Rw3G006070

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
5407075 .. 5408353
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G006070.1

Sequence Viewer

Length: 1239 bp
ATGGTAGGGTTTTGCAAGATCACAGAAGAGATAGTGATGCAAATCCTATCAAGGACGCCTCCTAAATCTCTAATGCGATTCAAGTGTATCCACAAGTCATGGTATTCTATGATCAATGATCCACAATTTGCAGCCAAACATCTTCACTTTTACAACAATGCATCTTCCTCCACTGCCTTCCTCGTCAAGCGTCCTGTCATCCTCAGAAGCGAAACGAGCAATGAGAACGTTGTACTTTCATATCTTCGTCTAGAAACTTATGGTAATGGTGATGATGAAGACCTTCATTTCGTAGTTGAAGACCTCATTTTTCCATCTTGTAAGGGTCTAAAGGCTAGGGGCCAATTTATTGAGCTCCCTGGACGCGATGATTCTGTGTATATTATTAATCATTGTGATGGCATCATTTTTCTGACTCTGAATACGGGCAACCTTTTCTTGTACAATCCAGCAATCAAAGAATTCAAGATTATTCCGGCGTCATGTTGTCATGATTGTTTCTGGAGTATGGTGGGATTTGGATATGATCTCAAATGTAAAGATTACATAATTCTAGAAATTGCTTCTTATGGTGAGACAAATTATGACGATCCTCGGCGTCTCATTGTTGATCCCCCTAAAGCTGCAGTTTACACACTAGGCATTGATTCTTGGAGAAAGATCAAGACTGATCACTTACAGACGGAAGATACCTACTTTTGGCCTACTGCGTTCGATTTGTACTCCAAGGGAATTTTCTATTGGTTTGGTTATGAGGAAAAGAAAGAGTTCTTGGATGACATGGAAAGATGTGAGGAGACAAACAAGCAAGTGATGATTTTGTATGATACAGGAGATGGGCTATTTCATATTGCAATGCTTCCGGATAGTTTCAATGAGTCTGCATGCGGCGTTCATGATATTCATGTTGCATTGTTGAATAAGTCTATTGCTCTTTATGGTTTTAGCATTTTCGAATCAATTCATTCCATTCAAATATGGGTAACGGATGACATTCGAGGCGTTGAGGAATCTTGGACAAAATATTTGTCCTTAGAGCCGGTAGATGCTGTTCGGAGGTCATTAGCCTTTTGGAAGATGGACGAGGTTCTTATGATTGCCAAAGATGGACGTGTAGTCCTCTATAACCTCCTTACCGGAAAGCTCAAGTATTTTCCCATTCATGGCCTGCACCTAGGAGATGATATTCAGGGCATTGTTTGTGTAGATAGTATAGTTTCAGTTGAGGGAAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

47.34

Weight (kDa)

