
| BstDSI | CCRYGG | 2 cut(s) | 39, 2029 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 551 |
| BstFNI | CGCG | 1 cut(s) | 402 |
| BstH2I | RGCGCY | 3 cut(s) | 453, 797, 1497 |
| BstHHI | GCGC | 3 cut(s) | 452, 796, 1496 |
| BstMAI | GTCTC | 4 cut(s) | 401, 490, 653, 2585 |
| BstNI | CCWGG | 8 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 2018 |
| BstNSI | RCATGY | 2 cut(s) | 1689, 2445 |
| BstSCI | CCNGG | 9 cut(s) | 173, 182, 372, 504, 546, 725, 1270, 1828, 2016 |
| BstSFI | CTRYAG | 7 cut(s) | 816, 854, 957, 1503, 1806, 1995, 2765 |
| BstSLI | GKGCMC | 1 cut(s) | 1390 |
| BstUI | CGCG | 1 cut(s) | 402 |
| BstV2I | GAAGAC | 3 cut(s) | 450, 1100, 1202 |
| BstX2I | RGATCY | 1 cut(s) | 558 |
| BstYI | RGATCY | 1 cut(s) | 558 |
| Bsu36I | CCTNAGG | 1 cut(s) | 908 |
| BsuI | GTATCC | 1 cut(s) | 2801 |
| BtgI | CCRYGG | 2 cut(s) | 39, 2029 |
| BtrI | CACGTC | 2 cut(s) | 334, 532 |
| BveI | ACCTGC | 3 cut(s) | 861, 2464, 2820 |
| Cac8I | GCNNGC | 5 cut(s) | 469, 972, 1318, 1541, 2026 |
| CaiI | CAGNNNCTG | 3 cut(s) | 757, 1475, 2952 |
| CciI | TCATGA | 2 cut(s) | 1044, 2685 |
| CfoI | GCGC | 3 cut(s) | 452, 796, 1496 |
| Cfr13I | GGNCC | 6 cut(s) | 54, 177, 189, 595, 1579, 2099 |
| CseI | GACGC | 3 cut(s) | 472, 915, 1296 |
| CsiI | ACCWGGT | 1 cut(s) | 546 |
| Csp6I | GTAC | 7 cut(s) | 1397, 2037, 2290, 2381, 2585, 3021, 3056 |
| CviQI | GTAC | 7 cut(s) | 1397, 2037, 2290, 2381, 2585, 3021, 3056 |
| DinI | GGCGCC | 2 cut(s) | 451, 1495 |
| DraI | TTTAAA | 1 cut(s) | 2421 |
| DraIII | CACNNNGTG | 1 cut(s) | 550 |
| EaeI | YGGCCR | 3 cut(s) | 370, 1528, 2026 |
| Eam1104I | CTCTTC | 2 cut(s) | 750, 1740 |
| EarI | CTCTTC | 2 cut(s) | 750, 1740 |
| EciI | GGCGGA | 2 cut(s) | 187, 454 |
| Ecl136II | GAGCTC | 1 cut(s) | 715 |
| Eco130I | CCWWGG | 7 cut(s) | 39, 1531, 1591, 2029, 2514, 2796, 2940 |
| Eco24I | GRGCYC | 1 cut(s) | 717 |
| Eco31I | GGTCTC | 1 cut(s) | 653 |
| Eco47I | GGWCC | 3 cut(s) | 54, 189, 2099 |
| Eco53kI | GAGCTC | 1 cut(s) | 715 |
| Eco57I | CTGAAG | 2 cut(s) | 1428, 2507 |
| Eco81I | CCTNAGG | 1 cut(s) | 908 |
| Eco88I | CYCGRG | 1 cut(s) | 215 |
| EcoICRI | GAGCTC | 1 cut(s) | 715 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 551 |
| EcoO109I | RGGNCCY | 2 cut(s) | 54, 1579 |
| EcoRI | GAATTC | 2 cut(s) | 91, 3047 |
| EcoRII | CCWGG | 8 cut(s) | 173, 182, 372, 504, 546, 725, 1270, 2016 |
