Cyclic phosphodiesterase-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 699, 928, 1374 |
| AccII | CGCG | 3 cut(s) | 143, 181, 1662 |
| AciI | CCGC | 3 cut(s) | 141, 196, 664 |
| AclI | AACGTT | 1 cut(s) | 1684 |
| AclWI | GGATC | 4 cut(s) | 593, 1521, 1534, 1665 |
| AcoI | YGGCCR | 1 cut(s) | 415 |
| AcsI | RAATTY | 1 cut(s) | 485 |
| AcuI | CTGAAG | 1 cut(s) | 279 |
| AfaI | GTAC | 3 cut(s) | 617, 1219, 1406 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 479, 1027, 1522, 1523, 1686 |
| AflII | CTTAAG | 2 cut(s) | 1229, 1319 |
| AflIII | ACRYGT | 1 cut(s) | 1195 |
| AgsI | TTSAA | 8 cut(s) | 70, 377, 490, 647, 796, 982, 1247, 1673 |
| AjiI | CACGTC | 1 cut(s) | 169 |
| AjnI | CCWGG | 3 cut(s) | 345, 1476, 1521 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 793, 825 |
| AleI | CACNNNNGTG | 1 cut(s) | 1638 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1497, 1529 |
| AluBI | AGCT | 8 cut(s) | 327, 946, 985, 1228, 1318, 1692, 1775, 1815 |
| AluI | AGCT | 8 cut(s) | 327, 946, 985, 1228, 1318, 1692, 1775, 1815 |
| Alw21I | GWGCWC | 1 cut(s) | 948 |
| Alw26I | GTCTC | 4 cut(s) | 82, 248, 285, 1739 |
| AlwI | GGATC | 4 cut(s) | 593, 1521, 1534, 1665 |
| AoxI | GGCC | 7 cut(s) | 415, 454, 524, 770, 1422, 1471, 1493 |
| ApeKI | GCWGC | 4 cut(s) | 193, 199, 327, 1308 |
| ApoI | RAATTY | 1 cut(s) | 485 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 840 |
| AspLEI | GCGC | 1 cut(s) | 181 |
| AspS9I | GGNCC | 7 cut(s) | 525, 1030, 1145, 1422, 1471, 1493, 1884 |
| AsuC2I | CCSGG | 2 cut(s) | 111, 474 |
| AsuHPI | GGTGA | 7 cut(s) | 37, 119, 148, 962, 1078, 1474, 1625 |
| AvaII | GGWCC | 3 cut(s) | 1030, 1145, 1884 |
| AxyI | CCTNAGG | 1 cut(s) | 774 |
| BaeGI | GKGCMC | 1 cut(s) | 1121 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1124, 1157 |
| BamHI | GGATCC | 1 cut(s) | 1526 |
| BanII | GRGCYC | 1 cut(s) | 948 |
| Bbv12I | GWGCWC | 1 cut(s) | 948 |
| BbvI | GCAGC | 4 cut(s) | 205, 211, 314, 1320 |
| BceAI | ACGGC | 1 cut(s) | 430 |
| BciT130I | CCWGG | 3 cut(s) | 347, 1478, 1523 |
| BciVI | GTATCC | 1 cut(s) | 419 |
| BclI | TGATCA | 2 cut(s) | 888, 1126 |
| BcnI | CCSGG | 2 cut(s) | 111, 474 |
| BcoDI | GTCTC | 4 cut(s) | 82, 248, 285, 1739 |
| BfaI | CTAG | 3 cut(s) | 444, 458, 1812 |
| BfrI | CTTAAG | 2 cut(s) | 1229, 1319 |
| BfuI | GTATCC | 1 cut(s) | 419 |