5.27

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 43 1.4e-06 F-box domain
FBA_1 PF07734 112 - 374 1.6e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 366
AccIII TCCGGA 1 cut(s) 862
AciI CCGC 1 cut(s) 888
AclI AACGTT 1 cut(s) 228
AclWI GGATC 3 cut(s) 113, 584, 605
AcsI RAATTY 2 cut(s) 461, 732
AcyI GRCGYC 3 cut(s) 56, 479, 598
AfaI GTAC 3 cut(s) 234, 443, 722
AfiI CCNNNNNNNGG 2 cut(s) 699, 1163
AflIII ACRYGT 1 cut(s) 1111
AgsI TTSAA 6 cut(s) 82, 299, 466, 874, 919, 974
AhdI GACNNNNNGTC 1 cut(s) 1115
AjiI CACGTC 1 cut(s) 1112
AjnI CCWGG 1 cut(s) 358
AjuI GAANNNNNNNTTGG 6 cut(s) 719, 724, 751, 755, 756, 787
AluBI AGCT 3 cut(s) 355, 623, 1144
AluI AGCT 3 cut(s) 355, 623, 1144
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 569, 605, 791
AlwI GGATC 3 cut(s) 113, 584, 605
Aor13HI TCCGGA 1 cut(s) 862
AoxI GGCC 3 cut(s) 340, 701, 1165
ApeKI GCWGC 2 cut(s) 131, 623
ApoI RAATTY 2 cut(s) 461, 732
ArsI GACNNNNNNTTYG 6 cut(s) 272, 304, 1009, 1013, 1041, 1045
AseI ATTAAT 1 cut(s) 387
Asp700I GAANNNNTTC 3 cut(s) 282, 767, 960
AspA2I CCTAGG 1 cut(s) 1174
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 281, 584
AsuII TTCGAA 1 cut(s) 954
AvrII CCTAGG 1 cut(s) 1174
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 2 cut(s) 285, 306
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 143, 610
BccI CCATC 5 cut(s) 322, 392, 830, 1072, 1100
BciT130I CCWGG 1 cut(s) 360
BciVI GTATCC 1 cut(s) 98
BclI TGATCA 2 cut(s) 111, 670
BcoDI GTCTC 3 cut(s) 569, 605, 791
BfaI CTAG 5 cut(s) 251, 336, 554, 638, 1175
BfmI CTRYAG 1 cut(s) 624
BfuI GTATCC 1 cut(s) 98
BisI GCNGC 3 cut(s) 132, 624, 889
BlnI CCTAGG 1 cut(s) 1174
BlsI GCNGC 3 cut(s) 133, 625, 890
Bme1390I CCNGG 1 cut(s) 360
BmeRI GACNNNNNGTC 1 cut(s) 1115
BmgBI CACGTC 1 cut(s) 1112
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 4 cut(s) 27, 170, 411, 1036
BpiI GAAGAC 2 cut(s) 285, 306
BpmI CTGGAG 1 cut(s) 523
Bpu14I TTCGAA 1 cut(s) 954
BpuEI CTTGAG 1 cut(s) 1130
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 3 cut(s) 56, 479, 598
BsaJI CCNNGG 4 cut(s) 358, 593, 726, 1174
BsaWI WCCGGW 2 cut(s) 862, 1136
Bsc4I CCNNNNNNNGG 2 cut(s) 699, 1163
Bse118I RCCGGY 1 cut(s) 1039
Bse3DI GCAATG 2 cut(s) 226, 861
Bse8I GATNNNNATC 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 862
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 4 cut(s) 358, 593, 726, 1174
BseGI GGATG 3 cut(s) 198, 781, 994
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 699, 1163
BseMI GCAATG 2 cut(s) 226, 861
BseMII CTCAG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 809
BseXI GCAGC 2 cut(s) 143, 610
BsgI GTGCAG 1 cut(s) 1154
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 3 cut(s) 342, 703, 1167
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 4 cut(s) 476, 863, 1040, 1137
BslI CCNNNNNNNGG 2 cut(s) 699, 1163
BsmAI GTCTC 3 cut(s) 569, 605, 791
BsmBI CGTCTC 1 cut(s) 605
BsnI GGCC 3 cut(s) 342, 703, 1167
Bsp119I TTCGAA 1 cut(s) 954
Bsp1286I GDGCHC 1 cut(s) 357
Bsp13I TCCGGA 1 cut(s) 862
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 8 cut(s) 18, 111, 118, 526, 589, 610, 660, 670
BspACI CCGC 1 cut(s) 888
BspANI GGCC 3 cut(s) 342, 703, 1167