| EcoT14I | CCWWGG | 7 cut(s) | 39, 1531, 1591, 2029, 2514, 2796, 2940 |
| EcoT22I | ATGCAT | 1 cut(s) | 2984 |
| EcoT38I | GRGCYC | 1 cut(s) | 717 |
| EgeI | GGCGCC | 2 cut(s) | 451, 1495 |
| EheI | GGCGCC | 2 cut(s) | 451, 1495 |
| ErhI | CCWWGG | 7 cut(s) | 39, 1531, 1591, 2029, 2514, 2796, 2940 |
| Esp3I | CGTCTC | 1 cut(s) | 490 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1092, 1124 |
| FaqI | GGGAC | 1 cut(s) | 392 |
| FauI | CCCGC | 2 cut(s) | 219, 418 |
| FauNDI | CATATG | 1 cut(s) | 2542 |
| FblI | GTMKAC | 3 cut(s) | 690, 889, 2177 |
| FriOI | GRGCYC | 1 cut(s) | 717 |
| FspBI | CTAG | 6 cut(s) | 699, 1394, 1563, 1922, 3041, 3078 |
| GlaI | GCGC | 3 cut(s) | 451, 795, 1495 |
| GsuI | CTGGAG | 4 cut(s) | 488, 849, 1011, 1293 |
| HaeII | RGCGCY | 3 cut(s) | 453, 797, 1497 |
| HapII | CCGG | 2 cut(s) | 480, 1829 |
| HgaI | GACGC | 3 cut(s) | 472, 915, 1296 |
| HhaI | GCGC | 3 cut(s) | 452, 796, 1496 |
| Hin1I | GRCGYC | 3 cut(s) | 450, 483, 1494 |
| Hin6I | GCGC | 3 cut(s) | 450, 794, 1494 |
| HinP1I | GCGC | 3 cut(s) | 450, 794, 1494 |
| HincII | GTYRAC | 2 cut(s) | 691, 3038 |
| HindII | GTYRAC | 2 cut(s) | 691, 3038 |
| HindIII | AAGCTT | 2 cut(s) | 1345, 2904 |
| HpaII | CCGG | 2 cut(s) | 480, 1829 |
| HphI | GGTGA | 5 cut(s) | 40, 536, 562, 896, 1073 |
| Hpy166II | GTNNAC | 5 cut(s) | 691, 890, 2178, 2317, 3038 |
| Hpy8I | GTNNAC | 5 cut(s) | 691, 890, 2178, 2317, 3038 |
| Hpy99I | CGWCG | 3 cut(s) | 37, 209, 392 |
| HpyCH4III | ACNGT | 4 cut(s) | 28, 1401, 2321, 2385 |
| HpyCH4IV | ACGT | 4 cut(s) | 333, 531, 2713, 2818 |
| HpySE526I | ACGT | 4 cut(s) | 333, 531, 2713, 2818 |
| Hsp92I | GRCGYC | 3 cut(s) | 450, 483, 1494 |
| HspAI | GCGC | 3 cut(s) | 450, 794, 1494 |
| KasI | GGCGCC | 2 cut(s) | 449, 1493 |
| LguI | GCTCTTC | 2 cut(s) | 750, 1740 |
| LmnI | GCTCC | 9 cut(s) | 467, 538, 570, 649, 712, 830, 1152, 1329, 2192 |
| MabI | ACCWGGT | 1 cut(s) | 546 |
| MaeI | CTAG | 6 cut(s) | 699, 1394, 1563, 1922, 3041, 3078 |
| MaeII | ACGT | 4 cut(s) | 333, 531, 2713, 2818 |
| MaeIII | GTNAC | 8 cut(s) | 28, 721, 841, 1172, 1308, 1451, 1653, 2215 |
| MbiI | CCGCTC | 1 cut(s) | 462 |
| MfeI | CAATTG | 2 cut(s) | 930, 1488 |
| MflI | RGATCY | 1 cut(s) | 558 |
| MhlI | GDGCHC | 3 cut(s) | 717, 1390, 1735 |
| MlsI | TGGCCA | 2 cut(s) | 1530, 2028 |
| MluNI | TGGCCA | 2 cut(s) | 1530, 2028 |
| Mly113I | GGCGCC | 2 cut(s) | 450, 1494 |
