Class S F-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aa_trans | PF01490 | 80 - 493 | 3.1e-53 | Transmembrane amino acid transporter protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1033 |
| AccB1I | GGYRCC | 3 cut(s) | 713, 1033, 1309 |
| AciI | CCGC | 2 cut(s) | 203, 797 |
| AclWI | GGATC | 3 cut(s) | 599, 601, 782 |
| AcoI | YGGCCR | 2 cut(s) | 332, 654 |
| AcsI | RAATTY | 2 cut(s) | 423, 923 |
| AcuI | CTGAAG | 1 cut(s) | 1495 |
| AfaI | GTAC | 5 cut(s) | 399, 523, 531, 739, 1035 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 234, 696, 1298, 1319 |
| AflII | CTTAAG | 1 cut(s) | 1141 |
| AflIII | ACRYGT | 2 cut(s) | 524, 783 |
| AgsI | TTSAA | 1 cut(s) | 759 |
| Alw21I | GWGCWC | 1 cut(s) | 198 |
| Alw26I | GTCTC | 1 cut(s) | 706 |
| AlwI | GGATC | 3 cut(s) | 599, 601, 782 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 419 |
| AoxI | GGCC | 6 cut(s) | 32, 332, 654, 1435, 1492, 1514 |
| ApeKI | GCWGC | 3 cut(s) | 373, 1277, 1466 |
| ApoI | RAATTY | 2 cut(s) | 423, 923 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1321, 1353 |
| Asp718I | GGTACC | 1 cut(s) | 1033 |
| AspLEI | GCGC | 2 cut(s) | 65, 1223 |
| AspS9I | GGNCC | 1 cut(s) | 903 |
| AsuHPI | GGTGA | 5 cut(s) | 203, 217, 1180, 1339, 1411 |
| AsuII | TTCGAA | 1 cut(s) | 1234 |
| AsuNHI | GCTAGC | 1 cut(s) | 257 |
| AvaII | GGWCC | 1 cut(s) | 903 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 513, 546 |
| BalI | TGGCCA | 2 cut(s) | 334, 656 |
| BanI | GGYRCC | 3 cut(s) | 713, 1033, 1309 |
| BanII | GRGCYC | 1 cut(s) | 198 |
| BauI | CACGAG | 1 cut(s) | 87 |
| Bbv12I | GWGCWC | 1 cut(s) | 198 |
| BbvI | GCAGC | 3 cut(s) | 385, 1289, 1453 |
| BccI | CCATC | 4 cut(s) | 107, 324, 584, 989 |
| BceAI | ACGGC | 1 cut(s) | 1507 |
| BclI | TGATCA | 1 cut(s) | 130 |
| BcoDI | GTCTC | 1 cut(s) | 706 |
| BfaI | CTAG | 6 cut(s) | 117, 258, 449, 488, 1200, 1224 |
| BfmI | CTRYAG | 2 cut(s) | 723, 996 |
| BfrI | CTTAAG | 1 cut(s) | 1141 |
| BisI | GCNGC | 3 cut(s) | 374, 1278, 1467 |
| BlsI | GCNGC | 3 cut(s) | 375, 1279, 1468 |
| Bme18I | GGWCC | 1 cut(s) | 903 |
| BmgT120I | GGNCC | 1 cut(s) | 903 |
| BmiI | GGNNCC | 5 cut(s) | 498, 715, 904, 1035, 1311 |
| BmsI | GCATC | 3 cut(s) | 130, 1418, 1478 |
| BmtI | GCTAGC | 1 cut(s) | 261 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1432 |
| Bpu14I | TTCGAA | 1 cut(s) | 1234 |
| BpuEI | CTTGAG | 1 cut(s) | 911 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1373 |
| BsaI | GGTCTC | 1 cut(s) | 706 |
| BsaJI | CCNNGG | 2 cut(s) | 335, 690 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 234, 696, 1298, 1319 |
| Bse1I | ACTGG | 4 cut(s) | 35, 500, 625, 1128 |