| BglII | AGATCT | 1 cut(s) | 1868 |
| BisI | GCNGC | 5 cut(s) | 194, 197, 200, 328, 1309 |
| BlsI | GCNGC | 5 cut(s) | 195, 198, 201, 329, 1310 |
| Bme1390I | CCNGG | 5 cut(s) | 111, 347, 474, 1478, 1523 |
| Bme18I | GGWCC | 3 cut(s) | 1030, 1145, 1884 |
| BmgBI | CACGTC | 1 cut(s) | 169 |
| BmgT120I | GGNCC | 7 cut(s) | 525, 1030, 1145, 1422, 1471, 1493, 1884 |
| BmiI | GGNNCC | 1 cut(s) | 1528 |
| BmrFI | CCNGG | 5 cut(s) | 111, 347, 474, 1478, 1523 |
| BmsI | GCATC | 4 cut(s) | 51, 871, 1348, 1543 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1035 |
| BpmI | CTGGAG | 2 cut(s) | 1460, 1797 |
| BpuEI | CTTGAG | 1 cut(s) | 299 |
| BpuMI | CCSGG | 2 cut(s) | 111, 474 |
| Bsa29I | ATCGAT | 1 cut(s) | 865 |
| BsaAI | YACGTR | 2 cut(s) | 1136, 1198 |
| BsaJI | CCNNGG | 3 cut(s) | 412, 705, 1522 |
| BsaWI | WCCGGW | 1 cut(s) | 960 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 31, 61, 1770, 1800 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 479, 1027, 1522, 1523, 1686 |
| Bse118I | RCCGGY | 1 cut(s) | 1432 |
| Bse1I | ACTGG | 3 cut(s) | 577, 589, 1636 |
| Bse21I | CCTNAGG | 1 cut(s) | 774 |
| Bse3DI | GCAATG | 1 cut(s) | 430 |
| BseBI | CCWGG | 3 cut(s) | 347, 1478, 1523 |
| BseCI | ATCGAT | 1 cut(s) | 865 |
| BseDI | CCNNGG | 3 cut(s) | 412, 705, 1522 |
| BseGI | GGATG | 7 cut(s) | 547, 1078, 1512, 1518, 1530, 1558, 1591 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 479, 1027, 1522, 1523, 1686 |
| BseMI | GCAATG | 1 cut(s) | 430 |
| BseMII | CTCAG | 2 cut(s) | 933, 1356 |
| BseNI | ACTGG | 3 cut(s) | 577, 589, 1636 |
| BseRI | GAGGAG | 5 cut(s) | 221, 224, 227, 230, 1727 |
| BseSI | GKGCMC | 1 cut(s) | 1121 |
| BseXI | GCAGC | 4 cut(s) | 205, 211, 314, 1320 |
| BseYI | CCCAGC | 1 cut(s) | 814 |
| BsgI | GTGCAG | 1 cut(s) | 212 |
| Bsh1236I | CGCG | 3 cut(s) | 143, 181, 1662 |
| Bsh1285I | CGRYCG | 2 cut(s) | 965, 1906 |
| BshFI | GGCC | 7 cut(s) | 417, 456, 526, 772, 1424, 1473, 1495 |
| BshVI | ATCGAT | 1 cut(s) | 865 |
| BsiEI | CGRYCG | 2 cut(s) | 965, 1906 |
| BsiHKAI | GWGCWC | 1 cut(s) | 948 |
| BsiSI | CCGG | 9 cut(s) | 110, 392, 474, 539, 667, 961, 1396, 1433, 1496 |
| BslFI | GGGAC | 2 cut(s) | 24, 1317 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 479, 1027, 1522, 1523, 1686 |
| BsmAI | GTCTC | 4 cut(s) | 82, 248, 285, 1739 |