| MlyI | GAGTC | 5 cut(s) | 38, 158, 245, 353, 686 |
| MmeI | TCCRAC | 7 cut(s) | 96, 108, 186, 273, 291, 1053, 2785 |
| Mox20I | TGGCCA | 2 cut(s) | 1530, 2028 |
| Mph1103I | ATGCAT | 1 cut(s) | 2984 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2134, 2397 |
| MscI | TGGCCA | 2 cut(s) | 1530, 2028 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1043, 2655, 2712 |
| Msp20I | TGGCCA | 2 cut(s) | 1530, 2028 |
| MspA1I | CMGCKG | 1 cut(s) | 1463 |
| MspCI | CTTAAG | 1 cut(s) | 653 |
| MspI | CCGG | 2 cut(s) | 480, 1829 |
| MspR9I | CCNGG | 9 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 1830, 2018 |
| MunI | CAATTG | 2 cut(s) | 930, 1488 |
| Mva1269I | GAATGC | 3 cut(s) | 948, 1216, 2982 |
| MvaI | CCWGG | 8 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 2018 |
| MvnI | CGCG | 1 cut(s) | 402 |
| NarI | GGCGCC | 2 cut(s) | 450, 1494 |
| NciI | CCSGG | 1 cut(s) | 1830 |
| NcoI | CCATGG | 2 cut(s) | 39, 2029 |
| NdeI | CATATG | 1 cut(s) | 2542 |
| NlaIV | GGNNCC | 4 cut(s) | 451, 1331, 1495, 2467 |
| NmeAIII | GCCGAG | 2 cut(s) | 1522, 2035 |
| NmuCI | GTSAC | 5 cut(s) | 28, 841, 1172, 1308, 1451 |
| NsiI | ATGCAT | 1 cut(s) | 2984 |
| NspI | RCATGY | 2 cut(s) | 1689, 2445 |
| PagI | TCATGA | 2 cut(s) | 1044, 2685 |
| PciI | ACATGT | 1 cut(s) | 2441 |
| PciSI | GCTCTTC | 2 cut(s) | 750, 1740 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 32, 213 |
| PctI | GAATGC | 3 cut(s) | 948, 1216, 2982 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2134, 2397 |
| PfeI | GAWTC | 9 cut(s) | 643, 706, 766, 935, 1256, 1466, 1892, 2135, 3014 |
| PfoI | TCCNGGA | 1 cut(s) | 504 |
| PleI | GAGTC | 5 cut(s) | 38, 158, 245, 353, 686 |
| PluTI | GGCGCC | 2 cut(s) | 453, 1497 |
| PpsI | GAGTC | 5 cut(s) | 38, 158, 245, 353, 686 |
| Ppu21I | YACGTR | 1 cut(s) | 2714 |
| PpuMI | RGGWCCY | 1 cut(s) | 54 |
| PscI | ACATGT | 1 cut(s) | 2441 |
| PsiI | TTATAA | 3 cut(s) | 1799, 2643, 2879 |
| Psp124BI | GAGCTC | 1 cut(s) | 717 |
| Psp5II | RGGWCCY | 1 cut(s) | 54 |
| Psp6I | CCWGG | 8 cut(s) | 173, 182, 372, 504, 546, 725, 1270, 2016 |
| PspGI | CCWGG | 8 cut(s) | 173, 182, 372, 504, 546, 725, 1270, 2016 |
| PspN4I | GGNNCC | 4 cut(s) | 451, 1331, 1495, 2467 |
| PspPI | GGNCC | 6 cut(s) | 54, 177, 189, 595, 1579, 2099 |
| PspPPI | RGGWCCY | 1 cut(s) | 54 |
| PstI | CTGCAG | 4 cut(s) | 820, 858, 961, 1507 |