| Bse3DI | GCAATG | 3 cut(s) | 250, 459, 810 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1373 |
| BseDI | CCNNGG | 2 cut(s) | 335, 690 |
| BseGI | GGATG | 5 cut(s) | 145, 335, 595, 1368, 1433 |
| BseJI | GATNNNNATC | 1 cut(s) | 1373 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 234, 696, 1298, 1319 |
| BseMI | GCAATG | 3 cut(s) | 250, 459, 810 |
| BseMII | CTCAG | 1 cut(s) | 683 |
| BseNI | ACTGG | 4 cut(s) | 35, 500, 625, 1128 |
| BseRI | GAGGAG | 3 cut(s) | 966, 1030, 1275 |
| BseXI | GCAGC | 3 cut(s) | 385, 1289, 1453 |
| BseYI | CCCAGC | 2 cut(s) | 475, 1105 |
| BsgI | GTGCAG | 1 cut(s) | 69 |
| BshFI | GGCC | 6 cut(s) | 34, 334, 656, 1437, 1494, 1516 |
| BshNI | GGYRCC | 3 cut(s) | 713, 1033, 1309 |
| BsiHKAI | GWGCWC | 1 cut(s) | 198 |
| BslFI | GGGAC | 4 cut(s) | 105, 916, 1122, 1434 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 234, 696, 1298, 1319 |
| BsmAI | GTCTC | 1 cut(s) | 706 |
| BsmFI | GGGAC | 4 cut(s) | 105, 916, 1122, 1434 |
| BsmI | GAATGC | 3 cut(s) | 362, 847, 866 |
| BsnI | GGCC | 6 cut(s) | 34, 334, 656, 1437, 1494, 1516 |
| Bso31I | GGTCTC | 1 cut(s) | 706 |
| Bsp119I | TTCGAA | 1 cut(s) | 1234 |
| Bsp1286I | GDGCHC | 1 cut(s) | 198 |
| Bsp1407I | TGTACA | 1 cut(s) | 529 |
| Bsp143I | GATC | 5 cut(s) | 130, 593, 604, 774, 1059 |
| Bsp19I | CCATGG | 1 cut(s) | 335 |
| BspACI | CCGC | 2 cut(s) | 203, 797 |
| BspANI | GGCC | 6 cut(s) | 34, 334, 656, 1437, 1494, 1516 |
| BspCNI | CTCAG | 1 cut(s) | 682 |
| BspLI | GGNNCC | 5 cut(s) | 498, 715, 904, 1035, 1311 |
| BspMAI | CTGCAG | 1 cut(s) | 727 |
| BspOI | GCTAGC | 1 cut(s) | 261 |
| BspPI | GGATC | 3 cut(s) | 599, 601, 782 |
| BspT104I | TTCGAA | 1 cut(s) | 1234 |
| BspT107I | GGYRCC | 3 cut(s) | 713, 1033, 1309 |
| BspTI | CTTAAG | 1 cut(s) | 1141 |
| BspTNI | GGTCTC | 1 cut(s) | 706 |
| BsrDI | GCAATG | 3 cut(s) | 250, 459, 810 |
| BsrGI | TGTACA | 1 cut(s) | 529 |
| BsrI | ACTGG | 4 cut(s) | 35, 500, 625, 1128 |
| BssECI | CCNNGG | 2 cut(s) | 335, 690 |
| BssMI | GATC | 5 cut(s) | 130, 593, 604, 774, 1059 |
| BssSI | CACGAG | 1 cut(s) | 87 |
| BssT1I | CCWWGG | 1 cut(s) | 335 |
| Bst2BI | CACGAG | 1 cut(s) | 87 |
| Bst4CI | ACNGT | 3 cut(s) | 346, 434, 580 |
| BstAFI | CTTAAG | 1 cut(s) | 1141 |
| BstAUI | TGTACA | 1 cut(s) | 529 |
| BstBI | TTCGAA | 1 cut(s) | 1234 |
| BstC8I | GCNNGC | 2 cut(s) | 259, 801 |
| BstDEI | CTNAG | 2 cut(s) | 669, 1432 |
| BstDSI | CCRYGG | 2 cut(s) | 335, 690 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1317 |
| BstF5I | GGATG | 5 cut(s) | 145, 335, 595, 1368, 1433 |
| BstHHI | GCGC | 2 cut(s) | 65, 1223 |
| BstKTI | GATC | 5 cut(s) | 133, 596, 607, 777, 1062 |
