FvH4_5g09390

Cyclic phosphodiesterase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
5425259 .. 5428808
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09390.t1

Sequence Viewer

Length: 1950 bp
ATGAGGGAGGTTCACAAAGACATTGAAGATGTTGTGGAACAAATCCTATCAACTCTGCCTCCCAAATCTCTTATGCGATTCAAGTGTGTTTCTAAAAGGTGGTATGCTCTGATCACCGATCCCAGGTTTGTGGCTAAGCACTTCTCCATTTCCAAGCAAAACAATCGCTGTACTCCTTGCGTCCTTTTGAAACGTTTACTCCATGAAGACAACAATGGCGATCAGACTCAGAAGGTATTCTCATTGCTTAAATTTCGCAACAATGTTGATATTGATATTGATAATGATGGTGGCGATGATGAACATAGTTTTGTTTCGGGGGTAGAGGACATTGACATTCCTCCTTGTTTGAGTTTAAAGACTCAAGGCTCATCACTTCATATTGTTGGCCACTGTAATGGGATTGTCTGTCTAGTTGCAGCCCTTTCCGGTGAGGTGATTTTATGGAACCCAGCAATTCATGACTTTAAGCTTCTTCCCCTTCAACCATACCTTCCTGATTCTCCAGAAATAGTTGGATCGCCGTTGCCGGGTTGGCCTAAAGATGTTCCCATTAGTATACACCGTGATTACATGGATAATTTAGGATTTGGCTTTGATCCTAGGTCTAATGACTACAAAGTTGTTAACATTGGATTTCCTGGTGTAGAACATCCTGCTGATGGATATAATATTAATCTTCCTCCGAAAACAGCTATATACACCTTGAGTTCCAATTCTTGGAGAGAGATGAAGACCTTCTCTTTGGAAACACAATCCACTATCCTTCTTCCTGACCGCTTCCAAGTGTACTTCAAGGGAATGTGTTATTGGCTTGGACGTGAGCTGCACAAGGAAATACTTTTGTTTGATGCGATGACTGACGAGTTCATTAGGAACATTATCATTTTGTTTGATATGGCTGATGAGGTGTTTCATGATATGCTGTTACCGGATAGTCTATATGATCCTAATGTACTTTGTTTTAATATGCGCCTTCTAGTGTGGAATGAATCAGTTGCTCTTTTTGGAATGCGAAATGGTAATTCATTCTCCGGTTCTTCTTTTGGGATATGGGTGATGGATGATTTTGATGGTCCAAAGAGCCGTTGGACTAAACACATATCTTTCGATCTCATTGAAAAGCCATTGGCATTTTTGAAGAGCGATGAGATCCTTATGGCGGACACAAAGGACACAAAGGGACGCATATTCTCTTATAACCTCAGCACCAAAAGGCTCAAGTATCTTCCCATTGAAAGCATGCAAGATGATTCTGCGACTGTTGTCTATGACAATTACAGTATAGTTTCAATTTTGGGAGGCAACGAGCTGAAGAACACCGATCGTTATACCAATGCTGGCTCTTCTCTTTTGGAGCACTCTTCTTTTCCGTCAAGTATAATAGACAATGAATGGCATTCCTATTCGGTATGGGCGATACTGCCAGATGATGTGTGTCTCAAGGTAAGGAAGGTGATTCAGGGCCTTAGGTCGGAGTTTGGTGGTCCGGAGATTGAACCACATATTACCGTTGTAGGGTCTATTCGAATGACACACGCAGAGGTGCTTAATAAGTTTAGATCTCTTCAGTCTTGTGTTCCTTCCGGGTACAAAGCTATAGTTAACCGCTTGGTAATTAGGAGTTTCTATTACCAGTGTGTTTCGCTCCTCATTGATTCCTCATTTCAAAATGAACATGAGTCCAGTAAGTTATGGAGAGCAACTGGATTTTGCGGAAGTTGTTTTGGTTTCCAGAGCGGTGTTAGGCCACATTTGAGTCTTCTATATGGGAATCTGACAGAGGAAGAGAGGACAAGAGCTCAAGAAAAAGTTAGTATTCTGGATGAGAGCATTACTAGAATGAGCTTCCCCATAACTAAACTTGCACTGTACAAAATTGACTACAAAGATAAGAGTCTCAAATCGTGGGAGAAGATTGCTGAATACAATCTCCGATATCACAATTAG