| BsmBI | CGTCTC | 1 cut(s) | 285 |
| BsmFI | GGGAC | 2 cut(s) | 24, 1317 |
| BsnI | GGCC | 7 cut(s) | 417, 456, 526, 772, 1424, 1473, 1495 |
| Bsp1286I | GDGCHC | 2 cut(s) | 948, 1121 |
| Bsp143I | GATC | 9 cut(s) | 598, 729, 888, 1126, 1500, 1526, 1606, 1657, 1868 |
| Bsp19I | CCATGG | 1 cut(s) | 705 |
| Bsp68I | TCGCGA | 1 cut(s) | 1662 |
| BspACI | CCGC | 3 cut(s) | 141, 196, 664 |
| BspANI | GGCC | 7 cut(s) | 417, 456, 526, 772, 1424, 1473, 1495 |
| BspCNI | CTCAG | 2 cut(s) | 934, 1355 |
| BspDI | ATCGAT | 1 cut(s) | 865 |
| BspFNI | CGCG | 3 cut(s) | 143, 181, 1662 |
| BspLI | GGNNCC | 1 cut(s) | 1528 |
| BspPI | GGATC | 4 cut(s) | 593, 1521, 1534, 1665 |
| BspTI | CTTAAG | 2 cut(s) | 1229, 1319 |
| BsrDI | GCAATG | 1 cut(s) | 430 |
| BsrFI | RCCGGY | 1 cut(s) | 1432 |
| BsrI | ACTGG | 3 cut(s) | 577, 589, 1636 |
| BssAI | RCCGGY | 1 cut(s) | 1432 |
| BssECI | CCNNGG | 3 cut(s) | 412, 705, 1522 |
| BssMI | GATC | 9 cut(s) | 598, 729, 888, 1126, 1500, 1526, 1606, 1657, 1868 |
| BssNAI | GTATAC | 2 cut(s) | 700, 929 |
| BssT1I | CCWWGG | 1 cut(s) | 705 |
| Bst1107I | GTATAC | 2 cut(s) | 700, 929 |
| Bst2UI | CCWGG | 3 cut(s) | 347, 1478, 1523 |
| Bst4CI | ACNGT | 5 cut(s) | 926, 954, 991, 1187, 1715 |
| Bst6I | CTCTTC | 2 cut(s) | 720, 1376 |
| BstAFI | CTTAAG | 2 cut(s) | 1229, 1319 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 327 |
| BstBAI | YACGTR | 2 cut(s) | 1136, 1198 |
| BstDEI | CTNAG | 7 cut(s) | 243, 677, 774, 942, 1022, 1342, 1620 |
| BstDSI | CCRYGG | 2 cut(s) | 412, 705 |
| BstF5I | GGATG | 7 cut(s) | 547, 1078, 1512, 1518, 1530, 1558, 1591 |
| BstFNI | CGCG | 3 cut(s) | 143, 181, 1662 |
| BstHHI | GCGC | 1 cut(s) | 181 |
| BstKTI | GATC | 9 cut(s) | 601, 732, 891, 1129, 1503, 1529, 1609, 1660, 1871 |
| BstMAI | GTCTC | 4 cut(s) | 82, 248, 285, 1739 |
| BstMBI | GATC | 9 cut(s) | 598, 729, 888, 1126, 1500, 1526, 1606, 1657, 1868 |
| BstMCI | CGRYCG | 2 cut(s) | 965, 1906 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 199, 327, 1016, 1812 |
| BstNI | CCWGG | 3 cut(s) | 347, 1478, 1523 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1035 |
| BstSCI | CCNGG | 5 cut(s) | 109, 345, 472, 1476, 1521 |
| BstSLI | GKGCMC | 1 cut(s) | 1121 |
| BstSNI | TACGTA | 1 cut(s) | 1136 |
| BstUI | CGCG | 3 cut(s) | 143, 181, 1662 |
| BstV1I | GCAGC | 4 cut(s) | 205, 211, 314, 1320 |