| PstNI | CAGNNNCTG | 3 cut(s) | 757, 1475, 2952 |
| PsuI | RGATCY | 1 cut(s) | 558 |
| PvuII | CAGCTG | 1 cut(s) | 1463 |
| RsaI | GTAC | 7 cut(s) | 1398, 2038, 2291, 2382, 2586, 3022, 3057 |
| RsaNI | GTAC | 7 cut(s) | 1397, 2037, 2290, 2381, 2585, 3021, 3056 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1043, 2655, 2712 |
| SacI | GAGCTC | 1 cut(s) | 717 |
| SalI | GTCGAC | 1 cut(s) | 689 |
| SapI | GCTCTTC | 2 cut(s) | 750, 1740 |
| Sau96I | GGNCC | 6 cut(s) | 54, 177, 189, 595, 1579, 2099 |
| ScaI | AGTACT | 1 cut(s) | 2382 |
| SchI | GAGTC | 5 cut(s) | 38, 158, 245, 353, 686 |
| ScrFI | CCNGG | 9 cut(s) | 175, 184, 374, 506, 548, 727, 1272, 1830, 2018 |
| SduI | GDGCHC | 3 cut(s) | 717, 1390, 1735 |
| SexAI | ACCWGGT | 1 cut(s) | 546 |
| SfcI | CTRYAG | 7 cut(s) | 816, 854, 957, 1503, 1806, 1995, 2765 |
| SfoI | GGCGCC | 2 cut(s) | 451, 1495 |
| SinI | GGWCC | 3 cut(s) | 54, 189, 2099 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1043, 2655, 2712 |
| SmlI | CTYRAG | 2 cut(s) | 653, 1515 |
| SmoI | CTYRAG | 2 cut(s) | 653, 1515 |
| SspDI | GGCGCC | 2 cut(s) | 449, 1493 |
| SspMI | CTAG | 6 cut(s) | 699, 1394, 1563, 1922, 3041, 3078 |
| SstI | GAGCTC | 1 cut(s) | 717 |
| StyD4I | CCNGG | 9 cut(s) | 173, 182, 372, 504, 546, 725, 1270, 1828, 2016 |
| StyI | CCWWGG | 7 cut(s) | 39, 1531, 1591, 2029, 2514, 2796, 2940 |
| TaaI | ACNGT | 4 cut(s) | 28, 1401, 2321, 2385 |
| TaiI | ACGT | 4 cut(s) | 336, 534, 2716, 2821 |
| TatI | WGTACW | 1 cut(s) | 2380 |
| TauI | GCSGC | 2 cut(s) | 182, 372 |
| TfiI | GAWTC | 9 cut(s) | 643, 706, 766, 935, 1256, 1466, 1892, 2135, 3014 |
| TseFI | GTSAC | 5 cut(s) | 28, 841, 1172, 1308, 1451 |
| Tsp45I | GTSAC | 5 cut(s) | 28, 841, 1172, 1308, 1451 |
| TspGWI | ACGGA | 4 cut(s) | 37, 193, 2054, 2168 |
| Vha464I | CTTAAG | 1 cut(s) | 653 |
| VpaK11BI | GGWCC | 3 cut(s) | 54, 189, 2099 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 551 |
| XapI | RAATTY | 9 cut(s) | 91, 962, 1961, 2221, 2415, 2423, 2568, 2895, 3047 |
| XbaI | TCTAGA | 1 cut(s) | 1921 |
| XceI | RCATGY | 2 cut(s) | 1689, 2445 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 670 |
| XmiI | GTMKAC | 3 cut(s) | 690, 889, 2177 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2134, 2397 |
| XspI | CTAG | 6 cut(s) | 699, 1394, 1563, 1922, 3041, 3078 |
| ZrmI | AGTACT | 1 cut(s) | 2382 |
| Zsp2I | ATGCAT | 1 cut(s) | 2984 |