Protein Analysis

650

Amino Acids

74.09

Weight (kDa)

5.84

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 43 1.7e-09 F-box domain
F-box-like PF12937 10 - 43 9.9e-07 F-box-like
FBA_1 PF07734 123 - 391 9.6e-19 F-box associated beta propeller domain
FBA_3 PF08268 124 - 424 4.4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1200
AccB7I CCANNNNNTGG 1 cut(s) 720
AccBSI CCGCTC 1 cut(s) 1740
AccI GTMKAC 1 cut(s) 559
AccIII TCCGGA 1 cut(s) 1489
AciI CCGC 5 cut(s) 778, 1163, 1609, 1716, 1740
AclI AACGTT 1 cut(s) 193
AclWI GGATC 5 cut(s) 113, 526, 593, 941, 1147
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 1334, 1553
AfaI GTAC 5 cut(s) 172, 791, 957, 1592, 1874
AfiI CCNNNNNNNGG 7 cut(s) 123, 530, 662, 720, 1162, 1474, 1518
AjiI CACGTC 1 cut(s) 821
AjnI CCWGG 2 cut(s) 122, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 793, 825
AluBI AGCT 7 cut(s) 472, 695, 826, 1312, 1598, 1802, 1848
AluI AGCT 7 cut(s) 472, 695, 826, 1312, 1598, 1802, 1848
Alw21I GWGCWC 2 cut(s) 1362, 1804
Alw26I GTCTC 2 cut(s) 1445, 1904
AlwI GGATC 5 cut(s) 113, 526, 593, 941, 1147
Aor13HI TCCGGA 1 cut(s) 1489
AoxI GGCC 4 cut(s) 388, 536, 1465, 1748
ApeKI GCWGC 2 cut(s) 419, 826
ApoI RAATTY 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 2 cut(s) 236, 737
AspA2I CCTAGG 1 cut(s) 602
AspLEI GCGC 1 cut(s) 975
AspS9I GGNCC 3 cut(s) 1076, 1465, 1487
AsuC2I CCSGG 2 cut(s) 531, 1588
AsuHPI GGTGA 5 cut(s) 106, 443, 448, 1069, 1468
AsuII TTCGAA 1 cut(s) 1528
AvaII GGWCC 2 cut(s) 1076, 1487
AvrII CCTAGG 1 cut(s) 602
AxyI CCTNAGG 1 cut(s) 1469
BalI TGGCCA 1 cut(s) 390
BanII GRGCYC 1 cut(s) 1804
BbsI GAAGAC 3 cut(s) 213, 740, 1754
Bbv12I GWGCWC 2 cut(s) 1362, 1804
BbvCI CCTCAGC 1 cut(s) 1205
BbvI GCAGC 2 cut(s) 431, 813
BccI CCATC 4 cut(s) 281, 656, 1054, 1067
BceAI ACGGC 2 cut(s) 508, 1071
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 2 cut(s) 124, 642
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 2 cut(s) 531, 1588
BcoDI GTCTC 2 cut(s) 1445, 1904
BfaI CTAG 4 cut(s) 413, 603, 980, 1839
BfmI CTRYAG 1 cut(s) 1599
BglI GCCNNNNNGGC 1 cut(s) 535
BglII AGATCT 1 cut(s) 1562
BisI GCNGC 2 cut(s) 420, 827
BlnI CCTAGG 1 cut(s) 602
BlpI GCTNAGC 1 cut(s) 135
BlsI GCNGC 2 cut(s) 421, 828
Bme1390I CCNGG 4 cut(s) 124, 531, 642, 1588
Bme18I GGWCC 2 cut(s) 1076, 1487
BmgBI CACGTC 1 cut(s) 821
