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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 36 |
| AccII | CGCG | 2 cut(s) | 181, 183 |
| AciI | CCGC | 2 cut(s) | 107, 110 |
| AclWI | GGATC | 2 cut(s) | 76, 140 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 163, 204, 229, 257 |
| AluBI | AGCT | 1 cut(s) | 7 |
| AluI | AGCT | 1 cut(s) | 7 |
| Alw26I | GTCTC | 1 cut(s) | 53 |
| AlwI | GGATC | 2 cut(s) | 76, 140 |
| AoxI | GGCC | 1 cut(s) | 232 |
| ApeKI | GCWGC | 1 cut(s) | 245 |
| AspLEI | GCGC | 2 cut(s) | 183, 250 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| AsuC2I | CCSGG | 1 cut(s) | 150 |
| AsuHPI | GGTGA | 1 cut(s) | 155 |
| BbsI | GAAGAC | 1 cut(s) | 35 |
| BbvI | GCAGC | 1 cut(s) | 257 |
| BceAI | ACGGC | 1 cut(s) | 182 |
| BclI | TGATCA | 1 cut(s) | 280 |
| BcnI | CCSGG | 1 cut(s) | 150 |
| BcoDI | GTCTC | 1 cut(s) | 53 |
| BfaI | CTAG | 1 cut(s) | 128 |
| BfoI | RGCGCY | 1 cut(s) | 251 |
| BglII | AGATCT | 1 cut(s) | 262 |
| BisI | GCNGC | 2 cut(s) | 108, 246 |
| BlsI | GCNGC | 2 cut(s) | 109, 247 |
| Bme1390I | CCNGG | 1 cut(s) | 150 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmrFI | CCNGG | 1 cut(s) | 150 |
| BmrI | ACTGGG | 1 cut(s) | 97 |
| BmsI | GCATC | 1 cut(s) | 184 |
| BmuI | ACTGGG | 1 cut(s) | 97 |
| BpiI | GAAGAC | 1 cut(s) | 35 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 260, 292 |
| BpmI | CTGGAG | 2 cut(s) | 279, 287 |
| BpuMI | CCSGG | 1 cut(s) | 150 |
| BsaBI | GATNNNNATC | 1 cut(s) | 36 |
| BsaWI | WCCGGW | 1 cut(s) | 82 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 163, 204, 229, 257 |
| Bse1I | ACTGG | 3 cut(s) | 92, 209, 262 |
| Bse8I | GATNNNNATC | 1 cut(s) | 36 |
| BseGI | GGATG | 1 cut(s) | 107 |
| BseJI | GATNNNNATC | 1 cut(s) | 36 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 163, 204, 229, 257 |
| BseMII | CTCAG | 2 cut(s) | 38, 179 |
| BseNI | ACTGG | 3 cut(s) | 92, 209, 262 |
| BseXI | GCAGC | 1 cut(s) | 257 |
| Bsh1236I | CGCG | 2 cut(s) | 181, 183 |
| Bsh1285I | CGRYCG | 2 cut(s) | 83, 157 |
| BshFI | GGCC | 1 cut(s) | 234 |
| BsiEI | CGRYCG | 2 cut(s) | 83, 157 |
| BsiSI | CCGG | 4 cut(s) | 56, 83, 149, 251 |
| BslFI | GGGAC | 1 cut(s) | 180 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 163, 204, 229, 257 |
| BsmAI | GTCTC | 1 cut(s) | 53 |
| BsmFI | GGGAC | 1 cut(s) | 180 |
| BsnI | GGCC | 1 cut(s) | 234 |
| Bsp143I | GATC | 4 cut(s) | 68, 145, 262, 280 |
| BspACI | CCGC | 2 cut(s) | 107, 110 |
| BspANI | GGCC | 1 cut(s) | 234 |
| BspCNI | CTCAG | 2 cut(s) | 39, 180 |
| BspFNI | CGCG | 2 cut(s) | 181, 183 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspPI | GGATC | 2 cut(s) | 76, 140 |
| BsrI | ACTGG | 3 cut(s) | 92, 209, 262 |
| BssMI | GATC | 4 cut(s) | 68, 145, 262, 280 |
| BstDEI | CTNAG | 2 cut(s) | 47, 188 |
| BstF5I | GGATG | 1 cut(s) | 107 |
| BstFNI | CGCG | 2 cut(s) | 181, 183 |
| BstH2I | RGCGCY | 1 cut(s) | 251 |
| BstHHI | GCGC | 2 cut(s) | 183, 250 |
| BstKTI | GATC | 4 cut(s) | 71, 148, 265, 283 |
| BstMAI | GTCTC | 1 cut(s) | 53 |
| BstMBI | GATC | 4 cut(s) | 68, 145, 262, 280 |
| BstMCI | CGRYCG | 2 cut(s) | 83, 157 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 159 |
| BstSCI | CCNGG | 1 cut(s) | 148 |
| BstUI | CGCG | 2 cut(s) | 181, 183 |
| BstV1I | GCAGC | 1 cut(s) | 257 |
| BstV2I | GAAGAC | 1 cut(s) | 35 |
| BstX2I | RGATCY | 1 cut(s) | 262 |
| BstYI | RGATCY | 1 cut(s) | 262 |
| BsuRI | GGCC | 1 cut(s) | 234 |
| BtsCI | GGATG | 1 cut(s) | 107 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 2 cut(s) | 183, 250 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| CviAII | CATG | 1 cut(s) | 284 |