| BstX2I | RGATCY | 2 cut(s) | 1526, 1868 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 425, 878 |
| BstYI | RGATCY | 2 cut(s) | 1526, 1868 |
| BstZ17I | GTATAC | 2 cut(s) | 700, 929 |
| Bsu15I | ATCGAT | 1 cut(s) | 865 |
| Bsu36I | CCTNAGG | 1 cut(s) | 774 |
| BsuI | GTATCC | 1 cut(s) | 419 |
| BsuRI | GGCC | 7 cut(s) | 417, 456, 526, 772, 1424, 1473, 1495 |
| BsuTUI | ATCGAT | 1 cut(s) | 865 |
| BtgI | CCRYGG | 2 cut(s) | 412, 705 |
| BtgZI | GCGATG | 2 cut(s) | 1179, 1376 |
| BtrI | CACGTC | 1 cut(s) | 169 |
| BtsCI | GGATG | 7 cut(s) | 547, 1078, 1512, 1518, 1530, 1558, 1591 |
| BtsI | GCAGTG | 1 cut(s) | 418 |
| BtsIMutI | CAGTG | 3 cut(s) | 418, 1192, 1643 |
| BtuMI | TCGCGA | 1 cut(s) | 1662 |
| CfoI | GCGC | 1 cut(s) | 181 |
| Cfr10I | RCCGGY | 1 cut(s) | 1432 |
| Cfr13I | GGNCC | 7 cut(s) | 525, 1030, 1145, 1422, 1471, 1493, 1884 |
| ClaI | ATCGAT | 1 cut(s) | 865 |
| CseI | GACGC | 2 cut(s) | 860, 1314 |
| Csp6I | GTAC | 3 cut(s) | 616, 1218, 1405 |
| CviAII | CATG | 6 cut(s) | 203, 510, 604, 706, 872, 1300 |
| CviQI | GTAC | 3 cut(s) | 616, 1218, 1405 |
| DdeI | CTNAG | 7 cut(s) | 243, 677, 774, 942, 1022, 1342, 1620 |
| DpnI | GATC | 9 cut(s) | 600, 731, 890, 1128, 1502, 1528, 1608, 1659, 1870 |
| DpnII | GATC | 9 cut(s) | 598, 729, 888, 1126, 1500, 1526, 1606, 1657, 1868 |
| EaeI | YGGCCR | 1 cut(s) | 415 |
| Eam1104I | CTCTTC | 2 cut(s) | 720, 1376 |
| EarI | CTCTTC | 2 cut(s) | 720, 1376 |
| Ecl136II | GAGCTC | 1 cut(s) | 946 |
| Eco105I | TACGTA | 1 cut(s) | 1136 |
| Eco130I | CCWWGG | 1 cut(s) | 705 |
| Eco24I | GRGCYC | 1 cut(s) | 948 |
| Eco32I | GATATC | 1 cut(s) | 1043 |
| Eco47I | GGWCC | 3 cut(s) | 1030, 1145, 1884 |
| Eco53kI | GAGCTC | 1 cut(s) | 946 |
| Eco57I | CTGAAG | 1 cut(s) | 279 |
| Eco81I | CCTNAGG | 1 cut(s) | 774 |
| EcoICRI | GAGCTC | 1 cut(s) | 946 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1471 |
| EcoRI | GAATTC | 1 cut(s) | 485 |
| EcoRII | CCWGG | 3 cut(s) | 345, 1476, 1521 |
| EcoRV | GATATC | 1 cut(s) | 1043 |
| EcoT14I | CCWWGG | 1 cut(s) | 705 |
| EcoT38I | GRGCYC | 1 cut(s) | 948 |
| ErhI | CCWWGG | 1 cut(s) | 705 |
| Esp3I | CGTCTC | 1 cut(s) | 285 |
| FaeI | CATG | 6 cut(s) | 206, 513, 607, 709, 875, 1303 |
| FaqI | GGGAC | 2 cut(s) | 24, 1317 |
| FatI | CATG | 6 cut(s) | 202, 509, 603, 705, 871, 1299 |