BmgT120I GGNCC 3 cut(s) 1076, 1465, 1487
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 4 cut(s) 124, 531, 642, 1588
BmsI GCATC 1 cut(s) 841
BoxI GACNNNNGTC 1 cut(s) 1265
BpiI GAAGAC 3 cut(s) 213, 740, 1754
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 1205
Bpu1102I GCTNAGC 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 1528
BpuEI CTTGAG 5 cut(s) 348, 727, 1205, 1427, 1788
BpuMI CCSGG 2 cut(s) 531, 1588
BsaJI CCNNGG 2 cut(s) 122, 602
BsaWI WCCGGW 4 cut(s) 428, 931, 1034, 1489
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 183, 213
Bsc4I CCNNNNNNNGG 7 cut(s) 123, 530, 662, 720, 1162, 1474, 1518
Bse1I ACTGG 3 cut(s) 1636, 1686, 1711
Bse21I CCTNAGG 1 cut(s) 1469
Bse3DI GCAATG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 1489
BseBI CCWGG 2 cut(s) 124, 642
BseDI CCNNGG 2 cut(s) 122, 602
BseGI GGATG 3 cut(s) 652, 1069, 1831
BseLI CCNNNNNNNGG 7 cut(s) 123, 530, 662, 720, 1162, 1474, 1518
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 2 cut(s) 242, 1219
BseNI ACTGG 3 cut(s) 1636, 1686, 1711
BseRI GAGGAG 1 cut(s) 1640
BseXI GCAGC 2 cut(s) 431, 813
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 812
Bsh1285I CGRYCG 1 cut(s) 1327
BshFI GGCC 4 cut(s) 390, 538, 1467, 1750
BsiEI CGRYCG 1 cut(s) 1327
BsiHKAI GWGCWC 2 cut(s) 1362, 1804
BsiSI CCGG 6 cut(s) 429, 530, 932, 1035, 1490, 1587
BslFI GGGAC 1 cut(s) 1197
BslI CCNNNNNNNGG 7 cut(s) 123, 530, 662, 720, 1162, 1474, 1518
BsmAI GTCTC 2 cut(s) 1445, 1904
BsmFI GGGAC 1 cut(s) 1197
BsmI GAATGC 2 cut(s) 1017, 1399
BsnI GGCC 4 cut(s) 390, 538, 1467, 1750
Bsp119I TTCGAA 1 cut(s) 1528
Bsp1286I GDGCHC 2 cut(s) 1362, 1804
Bsp13I TCCGGA 1 cut(s) 1489
Bsp1407I TGTACA 1 cut(s) 1872
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 5 cut(s) 778, 1163, 1609, 1716, 1740
BspANI GGCC 4 cut(s) 390, 538, 1467, 1750
BspCNI CTCAG 2 cut(s) 241, 1218
BspEI TCCGGA 1 cut(s) 1489
BspHI TCATGA 2 cut(s) 460, 916
BspLI GGNNCC 1 cut(s) 449
BspPI GGATC 5 cut(s) 113, 526, 593, 941, 1147
BspQI GCTCTTC 2 cut(s) 1136, 1351
BspT104I TTCGAA 1 cut(s) 1528
BsrBI CCGCTC 1 cut(s) 1740
BsrDI GCAATG 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 1872
BsrI ACTGG 3 cut(s) 1636, 1686, 1711
BssECI CCNNGG 2 cut(s) 122, 602
BssNAI GTATAC 1 cut(s) 560
BssT1I CCWWGG 1 cut(s) 602
Bst1107I GTATAC 1 cut(s) 560