| CviJI | RGCY | 5 cut(s) | 7, 55, 127, 140, 234 |
| CviKI_1 | RGCY | 5 cut(s) | 7, 55, 127, 140, 234 |
| DdeI | CTNAG | 2 cut(s) | 47, 188 |
| DpnI | GATC | 4 cut(s) | 70, 147, 264, 282 |
| DpnII | GATC | 4 cut(s) | 68, 145, 262, 280 |
| EciI | GGCGGA | 1 cut(s) | 125 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| FaeI | CATG | 1 cut(s) | 287 |
| FaiI | YATR | 3 cut(s) | 36, 210, 285 |
| FaqI | GGGAC | 1 cut(s) | 180 |
| FatI | CATG | 1 cut(s) | 283 |
| FbaI | TGATCA | 1 cut(s) | 280 |
| Fnu4HI | GCNGC | 2 cut(s) | 108, 246 |
| FokI | GGATG | 1 cut(s) | 114 |
| Fsp4HI | GCNGC | 2 cut(s) | 108, 246 |
| FspBI | CTAG | 1 cut(s) | 128 |
| GlaI | GCGC | 2 cut(s) | 182, 249 |
| GluI | GCNGC | 2 cut(s) | 108, 246 |
| GsuI | CTGGAG | 2 cut(s) | 279, 287 |
| HaeII | RGCGCY | 1 cut(s) | 251 |
| HaeIII | GGCC | 1 cut(s) | 234 |
| HapII | CCGG | 4 cut(s) | 56, 83, 149, 251 |
| HhaI | GCGC | 2 cut(s) | 183, 250 |
| Hin1II | CATG | 1 cut(s) | 287 |
| Hin6I | GCGC | 2 cut(s) | 181, 248 |
| HinP1I | GCGC | 2 cut(s) | 181, 248 |
| HinfI | GANTC | 1 cut(s) | 273 |
| HpaII | CCGG | 4 cut(s) | 56, 83, 149, 251 |
| HphI | GGTGA | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 2 cut(s) | 19, 202 |
| Hpy188I | TCNGA | 3 cut(s) | 48, 101, 280 |
| Hpy188III | TCNNGA | 2 cut(s) | 266, 284 |
| Hpy8I | GTNNAC | 2 cut(s) | 19, 202 |
| Hpy99I | CGWCG | 1 cut(s) | 138 |
| HpyAV | CCTTC | 1 cut(s) | 59 |
| HpyCH4IV | ACGT | 1 cut(s) | 293 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 159 |
| HpyF3I | CTNAG | 2 cut(s) | 47, 188 |
| HpySE526I | ACGT | 1 cut(s) | 293 |
| Hsp92II | CATG | 1 cut(s) | 287 |
| HspAI | GCGC | 2 cut(s) | 181, 248 |
| Ksp22I | TGATCA | 1 cut(s) | 280 |
| Kzo9I | GATC | 4 cut(s) | 68, 145, 262, 280 |
| LmnI | GCTCC | 1 cut(s) | 216 |
| Lsp1109I | GCAGC | 1 cut(s) | 257 |
| LweI | GCATC | 1 cut(s) | 184 |
| MaeI | CTAG | 1 cut(s) | 128 |
| MaeII | ACGT | 1 cut(s) | 293 |
| MalI | GATC | 4 cut(s) | 70, 147, 264, 282 |
| MboI | GATC | 4 cut(s) | 68, 145, 262, 280 |
| MboII | GAAGA | 1 cut(s) | 35 |
| MflI | RGATCY | 1 cut(s) | 262 |
| MnlI | CCTC | 1 cut(s) | 42 |
| MspI | CCGG | 4 cut(s) | 56, 83, 149, 251 |
| MspR9I | CCNGG | 1 cut(s) | 150 |
| MvnI | CGCG | 2 cut(s) | 181, 183 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 159 |
| NciI | CCSGG | 1 cut(s) | 150 |
| NdeII | GATC | 4 cut(s) | 68, 145, 262, 280 |
| NlaIII | CATG | 1 cut(s) | 287 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 130 |
| PfeI | GAWTC | 1 cut(s) | 273 |
| PflFI | GACNNNGTC | 1 cut(s) | 89 |
| PkrI | GCNGC | 2 cut(s) | 109, 247 |
| PsiI | TTATAA | 1 cut(s) | 36 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| PsuI | RGATCY | 1 cut(s) | 262 |
| PsyI | GACNNNGTC | 1 cut(s) | 89 |
| SatI | GCNGC | 2 cut(s) | 108, 246 |
| Sau3AI | GATC | 4 cut(s) | 68, 145, 262, 280 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| ScrFI | CCNGG | 1 cut(s) | 150 |
| SetI | ASST | 3 cut(s) | 9, 179, 296 |
| SfaNI | GCATC | 1 cut(s) | 184 |
| SsiI | CCGC | 2 cut(s) | 107, 110 |
| SspMI | CTAG | 1 cut(s) | 128 |
| StyD4I | CCNGG | 1 cut(s) | 148 |
| TaiI | ACGT | 1 cut(s) | 296 |
| TaqI | TCGA | 1 cut(s) | 71 |
| TaqII | GACCGA | 1 cut(s) | 171 |
| TauI | GCSGC | 1 cut(s) | 110 |
| TfiI | GAWTC | 1 cut(s) | 273 |
| TseI | GCWGC | 1 cut(s) | 245 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 2 cut(s) | 229, 254 |
| Tth111I | GACNNNGTC | 1 cut(s) | 89 |
| XspI | CTAG | 1 cut(s) | 128 |