Rh4BG179800

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
31766049 .. 31766570
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG179800.1

Sequence Viewer

Length: 522 bp
ATGGGTGATGAACTTTTTTATGAGATATCGCTTCCCTGGGAAGATAAAGAGAGATATAAAGGGAGCCTTGCAGTGTGGAAAGGCTCTATTGCTCTTGTTTCCTATGAAAATGAAATTTGGACGGGTTGCCATGTGTTTCCTAAATCCTTCGACATCTGGGTTATGATGAATGATTCCTGTGGTGTCAAGAGTTCGTGGACAAAATACTTGACCATAGGACCCATGGACGGCATTGACATTCCAGTGGTTTATCCATTGGTATTTTGGGAAAATGACGAGCTTGTTATGGTTGCTGTGGATGGACGCGTAGTCTCGTATAACCTTGGTACACAGACAGTCAAGTATCTTCCTATTCATTTTGTTGGAGATTTTTCAAACGCTCAAGCGGTTGTTTATATGAATAGTATTGTTTCCGTTAAGGGAGGTGACAAACTTGAAGGCATAGACAATACTGCTTTTTATGGCATCATGACACTTCCAAATGGCAGGTTGACGAGTGTTGGACCACCGAAATACTCCTAA

Protein Analysis

173

Amino Acids

19.37

Weight (kDa)

4.72

Isoelectric Point (pI)

18.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
AccII CGCG 1 cut(s) 306
AciI CCGC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 114
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 375, 437
AhdI GACNNNNNGTC 1 cut(s) 308
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 218, 503
AsuHPI GGTGA 2 cut(s) 17, 437
AvaII GGWCC 2 cut(s) 218, 503
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 477
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 2 cut(s) 218, 503
BmeRI GACNNNNNGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 218, 503
BmiI GGNNCC 2 cut(s) 65, 220
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 35, 36, 222, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 4 cut(s) 35, 36, 222, 322
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 386
BspFNI CGCG 1 cut(s) 306
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 65, 220
BspMI ACCTGC 1 cut(s) 477
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 4 cut(s) 35, 36, 222, 322
BssT1I CCWWGG 2 cut(s) 222, 322
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 337
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BstUI CGCG 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 249
BveI ACCTGC 1 cut(s) 477
CciI TCATGA 1 cut(s) 468
Cfr13I GGNCC 2 cut(s) 218, 503
CseI GACGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 327
CviAII CATG 3 cut(s) 131, 223, 469
CviJI RGCY 3 cut(s) 66, 84, 280
CviKI_1 RGCY 3 cut(s) 66, 84, 280
CviQI GTAC 1 cut(s) 327
DriI GACNNNNNGTC 1 cut(s) 308
Eam1105I GACNNNNNGTC 1 cut(s) 308
Eco130I CCWWGG 2 cut(s) 222, 322
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 218, 503
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 35
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 222, 322
ErhI CCWWGG 2 cut(s) 222, 322
FaeI CATG 3 cut(s) 134, 226, 472
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 3 cut(s) 130, 222, 468
FokI GGATG 1 cut(s) 311
HgaI GACGC 1 cut(s) 312
Hin1II CATG 3 cut(s) 134, 226, 472
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 1 cut(s) 173
HphI GGTGA 2 cut(s) 17, 437
Hpy166II GTNNAC 3 cut(s) 198, 329, 492
Hpy188III TCNNGA 2 cut(s) 187, 469
Hpy8I GTNNAC 3 cut(s) 198, 329, 492
HpyAV CCTTC 2 cut(s) 157, 431
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 1 cut(s) 71
Hsp92II CATG 3 cut(s) 134, 226, 472
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 6 cut(s) 22, 49, 142, 190, 255, 472
LweI GCATC 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 425
MboII GAAGA 2 cut(s) 53, 338
MluCI AATT 1 cut(s) 114
MluI ACGCGT 1 cut(s) 304
MmeI TCCRAC 2 cut(s) 343, 481
MnlI CCTC 1 cut(s) 416
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 306
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 3 cut(s) 134, 226, 472
NlaIV GGNNCC 2 cut(s) 65, 220
NmuCI GTSAC 1 cut(s) 425
PagI TCATGA 1 cut(s) 468
PasI CCCWGGG 1 cut(s) 36
PfeI GAWTC 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 65, 220
PspPI GGNCC 2 cut(s) 218, 503
PspPPI RGGWCCY 1 cut(s) 218
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 1 cut(s) 417
Sau96I GGNCC 2 cut(s) 218, 503
ScrFI CCNGG 1 cut(s) 37
SetI ASST 4 cut(s) 282, 324, 427, 491
SfaNI GCATC 1 cut(s) 474
SinI GGWCC 2 cut(s) 218, 503
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 2 cut(s) 222, 322
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 114
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 78, 249
TseFI GTSAC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 6 cut(s) 24, 120, 126, 182, 344, 413
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 2 cut(s) 78, 249
VpaK11BI GGWCC 2 cut(s) 218, 503
XapI RAATTY 1 cut(s) 114
XcmI CCANNNNNNNNNTGG 2 cut(s) 220, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.