Bst2UI CCWGG 2 cut(s) 124, 642
Bst4CI ACNGT 6 cut(s) 395, 566, 1264, 1283, 1513, 1872
Bst6I CTCTTC 5 cut(s) 1136, 1351, 1369, 1572, 1782
BstAUI TGTACA 1 cut(s) 1872
BstBI TTCGAA 1 cut(s) 1528
BstC8I GCNNGC 2 cut(s) 1244, 1342
BstDEI CTNAG 4 cut(s) 135, 228, 1205, 1469
BstF5I GGATG 3 cut(s) 652, 1069, 1831
BstHHI GCGC 1 cut(s) 975
BstMAI GTCTC 2 cut(s) 1445, 1904
BstMCI CGRYCG 1 cut(s) 1327
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 2 cut(s) 124, 642
BstNSI RCATGY 1 cut(s) 1246
BstPAI GACNNNNGTC 1 cut(s) 1265
BstSCI CCNGG 4 cut(s) 122, 529, 640, 1586
BstSFI CTRYAG 1 cut(s) 1599
BstV1I GCAGC 2 cut(s) 431, 813
BstV2I GAAGAC 3 cut(s) 213, 740, 1754
BstX2I RGATCY 2 cut(s) 1152, 1562
BstXI CCANNNNNNTGG 2 cut(s) 130, 398
BstYI RGATCY 2 cut(s) 1152, 1562
BstZ17I GTATAC 1 cut(s) 560
Bsu36I CCTNAGG 1 cut(s) 1469
BsuRI GGCC 4 cut(s) 390, 538, 1467, 1750
BtgZI GCGATG 3 cut(s) 309, 869, 1161
BtrI CACGTC 1 cut(s) 821
BtsCI GGATG 3 cut(s) 652, 1069, 1831
BtsIMutI CAGTG 3 cut(s) 391, 1643, 1868
Cac8I GCNNGC 2 cut(s) 1244, 1342
CciI TCATGA 2 cut(s) 460, 916
CfoI GCGC 1 cut(s) 975
Cfr13I GGNCC 3 cut(s) 1076, 1465, 1487
CseI GACGC 2 cut(s) 169, 1194
Csp6I GTAC 5 cut(s) 171, 790, 956, 1591, 1873
CviAII CATG 6 cut(s) 203, 461, 574, 917, 1243, 1679
CviQI GTAC 5 cut(s) 171, 790, 956, 1591, 1873
DdeI CTNAG 4 cut(s) 135, 228, 1205, 1469
DraI TTTAAA 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 5 cut(s) 1136, 1351, 1369, 1572, 1782
EarI CTCTTC 5 cut(s) 1136, 1351, 1369, 1572, 1782
EciI GGCGGA 1 cut(s) 1178
Ecl136II GAGCTC 1 cut(s) 1802
Eco130I CCWWGG 1 cut(s) 602
Eco24I GRGCYC 1 cut(s) 1804
Eco32I GATATC 1 cut(s) 1940
Eco47I GGWCC 2 cut(s) 1076, 1487
Eco53kI GAGCTC 1 cut(s) 1802
Eco57I CTGAAG 2 cut(s) 1334, 1553
Eco81I CCTNAGG 1 cut(s) 1469
EcoICRI GAGCTC 1 cut(s) 1802
EcoO109I RGGNCCY 1 cut(s) 1465
EcoRII CCWGG 2 cut(s) 122, 640
EcoRV GATATC 1 cut(s) 1940
EcoT14I CCWWGG 1 cut(s) 602
EcoT38I GRGCYC 1 cut(s) 1804
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 6 cut(s) 206, 464, 577, 920, 1246, 1682
FaqI GGGAC 1 cut(s) 1197
FatI CATG 6 cut(s) 202, 460, 573, 916, 1242, 1678
FbaI TGATCA 1 cut(s) 111
FblI GTMKAC 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 420, 827
FokI GGATG 3 cut(s) 639, 1076, 1838
FriOI GRGCYC 1 cut(s) 1804
Fsp4HI GCNGC 2 cut(s) 420, 827