| FbaI | TGATCA | 2 cut(s) | 888, 1126 |
| FblI | GTMKAC | 3 cut(s) | 699, 928, 1374 |
| Fnu4HI | GCNGC | 5 cut(s) | 194, 197, 200, 328, 1309 |
| FokI | GGATG | 7 cut(s) | 554, 1085, 1499, 1505, 1517, 1565, 1598 |
| FriOI | GRGCYC | 1 cut(s) | 948 |
| Fsp4HI | GCNGC | 5 cut(s) | 194, 197, 200, 328, 1309 |
| FspBI | CTAG | 3 cut(s) | 444, 458, 1812 |
| GlaI | GCGC | 1 cut(s) | 180 |
| GluI | GCNGC | 5 cut(s) | 194, 197, 200, 328, 1309 |
| GsaI | CCCAGC | 1 cut(s) | 818 |
| GsuI | CTGGAG | 2 cut(s) | 1460, 1797 |
| HaeIII | GGCC | 7 cut(s) | 417, 456, 526, 772, 1424, 1473, 1495 |
| HapII | CCGG | 9 cut(s) | 110, 392, 474, 539, 667, 961, 1396, 1433, 1496 |
| HgaI | GACGC | 2 cut(s) | 860, 1314 |
| HhaI | GCGC | 1 cut(s) | 181 |
| Hin1II | CATG | 6 cut(s) | 206, 513, 607, 709, 875, 1303 |
| Hin6I | GCGC | 1 cut(s) | 179 |
| HinP1I | GCGC | 1 cut(s) | 179 |
| HincII | GTYRAC | 2 cut(s) | 1183, 1752 |
| HindII | GTYRAC | 2 cut(s) | 1183, 1752 |
| HindIII | AAGCTT | 3 cut(s) | 983, 1226, 1316 |
| HinfI | GANTC | 9 cut(s) | 66, 373, 740, 867, 967, 1001, 1452, 1543, 1732 |
| HpaII | CCGG | 9 cut(s) | 110, 392, 474, 539, 667, 961, 1396, 1433, 1496 |
| HphI | GGTGA | 7 cut(s) | 37, 119, 148, 962, 1078, 1474, 1625 |
| Hpy166II | GTNNAC | 6 cut(s) | 700, 929, 1030, 1183, 1375, 1752 |
| Hpy188I | TCNGA | 6 cut(s) | 60, 386, 943, 1131, 1345, 1875 |
| Hpy8I | GTNNAC | 6 cut(s) | 700, 929, 1030, 1183, 1375, 1752 |
| Hpy99I | CGWCG | 2 cut(s) | 1041, 1802 |
| HpyAV | CCTTC | 6 cut(s) | 241, 524, 802, 907, 1453, 1831 |
| HpyCH4III | ACNGT | 5 cut(s) | 926, 954, 991, 1187, 1715 |
| HpyCH4IV | ACGT | 4 cut(s) | 168, 1135, 1197, 1684 |
| HpyCH4V | TGCA | 6 cut(s) | 193, 288, 423, 468, 532, 1841 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 199, 327, 1016, 1812 |
| HpyF3I | CTNAG | 7 cut(s) | 243, 677, 774, 942, 1022, 1342, 1620 |
| HpySE526I | ACGT | 4 cut(s) | 168, 1135, 1197, 1684 |
| Hsp92II | CATG | 6 cut(s) | 206, 513, 607, 709, 875, 1303 |
| HspAI | GCGC | 1 cut(s) | 179 |
| Ksp22I | TGATCA | 2 cut(s) | 888, 1126 |
| Kzo9I | GATC | 9 cut(s) | 598, 729, 888, 1126, 1500, 1526, 1606, 1657, 1868 |
| LmnI | GCTCC | 3 cut(s) | 951, 1582, 1689 |
| Lsp1109I | GCAGC | 4 cut(s) | 205, 211, 314, 1320 |
| LweI | GCATC | 4 cut(s) | 51, 871, 1348, 1543 |
| MaeI | CTAG | 3 cut(s) | 444, 458, 1812 |
| MaeII | ACGT | 4 cut(s) | 168, 1135, 1197, 1684 |