BspCNI CTCAG 1 cut(s) 216
BspEI TCCGGA 1 cut(s) 862
BspFNI CGCG 1 cut(s) 366
BspHI TCATGA 2 cut(s) 490, 895
BspLI GGNNCC 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 3 cut(s) 113, 584, 605
BspT104I TTCGAA 1 cut(s) 954
BsrDI GCAATG 2 cut(s) 226, 861
BsrFI RCCGGY 1 cut(s) 1039
BsrGI TGTACA 1 cut(s) 441
BssAI RCCGGY 1 cut(s) 1039
BssECI CCNNGG 4 cut(s) 358, 593, 726, 1174
BssMI GATC 8 cut(s) 18, 111, 118, 526, 589, 610, 660, 670
BssNI GRCGYC 3 cut(s) 56, 479, 598
BssT1I CCWWGG 2 cut(s) 726, 1174
Bst2UI CCWGG 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 3 cut(s) 56, 479, 598
BstAUI TGTACA 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 954
BstC8I GCNNGC 2 cut(s) 886, 1169
BstDEI CTNAG 2 cut(s) 203, 1033
BstF5I GGATG 3 cut(s) 198, 781, 994
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 8 cut(s) 21, 114, 121, 529, 592, 613, 663, 673
BstMAI GTCTC 3 cut(s) 569, 605, 791
BstMBI GATC 8 cut(s) 18, 111, 118, 526, 589, 610, 660, 670
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 888
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 143, 610
BstV2I GAAGAC 2 cut(s) 285, 306
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 3 cut(s) 342, 703, 1167
BtgZI GCGATG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 1112
BtsCI GGATG 3 cut(s) 198, 781, 994
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 886, 1169
CciI TCATGA 2 cut(s) 490, 895
Cfr10I RCCGGY 1 cut(s) 1039
Cfr13I GGNCC 1 cut(s) 340
CseI GACGC 5 cut(s) 64, 179, 372, 468, 587
Csp6I GTAC 3 cut(s) 233, 442, 721
CviAII CATG 8 cut(s) 99, 483, 491, 781, 885, 896, 905, 1163
CviQI GTAC 3 cut(s) 233, 442, 721
DdeI CTNAG 2 cut(s) 203, 1033
DpnI GATC 8 cut(s) 20, 113, 120, 528, 591, 612, 662, 672
DpnII GATC 8 cut(s) 18, 111, 118, 526, 589, 610, 660, 670
DriI GACNNNNNGTC 1 cut(s) 1115
Eam1104I CTCTTC 1 cut(s) 21
Eam1105I GACNNNNNGTC 1 cut(s) 1115
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 2 cut(s) 726, 1174
Eco24I GRGCYC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 726, 1174
EcoT22I ATGCAT 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 2 cut(s) 726, 1174
Esp3I CGTCTC 1 cut(s) 605
FaeI CATG 8 cut(s) 102, 486, 494, 784, 888, 899, 908, 1166
FatI CATG 8 cut(s) 98, 482, 490, 780, 884, 895, 904, 1162
FbaI TGATCA 2 cut(s) 111, 670
Fnu4HI GCNGC 3 cut(s) 132, 624, 889
FokI GGATG 3 cut(s) 185, 788, 1001
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 132, 624, 889
FspBI CTAG 5 cut(s) 251, 336, 554, 638, 1175
GluI GCNGC 3 cut(s) 132, 624, 889
GsuI CTGGAG 1 cut(s) 523
HaeIII GGCC 3 cut(s) 342, 703, 1167
HapII CCGG 4 cut(s) 476, 863, 1040, 1137
HgaI GACGC 5 cut(s) 64, 179, 372, 468, 587
Hin1I GRCGYC 3 cut(s) 56, 479, 598
Hin1II CATG 8 cut(s) 102, 486, 494, 784, 888, 899, 908, 1166
HinfI GANTC 7 cut(s) 78, 371, 415, 647, 878, 956, 1010
HpaII CCGG 4 cut(s) 476, 863, 1040, 1137
HphI GGTGA 2 cut(s) 281, 584
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 4 cut(s) 206, 414, 420, 1056
Hpy188III TCNNGA 8 cut(s) 251, 466, 491, 502, 554, 664, 863, 896
Hpy8I GTNNAC 1 cut(s) 631
HpyAV CCTTC 2 cut(s) 187, 293
HpyCH4IV ACGT 2 cut(s) 228, 1111
HpyCH4V TGCA 9 cut(s) 15, 40, 131, 161, 626, 854, 884, 911, 1171
