gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 427 |
| AccB1I | GGYRCC | 1 cut(s) | 115 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 533 |
| AccBSI | CCGCTC | 1 cut(s) | 483 |
| AccII | CGCG | 1 cut(s) | 179 |
| AciI | CCGC | 5 cut(s) | 18, 111, 122, 215, 481 |
| AclWI | GGATC | 1 cut(s) | 80 |
| AcvI | CACGTG | 1 cut(s) | 365 |
| AfaI | GTAC | 2 cut(s) | 212, 494 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 149, 329, 487, 533 |
| AflIII | ACRYGT | 2 cut(s) | 60, 362 |
| AjiI | CACGTC | 1 cut(s) | 61 |
| AjnI | CCWGG | 1 cut(s) | 217 |
| AluBI | AGCT | 2 cut(s) | 566, 576 |
| AluI | AGCT | 2 cut(s) | 566, 576 |
| AlwI | GGATC | 1 cut(s) | 80 |
| Ama87I | CYCGRG | 1 cut(s) | 243 |
| AoxI | GGCC | 1 cut(s) | 42 |
| AspLEI | GCGC | 2 cut(s) | 181, 290 |
| AspS9I | GGNCC | 4 cut(s) | 42, 91, 153, 195 |
| AsuC2I | CCSGG | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 1 cut(s) | 94 |
| AvaI | CYCGRG | 1 cut(s) | 243 |
| AvaII | GGWCC | 3 cut(s) | 91, 153, 195 |
| BaeGI | GKGCMC | 1 cut(s) | 118 |
| BanI | GGYRCC | 1 cut(s) | 115 |
| BanII | GRGCYC | 1 cut(s) | 135 |
| BbrPI | CACGTG | 1 cut(s) | 365 |
| BccI | CCATC | 6 cut(s) | 164, 385, 431, 460, 527, 535 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 9, 43 |
| BciT130I | CCWGG | 1 cut(s) | 219 |
| BclI | TGATCA | 1 cut(s) | 346 |
| BcnI | CCSGG | 1 cut(s) | 98 |
| BfaI | CTAG | 1 cut(s) | 354 |
| BfuAI | ACCTGC | 1 cut(s) | 427 |
| BisI | GCNGC | 1 cut(s) | 481 |
| BlsI | GCNGC | 1 cut(s) | 482 |
| BmcAI | AGTACT | 1 cut(s) | 494 |
| Bme1390I | CCNGG | 2 cut(s) | 98, 219 |
| Bme18I | GGWCC | 3 cut(s) | 91, 153, 195 |
| BmeT110I | CYCGRG | 1 cut(s) | 243 |
| BmgBI | CACGTC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 4 cut(s) | 42, 91, 153, 195 |
| BmiI | GGNNCC | 4 cut(s) | 117, 154, 197, 321 |
| BmrFI | CCNGG | 2 cut(s) | 98, 219 |
| BpmI | CTGGAG | 1 cut(s) | 517 |
| BpuMI | CCSGG | 1 cut(s) | 98 |
| BsaAI | YACGTR | 1 cut(s) | 365 |
| BsaJI | CCNNGG | 1 cut(s) | 486 |
| BsaWI | WCCGGW | 1 cut(s) | 52 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 149, 329, 487, 533 |
| Bse118I | RCCGGY | 1 cut(s) | 118 |
| Bse1I | ACTGG | 1 cut(s) | 500 |
| BseBI | CCWGG | 1 cut(s) | 219 |
| BseDI | CCNNGG | 1 cut(s) | 486 |
| BseGI | GGATG | 3 cut(s) | 61, 156, 396 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 149, 329, 487, 533 |
| BseMII | CTCAG | 2 cut(s) | 540, 569 |