| BstMAI | GTCTC | 1 cut(s) | 706 |
| BstMBI | GATC | 5 cut(s) | 130, 593, 604, 774, 1059 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 20, 202, 254, 458, 977 |
| BstNSI | RCATGY | 2 cut(s) | 528, 1216 |
| BstSFI | CTRYAG | 2 cut(s) | 723, 996 |
| BstV1I | GCAGC | 3 cut(s) | 385, 1289, 1453 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 664, 1160 |
| BsuRI | GGCC | 6 cut(s) | 34, 334, 656, 1437, 1494, 1516 |
| BtgI | CCRYGG | 2 cut(s) | 335, 690 |
| BtsCI | GGATG | 5 cut(s) | 145, 335, 595, 1368, 1433 |
| BtsI | GCAGTG | 2 cut(s) | 1135, 1287 |
| BtsIMutI | CAGTG | 2 cut(s) | 1135, 1287 |
| Cac8I | GCNNGC | 2 cut(s) | 259, 801 |
| CaiI | CAGNNNCTG | 1 cut(s) | 419 |
| CfoI | GCGC | 2 cut(s) | 65, 1223 |
| Cfr13I | GGNCC | 1 cut(s) | 903 |
| CseI | GACGC | 1 cut(s) | 218 |
| Csp6I | GTAC | 5 cut(s) | 398, 522, 530, 738, 1034 |
| CviQI | GTAC | 5 cut(s) | 398, 522, 530, 738, 1034 |
| DdeI | CTNAG | 2 cut(s) | 669, 1432 |
| DpnI | GATC | 5 cut(s) | 132, 595, 606, 776, 1061 |
| DpnII | GATC | 5 cut(s) | 130, 593, 604, 774, 1059 |
| EaeI | YGGCCR | 2 cut(s) | 332, 654 |
| Ecl136II | GAGCTC | 1 cut(s) | 196 |
| Eco130I | CCWWGG | 1 cut(s) | 335 |
| Eco147I | AGGCCT | 2 cut(s) | 1437, 1516 |
| Eco24I | GRGCYC | 1 cut(s) | 198 |
| Eco31I | GGTCTC | 1 cut(s) | 706 |
| Eco47I | GGWCC | 1 cut(s) | 903 |
| Eco53kI | GAGCTC | 1 cut(s) | 196 |
| Eco57I | CTGAAG | 1 cut(s) | 1495 |
| EcoICRI | GAGCTC | 1 cut(s) | 196 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1317 |
| EcoO109I | RGGNCCY | 1 cut(s) | 903 |
| EcoRI | GAATTC | 1 cut(s) | 423 |
| EcoT14I | CCWWGG | 1 cut(s) | 335 |
| EcoT38I | GRGCYC | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 335 |
| FaqI | GGGAC | 4 cut(s) | 105, 916, 1122, 1434 |
| FauI | CCCGC | 1 cut(s) | 804 |
| FauNDI | CATATG | 3 cut(s) | 386, 967, 1021 |
| FbaI | TGATCA | 1 cut(s) | 130 |
| Fnu4HI | GCNGC | 3 cut(s) | 374, 1278, 1467 |
| FokI | GGATG | 5 cut(s) | 152, 342, 602, 1375, 1440 |
| FriOI | GRGCYC | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 3 cut(s) | 374, 1278, 1467 |
| FspBI | CTAG | 6 cut(s) | 117, 258, 449, 488, 1200, 1224 |
| GlaI | GCGC | 2 cut(s) | 64, 1222 |
| GluI | GCNGC | 3 cut(s) | 374, 1278, 1467 |
| GsaI | CCCAGC | 2 cut(s) | 479, 1109 |
| HaeIII | GGCC | 6 cut(s) | 34, 334, 656, 1437, 1494, 1516 |
| HgaI | GACGC | 1 cut(s) | 218 |
| HhaI | GCGC | 2 cut(s) | 65, 1223 |
| Hin6I | GCGC | 2 cut(s) | 63, 1221 |
| HinP1I | GCGC | 2 cut(s) | 63, 1221 |
| HphI | GGTGA | 5 cut(s) | 203, 217, 1180, 1339, 1411 |
| Hpy166II | GTNNAC | 3 cut(s) | 400, 530, 1135 |
| Hpy188I | TCNGA | 8 cut(s) | 30, 79, 287, 415, 575, 628, 684, 872 |