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 203, 1033
HpySE526I ACGT 2 cut(s) 228, 1111
Hsp92I GRCGYC 3 cut(s) 56, 479, 598
Hsp92II CATG 8 cut(s) 102, 486, 494, 784, 888, 899, 908, 1166
Kpn2I TCCGGA 1 cut(s) 862
Ksp22I TGATCA 2 cut(s) 111, 670
Kzo9I GATC 8 cut(s) 18, 111, 118, 526, 589, 610, 660, 670
LmnI GCTCC 1 cut(s) 360
Lsp1109I GCAGC 2 cut(s) 143, 610
LweI GCATC 4 cut(s) 27, 170, 411, 1036
MaeI CTAG 5 cut(s) 251, 336, 554, 638, 1175
MaeII ACGT 2 cut(s) 228, 1111
MaeIII GTNAC 1 cut(s) 982
MalI GATC 8 cut(s) 20, 113, 120, 528, 591, 612, 662, 672
MboI GATC 8 cut(s) 18, 111, 118, 526, 589, 610, 660, 670
MboII GAAGA 8 cut(s) 38, 134, 156, 236, 290, 311, 698, 1087
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 8 cut(s) 125, 344, 461, 549, 558, 580, 732, 960
MlyI GAGTC 2 cut(s) 409, 887
Mph1103I ATGCAT 1 cut(s) 163
MroI TCCGGA 1 cut(s) 862
MroXI GAANNNNTTC 3 cut(s) 282, 767, 960
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 4 cut(s) 476, 863, 1040, 1137
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 8 cut(s) 18, 111, 118, 526, 589, 610, 660, 670
NlaIII CATG 8 cut(s) 102, 486, 494, 784, 888, 899, 908, 1166
NlaIV GGNNCC 1 cut(s) 341
NmeAIII GCCGAG 1 cut(s) 574
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 1 cut(s) 888
NspV TTCGAA 1 cut(s) 954
PaeI GCATGC 1 cut(s) 888
PagI TCATGA 2 cut(s) 490, 895
PdmI GAANNNNTTC 3 cut(s) 282, 767, 960
PfeI GAWTC 5 cut(s) 78, 371, 647, 956, 1010
PkrI GCNGC 3 cut(s) 133, 625, 890
PleI GAGTC 2 cut(s) 409, 886
PpsI GAGTC 2 cut(s) 409, 886
PshBI ATTAAT 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 340
PsrI GAACNNNNNNTAC 2 cut(s) 1035, 1067
PstI CTGCAG 1 cut(s) 628
RsaI GTAC 3 cut(s) 234, 443, 722
RsaNI GTAC 3 cut(s) 233, 442, 721
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 3 cut(s) 132, 624, 889
Sau3AI GATC 8 cut(s) 18, 111, 118, 526, 589, 610, 660, 670
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 2 cut(s) 409, 887
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 357
SfaNI GCATC 4 cut(s) 27, 170, 411, 1036
SfcI CTRYAG 1 cut(s) 624
SfuI TTCGAA 1 cut(s) 954
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 1145
SmoI CTYRAG 1 cut(s) 1145
SphI GCATGC 1 cut(s) 888
Sse9I AATT 8 cut(s) 125, 344, 461, 549, 558, 580, 732, 960
SsiI CCGC 1 cut(s) 888
SspI AATATT 1 cut(s) 1025
SspMI CTAG 5 cut(s) 251, 336, 554, 638, 1175
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 2 cut(s) 726, 1174
TaiI ACGT 2 cut(s) 231, 1114
TaqI TCGA 3 cut(s) 714, 954, 997
TasI AATT 8 cut(s) 125, 344, 461, 549, 558, 580, 732, 960
TatI WGTACW 3 cut(s) 232, 441, 720
TauI GCSGC 1 cut(s) 891
TfiI GAWTC 5 cut(s) 78, 371, 647, 956, 1010
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 178
TseI GCWGC 2 cut(s) 131, 623
TspDTI ATGAA 8 cut(s) 228, 275, 291, 836, 884, 893, 953, 1151
TspGWI ACGGA 2 cut(s) 698, 1001
TspRI CASTG 1 cut(s) 178
VspI ATTAAT 1 cut(s) 387
XapI RAATTY 2 cut(s) 461, 732
XbaI TCTAGA 2 cut(s) 250, 553
XceI RCATGY 1 cut(s) 888
XmaJI CCTAGG 1 cut(s) 1174
XmnI GAANNNNTTC 3 cut(s) 282, 767, 960
XspI CTAG 5 cut(s) 251, 336, 554, 638, 1175
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.