| BseNI | ACTGG | 1 cut(s) | 500 |
| BseRI | GAGGAG | 1 cut(s) | 349 |
| BseSI | GKGCMC | 1 cut(s) | 118 |
| Bsh1236I | CGCG | 1 cut(s) | 179 |
| Bsh1285I | CGRYCG | 1 cut(s) | 70 |
| BshFI | GGCC | 1 cut(s) | 44 |
| BshNI | GGYRCC | 1 cut(s) | 115 |
| BsiEI | CGRYCG | 1 cut(s) | 70 |
| BsiHKCI | CYCGRG | 1 cut(s) | 243 |
| BsiSI | CCGG | 3 cut(s) | 53, 97, 119 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 149, 329, 487, 533 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsnI | GGCC | 1 cut(s) | 44 |
| BsoBI | CYCGRG | 1 cut(s) | 243 |
| Bsp1286I | GDGCHC | 2 cut(s) | 118, 135 |
| Bsp143I | GATC | 5 cut(s) | 67, 72, 126, 338, 346 |
| BspACI | CCGC | 5 cut(s) | 18, 111, 122, 215, 481 |
| BspANI | GGCC | 1 cut(s) | 44 |
| BspCNI | CTCAG | 2 cut(s) | 541, 568 |
| BspFNI | CGCG | 1 cut(s) | 179 |
| BspLI | GGNNCC | 4 cut(s) | 117, 154, 197, 321 |
| BspMI | ACCTGC | 1 cut(s) | 427 |
| BspPI | GGATC | 1 cut(s) | 80 |
| BspT107I | GGYRCC | 1 cut(s) | 115 |
| BsrBI | CCGCTC | 1 cut(s) | 483 |
| BsrFI | RCCGGY | 1 cut(s) | 118 |
| BsrI | ACTGG | 1 cut(s) | 500 |
| BssAI | RCCGGY | 1 cut(s) | 118 |
| BssECI | CCNNGG | 1 cut(s) | 486 |
| BssMI | GATC | 5 cut(s) | 67, 72, 126, 338, 346 |
| BssT1I | CCWWGG | 1 cut(s) | 486 |
| Bst2UI | CCWGG | 1 cut(s) | 219 |
| BstBAI | YACGTR | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 2 cut(s) | 265, 574 |
| BstDEI | CTNAG | 3 cut(s) | 429, 549, 555 |
| BstF5I | GGATG | 3 cut(s) | 61, 156, 396 |
| BstFNI | CGCG | 1 cut(s) | 179 |
| BstHHI | GCGC | 2 cut(s) | 181, 290 |
| BstKTI | GATC | 5 cut(s) | 70, 75, 129, 341, 349 |
| BstMBI | GATC | 5 cut(s) | 67, 72, 126, 338, 346 |
| BstMCI | CGRYCG | 1 cut(s) | 70 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 239 |
| BstNI | CCWGG | 1 cut(s) | 219 |
| BstSCI | CCNGG | 2 cut(s) | 96, 217 |
| BstSLI | GKGCMC | 1 cut(s) | 118 |
| BstUI | CGCG | 1 cut(s) | 179 |
| BsuRI | GGCC | 1 cut(s) | 44 |
| BtrI | CACGTC | 1 cut(s) | 61 |
| BtsCI | GGATG | 3 cut(s) | 61, 156, 396 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| BveI | ACCTGC | 1 cut(s) | 427 |
| Cac8I | GCNNGC | 2 cut(s) | 265, 574 |
| CfoI | GCGC | 2 cut(s) | 181, 290 |
| Cfr10I | RCCGGY | 1 cut(s) | 118 |
| Cfr13I | GGNCC | 4 cut(s) | 42, 91, 153, 195 |
| CseI | GACGC | 1 cut(s) | 185 |
| Csp6I | GTAC | 2 cut(s) | 211, 493 |
| CviJI | RGCY | 7 cut(s) | 44, 133, 458, 544, 554, 566, 576 |
| CviKI_1 | RGCY | 7 cut(s) | 44, 133, 458, 544, 554, 566, 576 |