| MaeIII | GTNAC | 3 cut(s) | 230, 625, 1615 |
| MalI | GATC | 9 cut(s) | 600, 731, 890, 1128, 1502, 1528, 1608, 1659, 1870 |
| MboI | GATC | 9 cut(s) | 598, 729, 888, 1126, 1500, 1526, 1606, 1657, 1868 |
| MboII | GAAGA | 7 cut(s) | 272, 737, 1265, 1367, 1393, 1769, 1772 |
| MflI | RGATCY | 2 cut(s) | 1526, 1868 |
| MhlI | GDGCHC | 2 cut(s) | 948, 1121 |
| MluCI | AATT | 9 cut(s) | 273, 401, 477, 485, 819, 836, 884, 1624, 1782 |
| MlyI | GAGTC | 2 cut(s) | 1552, 1741 |
| MmeI | TCCRAC | 3 cut(s) | 159, 973, 1667 |
| MroXI | GAANNNNTTC | 1 cut(s) | 840 |
| MseI | TTAA | 6 cut(s) | 1083, 1209, 1230, 1320, 1560, 1788 |
| MslI | CAYNNNNRTG | 4 cut(s) | 423, 876, 1535, 1638 |
| MspA1I | CMGCKG | 1 cut(s) | 196 |
| MspCI | CTTAAG | 2 cut(s) | 1229, 1319 |
| MspI | CCGG | 9 cut(s) | 110, 392, 474, 539, 667, 961, 1396, 1433, 1496 |
| MspR9I | CCNGG | 5 cut(s) | 111, 347, 474, 1478, 1523 |
| MvaI | CCWGG | 3 cut(s) | 347, 1478, 1523 |
| MvnI | CGCG | 3 cut(s) | 143, 181, 1662 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 199, 327, 1016, 1812 |
| NciI | CCSGG | 2 cut(s) | 111, 474 |
| NcoI | CCATGG | 1 cut(s) | 705 |
| NdeII | GATC | 9 cut(s) | 598, 729, 888, 1126, 1500, 1526, 1606, 1657, 1868 |
| NlaIII | CATG | 6 cut(s) | 206, 513, 607, 709, 875, 1303 |
| NlaIV | GGNNCC | 1 cut(s) | 1528 |
| NmuCI | GTSAC | 1 cut(s) | 625 |
| NruI | TCGCGA | 1 cut(s) | 1662 |
| OliI | CACNNNNGTG | 1 cut(s) | 1638 |
| PdmI | GAANNNNTTC | 1 cut(s) | 840 |
| PfeI | GAWTC | 7 cut(s) | 66, 373, 740, 867, 967, 1001, 1452 |
| PfoI | TCCNGGA | 2 cut(s) | 345, 472 |
| PkrI | GCNGC | 5 cut(s) | 195, 198, 201, 329, 1310 |
| PleI | GAGTC | 2 cut(s) | 1551, 1740 |
| PpsI | GAGTC | 2 cut(s) | 1551, 1740 |
| Ppu21I | YACGTR | 2 cut(s) | 1136, 1198 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1035 |
| Psp124BI | GAGCTC | 1 cut(s) | 948 |
| Psp1406I | AACGTT | 1 cut(s) | 1684 |
| Psp6I | CCWGG | 3 cut(s) | 345, 1476, 1521 |
| PspFI | CCCAGC | 1 cut(s) | 814 |
| PspGI | CCWGG | 3 cut(s) | 345, 1476, 1521 |
| PspN4I | GGNNCC | 1 cut(s) | 1528 |
| PspPI | GGNCC | 7 cut(s) | 525, 1030, 1145, 1422, 1471, 1493, 1884 |
| PsuI | RGATCY | 2 cut(s) | 1526, 1868 |
| RruI | TCGCGA | 1 cut(s) | 1662 |
| RsaI | GTAC | 3 cut(s) | 617, 1219, 1406 |
| RsaNI | GTAC | 3 cut(s) | 616, 1218, 1405 |