| Hpy188III | TCNNGA | 4 cut(s) | 279, 420, 890, 1378 |
| Hpy8I | GTNNAC | 3 cut(s) | 400, 530, 1135 |
| HpyAV | CCTTC | 2 cut(s) | 66, 760 |
| HpyCH4III | ACNGT | 3 cut(s) | 346, 434, 580 |
| HpyCH4IV | ACGT | 3 cut(s) | 167, 783, 1343 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 20, 202, 254, 458, 977 |
| HpyF3I | CTNAG | 2 cut(s) | 669, 1432 |
| HpySE526I | ACGT | 3 cut(s) | 167, 783, 1343 |
| HspAI | GCGC | 2 cut(s) | 63, 1221 |
| KpnI | GGTACC | 1 cut(s) | 1037 |
| Ksp22I | TGATCA | 1 cut(s) | 130 |
| Kzo9I | GATC | 5 cut(s) | 130, 593, 604, 774, 1059 |
| Lsp1109I | GCAGC | 3 cut(s) | 385, 1289, 1453 |
| LweI | GCATC | 3 cut(s) | 130, 1418, 1478 |
| MaeI | CTAG | 6 cut(s) | 117, 258, 449, 488, 1200, 1224 |
| MaeII | ACGT | 3 cut(s) | 167, 783, 1343 |
| MaeIII | GTNAC | 8 cut(s) | 163, 354, 428, 875, 955, 1264, 1282, 1327 |
| MalI | GATC | 5 cut(s) | 132, 595, 606, 776, 1061 |
| MboI | GATC | 5 cut(s) | 130, 593, 604, 774, 1059 |
| MboII | GAAGA | 3 cut(s) | 17, 1219, 1501 |
| MfeI | CAATTG | 1 cut(s) | 759 |
| MhlI | GDGCHC | 1 cut(s) | 198 |
| MlsI | TGGCCA | 2 cut(s) | 334, 656 |
| MluCI | AATT | 7 cut(s) | 145, 175, 423, 759, 923, 1065, 1073 |
| MluNI | TGGCCA | 2 cut(s) | 334, 656 |
| MlyI | GAGTC | 8 cut(s) | 99, 239, 297, 316, 410, 818, 1104, 1196 |
| MmeI | TCCRAC | 2 cut(s) | 1164, 1340 |
| Mox20I | TGGCCA | 2 cut(s) | 334, 656 |
| MscI | TGGCCA | 2 cut(s) | 334, 656 |
| MseI | TTAA | 4 cut(s) | 57, 1142, 1413, 1519 |
| MslI | CAYNNNNRTG | 5 cut(s) | 138, 367, 650, 662, 1083 |
| Msp20I | TGGCCA | 2 cut(s) | 334, 656 |
| MspA1I | CMGCKG | 1 cut(s) | 518 |
| MspCI | CTTAAG | 1 cut(s) | 1141 |
| MunI | CAATTG | 1 cut(s) | 759 |
| Mva1269I | GAATGC | 3 cut(s) | 362, 847, 866 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 20, 202, 254, 458, 977 |
| NcoI | CCATGG | 1 cut(s) | 335 |
| NdeI | CATATG | 3 cut(s) | 386, 967, 1021 |
| NdeII | GATC | 5 cut(s) | 130, 593, 604, 774, 1059 |
| NheI | GCTAGC | 1 cut(s) | 257 |
| NlaIV | GGNNCC | 5 cut(s) | 498, 715, 904, 1035, 1311 |
| NmuCI | GTSAC | 6 cut(s) | 354, 875, 955, 1264, 1282, 1327 |
| NspI | RCATGY | 2 cut(s) | 528, 1216 |
| NspV | TTCGAA | 1 cut(s) | 1234 |
| PceI | AGGCCT | 2 cut(s) | 1437, 1516 |
| PciI | ACATGT | 1 cut(s) | 524 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 789 |
| PctI | GAATGC | 3 cut(s) | 362, 847, 866 |
| PfeI | GAWTC | 4 cut(s) | 25, 80, 282, 410 |
| PkrI | GCNGC | 3 cut(s) | 375, 1279, 1468 |
| PleI | GAGTC | 8 cut(s) | 98, 238, 296, 316, 410, 817, 1104, 1195 |
| PpsI | GAGTC | 8 cut(s) | 98, 238, 296, 316, 410, 817, 1104, 1195 |
| PpuMI | RGGWCCY | 1 cut(s) | 903 |