| CviQI | GTAC | 2 cut(s) | 211, 493 |
| DdeI | CTNAG | 3 cut(s) | 429, 549, 555 |
| DpnI | GATC | 5 cut(s) | 69, 74, 128, 340, 348 |
| DpnII | GATC | 5 cut(s) | 67, 72, 126, 338, 346 |
| EciI | GGCGGA | 1 cut(s) | 137 |
| Eco130I | CCWWGG | 1 cut(s) | 486 |
| Eco24I | GRGCYC | 1 cut(s) | 135 |
| Eco47I | GGWCC | 3 cut(s) | 91, 153, 195 |
| Eco72I | CACGTG | 1 cut(s) | 365 |
| Eco88I | CYCGRG | 1 cut(s) | 243 |
| EcoO109I | RGGNCCY | 1 cut(s) | 195 |
| EcoRII | CCWGG | 1 cut(s) | 217 |
| EcoT14I | CCWWGG | 1 cut(s) | 486 |
| EcoT38I | GRGCYC | 1 cut(s) | 135 |
| ErhI | CCWWGG | 1 cut(s) | 486 |
| FaiI | YATR | 3 cut(s) | 164, 461, 569 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FauI | CCCGC | 2 cut(s) | 104, 222 |
| FbaI | TGATCA | 1 cut(s) | 346 |
| Fnu4HI | GCNGC | 1 cut(s) | 481 |
| FokI | GGATG | 3 cut(s) | 68, 143, 403 |
| FriOI | GRGCYC | 1 cut(s) | 135 |
| Fsp4HI | GCNGC | 1 cut(s) | 481 |
| FspBI | CTAG | 1 cut(s) | 354 |
| GlaI | GCGC | 2 cut(s) | 180, 289 |
| GluI | GCNGC | 1 cut(s) | 481 |
| GsuI | CTGGAG | 1 cut(s) | 517 |
| HaeIII | GGCC | 1 cut(s) | 44 |
| HapII | CCGG | 3 cut(s) | 53, 97, 119 |
| HgaI | GACGC | 1 cut(s) | 185 |
| HhaI | GCGC | 2 cut(s) | 181, 290 |
| Hin6I | GCGC | 2 cut(s) | 179, 288 |
| HinP1I | GCGC | 2 cut(s) | 179, 288 |
| HpaII | CCGG | 3 cut(s) | 53, 97, 119 |
| HphI | GGTGA | 1 cut(s) | 94 |
| Hpy188I | TCNGA | 4 cut(s) | 67, 72, 532, 558 |
| Hpy188III | TCNNGA | 1 cut(s) | 76 |
| HpyAV | CCTTC | 2 cut(s) | 244, 381 |
| HpyCH4IV | ACGT | 2 cut(s) | 60, 364 |
| HpyCH4V | TGCA | 2 cut(s) | 14, 415 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 239 |
| HpyF3I | CTNAG | 3 cut(s) | 429, 549, 555 |
| HpySE526I | ACGT | 2 cut(s) | 60, 364 |
| HspAI | GCGC | 2 cut(s) | 179, 288 |
| Ksp22I | TGATCA | 1 cut(s) | 346 |
| Kzo9I | GATC | 5 cut(s) | 67, 72, 126, 338, 346 |
| LmnI | GCTCC | 2 cut(s) | 488, 536 |
| LpnPI | CCDG | 9 cut(s) | 66, 110, 132, 204, 231, 293, 336, 432, 481 |
| MaeI | CTAG | 1 cut(s) | 354 |
| MaeII | ACGT | 2 cut(s) | 60, 364 |
| MalI | GATC | 5 cut(s) | 69, 74, 128, 340, 348 |
| MbiI | CCGCTC | 1 cut(s) | 483 |
| MboI | GATC | 5 cut(s) | 67, 72, 126, 338, 346 |
| MboII | GAAGA | 3 cut(s) | 313, 316, 571 |
| MhlI | GDGCHC | 2 cut(s) | 118, 135 |
| MluCI | AATT | 1 cut(s) | 378 |
| MmeI | TCCRAC | 2 cut(s) | 69, 545 |
| MslI | CAYNNNNRTG | 1 cut(s) | 161 |
| MspI | CCGG | 3 cut(s) | 53, 97, 119 |