| RseI | CAYNNNNRTG | 4 cut(s) | 423, 876, 1535, 1638 |
| SacI | GAGCTC | 1 cut(s) | 948 |
| SaqAI | TTAA | 6 cut(s) | 1083, 1209, 1230, 1320, 1560, 1788 |
| SatI | GCNGC | 5 cut(s) | 194, 197, 200, 328, 1309 |
| Sau3AI | GATC | 9 cut(s) | 598, 729, 888, 1126, 1500, 1526, 1606, 1657, 1868 |
| Sau96I | GGNCC | 7 cut(s) | 525, 1030, 1145, 1422, 1471, 1493, 1884 |
| SchI | GAGTC | 2 cut(s) | 1552, 1741 |
| ScrFI | CCNGG | 5 cut(s) | 111, 347, 474, 1478, 1523 |
| SduI | GDGCHC | 2 cut(s) | 948, 1121 |
| SfaNI | GCATC | 4 cut(s) | 51, 871, 1348, 1543 |
| SinI | GGWCC | 3 cut(s) | 1030, 1145, 1884 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 423, 876, 1535, 1638 |
| SmlI | CTYRAG | 3 cut(s) | 278, 1229, 1319 |
| SmoI | CTYRAG | 3 cut(s) | 278, 1229, 1319 |
| SnaBI | TACGTA | 1 cut(s) | 1136 |
| Sse9I | AATT | 9 cut(s) | 273, 401, 477, 485, 819, 836, 884, 1624, 1782 |
| SsiI | CCGC | 3 cut(s) | 141, 196, 664 |
| SspI | AATATT | 1 cut(s) | 1792 |
| SspMI | CTAG | 3 cut(s) | 444, 458, 1812 |
| SstI | GAGCTC | 1 cut(s) | 948 |
| StyD4I | CCNGG | 5 cut(s) | 109, 345, 472, 1476, 1521 |
| StyI | CCWWGG | 1 cut(s) | 705 |
| TaaI | ACNGT | 5 cut(s) | 926, 954, 991, 1187, 1715 |
| TaiI | ACGT | 4 cut(s) | 171, 1138, 1200, 1687 |
| TaqI | TCGA | 7 cut(s) | 567, 865, 900, 965, 1039, 1503, 1797 |
| TaqII | GACCGA | 2 cut(s) | 1285, 1892 |
| TasI | AATT | 9 cut(s) | 273, 401, 477, 485, 819, 836, 884, 1624, 1782 |
| TatI | WGTACW | 2 cut(s) | 615, 1404 |
| TauI | GCSGC | 1 cut(s) | 199 |
| TfiI | GAWTC | 7 cut(s) | 66, 373, 740, 867, 967, 1001, 1452 |
| Tru1I | TTAA | 6 cut(s) | 1083, 1209, 1230, 1320, 1560, 1788 |
| Tru9I | TTAA | 6 cut(s) | 1083, 1209, 1230, 1320, 1560, 1788 |
| TscAI | CASTG | 3 cut(s) | 425, 1192, 1643 |
| TseFI | GTSAC | 1 cut(s) | 625 |
| TseI | GCWGC | 4 cut(s) | 193, 199, 327, 1308 |
| Tsp45I | GTSAC | 1 cut(s) | 625 |
| TspDTI | ATGAA | 8 cut(s) | 17, 569, 672, 1014, 1071, 1368, 1635, 1863 |
| TspGWI | ACGGA | 1 cut(s) | 1769 |
| TspRI | CASTG | 3 cut(s) | 425, 1192, 1643 |
| Vha464I | CTTAAG | 2 cut(s) | 1229, 1319 |
| VpaK11BI | GGWCC | 3 cut(s) | 1030, 1145, 1884 |
| XapI | RAATTY | 1 cut(s) | 485 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 569, 1484 |
| XmiI | GTMKAC | 3 cut(s) | 699, 928, 1374 |
| XmnI | GAANNNNTTC | 1 cut(s) | 840 |
| XspI | CTAG | 3 cut(s) | 444, 458, 1812 |