| PscI | ACATGT | 1 cut(s) | 524 |
| Psp124BI | GAGCTC | 1 cut(s) | 198 |
| Psp5II | RGGWCCY | 1 cut(s) | 903 |
| PspFI | CCCAGC | 2 cut(s) | 475, 1105 |
| PspN4I | GGNNCC | 5 cut(s) | 498, 715, 904, 1035, 1311 |
| PspPI | GGNCC | 1 cut(s) | 903 |
| PspPPI | RGGWCCY | 1 cut(s) | 903 |
| PstI | CTGCAG | 1 cut(s) | 727 |
| PstNI | CAGNNNCTG | 1 cut(s) | 419 |
| PvuII | CAGCTG | 1 cut(s) | 518 |
| RsaI | GTAC | 5 cut(s) | 399, 523, 531, 739, 1035 |
| RsaNI | GTAC | 5 cut(s) | 398, 522, 530, 738, 1034 |
| RseI | CAYNNNNRTG | 5 cut(s) | 138, 367, 650, 662, 1083 |
| SacI | GAGCTC | 1 cut(s) | 198 |
| SaqAI | TTAA | 4 cut(s) | 57, 1142, 1413, 1519 |
| SatI | GCNGC | 3 cut(s) | 374, 1278, 1467 |
| Sau3AI | GATC | 5 cut(s) | 130, 593, 604, 774, 1059 |
| Sau96I | GGNCC | 1 cut(s) | 903 |
| SchI | GAGTC | 8 cut(s) | 99, 239, 297, 316, 410, 818, 1104, 1196 |
| SduI | GDGCHC | 1 cut(s) | 198 |
| SfaNI | GCATC | 3 cut(s) | 130, 1418, 1478 |
| SfcI | CTRYAG | 2 cut(s) | 723, 996 |
| SfuI | TTCGAA | 1 cut(s) | 1234 |
| SinI | GGWCC | 1 cut(s) | 903 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 138, 367, 650, 662, 1083 |
| SmlI | CTYRAG | 2 cut(s) | 890, 1141 |
| SmoI | CTYRAG | 2 cut(s) | 890, 1141 |
| Sse9I | AATT | 7 cut(s) | 145, 175, 423, 759, 923, 1065, 1073 |
| SseBI | AGGCCT | 2 cut(s) | 1437, 1516 |
| SsiI | CCGC | 2 cut(s) | 203, 797 |
| SspMI | CTAG | 6 cut(s) | 117, 258, 449, 488, 1200, 1224 |
| SstI | GAGCTC | 1 cut(s) | 198 |
| StuI | AGGCCT | 2 cut(s) | 1437, 1516 |
| StyI | CCWWGG | 1 cut(s) | 335 |
| TaaI | ACNGT | 3 cut(s) | 346, 434, 580 |
| TaiI | ACGT | 3 cut(s) | 170, 786, 1346 |
| TaqI | TCGA | 6 cut(s) | 39, 233, 444, 1176, 1190, 1234 |
| TaqII | GACCGA | 1 cut(s) | 455 |
| TasI | AATT | 7 cut(s) | 145, 175, 423, 759, 923, 1065, 1073 |
| TatI | WGTACW | 2 cut(s) | 529, 737 |
| TfiI | GAWTC | 4 cut(s) | 25, 80, 282, 410 |
| Tru1I | TTAA | 4 cut(s) | 57, 1142, 1413, 1519 |
| Tru9I | TTAA | 4 cut(s) | 57, 1142, 1413, 1519 |
| TscAI | CASTG | 2 cut(s) | 1142, 1287 |
| TseFI | GTSAC | 6 cut(s) | 354, 875, 955, 1264, 1282, 1327 |
| TseI | GCWGC | 3 cut(s) | 373, 1277, 1466 |
| Tsp45I | GTSAC | 6 cut(s) | 354, 875, 955, 1264, 1282, 1327 |
| TspDTI | ATGAA | 6 cut(s) | 33, 38, 254, 559, 634, 854 |
| TspGWI | ACGGA | 1 cut(s) | 679 |
| TspRI | CASTG | 2 cut(s) | 1142, 1287 |
| Vha464I | CTTAAG | 1 cut(s) | 1141 |
| VpaK11BI | GGWCC | 1 cut(s) | 903 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1317 |
| XapI | RAATTY | 2 cut(s) | 423, 923 |
| XceI | RCATGY | 2 cut(s) | 528, 1216 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1224, 1362 |
| XspI | CTAG | 6 cut(s) | 117, 258, 449, 488, 1200, 1224 |