| MspR9I | CCNGG | 2 cut(s) | 98, 219 |
| MvaI | CCWGG | 1 cut(s) | 219 |
| MvnI | CGCG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 239 |
| NciI | CCSGG | 1 cut(s) | 98 |
| NdeII | GATC | 5 cut(s) | 67, 72, 126, 338, 346 |
| NlaIV | GGNNCC | 4 cut(s) | 117, 154, 197, 321 |
| PaeR7I | CTCGAG | 1 cut(s) | 243 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 533 |
| PfoI | TCCNGGA | 1 cut(s) | 96 |
| PkrI | GCNGC | 1 cut(s) | 482 |
| Ple19I | CGATCG | 1 cut(s) | 70 |
| PmaCI | CACGTG | 1 cut(s) | 365 |
| PmlI | CACGTG | 1 cut(s) | 365 |
| Ppu21I | YACGTR | 1 cut(s) | 365 |
| PpuMI | RGGWCCY | 1 cut(s) | 195 |
| Psp5II | RGGWCCY | 1 cut(s) | 195 |
| Psp6I | CCWGG | 1 cut(s) | 217 |
| PspCI | CACGTG | 1 cut(s) | 365 |
| PspGI | CCWGG | 1 cut(s) | 217 |
| PspN4I | GGNNCC | 4 cut(s) | 117, 154, 197, 321 |
| PspPI | GGNCC | 4 cut(s) | 42, 91, 153, 195 |
| PspPPI | RGGWCCY | 1 cut(s) | 195 |
| PspXI | VCTCGAGB | 1 cut(s) | 243 |
| PvuI | CGATCG | 1 cut(s) | 70 |
| RsaI | GTAC | 2 cut(s) | 212, 494 |
| RsaNI | GTAC | 2 cut(s) | 211, 493 |
| RseI | CAYNNNNRTG | 1 cut(s) | 161 |
| SatI | GCNGC | 1 cut(s) | 481 |
| Sau3AI | GATC | 5 cut(s) | 67, 72, 126, 338, 346 |
| Sau96I | GGNCC | 4 cut(s) | 42, 91, 153, 195 |
| ScaI | AGTACT | 1 cut(s) | 494 |
| ScrFI | CCNGG | 2 cut(s) | 98, 219 |
| SduI | GDGCHC | 2 cut(s) | 118, 135 |
| SetI | ASST | 6 cut(s) | 63, 96, 367, 421, 568, 578 |
| Sfr274I | CTCGAG | 1 cut(s) | 243 |
| SgrAI | CRCCGGYG | 1 cut(s) | 118 |
| SinI | GGWCC | 3 cut(s) | 91, 153, 195 |
| SlaI | CTCGAG | 1 cut(s) | 243 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 161 |
| SmlI | CTYRAG | 1 cut(s) | 243 |
| SmoI | CTYRAG | 1 cut(s) | 243 |
| Sse9I | AATT | 1 cut(s) | 378 |
| SsiI | CCGC | 5 cut(s) | 18, 111, 122, 215, 481 |
| SspMI | CTAG | 1 cut(s) | 354 |
| StyD4I | CCNGG | 2 cut(s) | 96, 217 |
| StyI | CCWWGG | 1 cut(s) | 486 |
| TaiI | ACGT | 2 cut(s) | 63, 367 |
| TaqI | TCGA | 3 cut(s) | 129, 244, 435 |
| TasI | AATT | 1 cut(s) | 378 |
| TatI | WGTACW | 1 cut(s) | 492 |
| TauI | GCSGC | 1 cut(s) | 483 |
| TscAI | CASTG | 1 cut(s) | 244 |
| TspDTI | ATGAA | 1 cut(s) | 267 |
| TspGWI | ACGGA | 2 cut(s) | 149, 413 |
| TspRI | CASTG | 1 cut(s) | 244 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 533 |
| VpaK11BI | GGWCC | 3 cut(s) | 91, 153, 195 |
| XhoI | CTCGAG | 1 cut(s) | 243 |
| XspI | CTAG | 1 cut(s) | 354 |
| ZrmI | AGTACT | 1 cut(s) | 494 |