FspBI CTAG 4 cut(s) 413, 603, 980, 1839
GlaI GCGC 1 cut(s) 974
GluI GCNGC 2 cut(s) 420, 827
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 4 cut(s) 390, 538, 1467, 1750
HapII CCGG 6 cut(s) 429, 530, 932, 1035, 1490, 1587
HgaI GACGC 2 cut(s) 169, 1194
HhaI GCGC 1 cut(s) 975
Hin1II CATG 6 cut(s) 206, 464, 577, 920, 1246, 1682
Hin6I GCGC 1 cut(s) 973
HinP1I GCGC 1 cut(s) 973
HincII GTYRAC 2 cut(s) 628, 1606
HindII GTYRAC 2 cut(s) 628, 1606
HindIII AAGCTT 1 cut(s) 470
HpaI GTTAAC 2 cut(s) 628, 1606
HpaII CCGG 6 cut(s) 429, 530, 932, 1035, 1490, 1587
HphI GGTGA 5 cut(s) 106, 443, 448, 1069, 1468
Hpy166II GTNNAC 6 cut(s) 13, 197, 560, 628, 790, 1606
Hpy188I TCNGA 7 cut(s) 111, 225, 231, 687, 1477, 1779, 1937
Hpy188III TCNNGA 9 cut(s) 461, 497, 506, 773, 917, 1490, 1735, 1805, 1823
Hpy8I GTNNAC 6 cut(s) 13, 197, 560, 628, 790, 1606
HpyAV CCTTC 8 cut(s) 226, 491, 503, 748, 776, 986, 1447, 1593
HpyCH4III ACNGT 6 cut(s) 395, 566, 1264, 1283, 1513, 1872
HpyCH4IV ACGT 2 cut(s) 193, 820
HpyCH4V TGCA 4 cut(s) 419, 829, 1246, 1868
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 4 cut(s) 135, 228, 1205, 1469
HpySE526I ACGT 2 cut(s) 193, 820
Hsp92II CATG 6 cut(s) 206, 464, 577, 920, 1246, 1682
HspAI GCGC 1 cut(s) 973
Kpn2I TCCGGA 1 cut(s) 1489
Ksp22I TGATCA 1 cut(s) 111
KspAI GTTAAC 2 cut(s) 628, 1606
LguI GCTCTTC 2 cut(s) 1136, 1351
LmnI GCTCC 2 cut(s) 1357, 1653
Lsp1109I GCAGC 2 cut(s) 431, 813
LweI GCATC 1 cut(s) 841
MaeI CTAG 4 cut(s) 413, 603, 980, 1839
MaeII ACGT 2 cut(s) 193, 820
MaeIII GTNAC 1 cut(s) 927
MbiI CCGCTC 1 cut(s) 1740
MflI RGATCY 2 cut(s) 1152, 1562
MhlI GDGCHC 2 cut(s) 1362, 1804
MlsI TGGCCA 1 cut(s) 390
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 5 cut(s) 220, 355, 1691, 1768, 1906
MmeI TCCRAC 3 cut(s) 496, 1070, 1455
Mox20I TGGCCA 1 cut(s) 390
MroI TCCGGA 1 cut(s) 1489
MroXI GAANNNNTTC 2 cut(s) 236, 737
MscI TGGCCA 1 cut(s) 390
MseI TTAA 8 cut(s) 249, 356, 468, 627, 675, 966, 1551, 1605
MslI CAYNNNNRTG 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 390
MspI CCGG 6 cut(s) 429, 530, 932, 1035, 1490, 1587
MspR9I CCNGG 4 cut(s) 124, 531, 642, 1588
Mva1269I GAATGC 2 cut(s) 1017, 1399
MvaI CCWGG 2 cut(s) 124, 642
MwoI GCNNNNNNNGC 1 cut(s) 535
NciI CCSGG 2 cut(s) 531, 1588
NlaIII CATG 6 cut(s) 206, 464, 577, 920, 1246, 1682
NlaIV GGNNCC 1 cut(s) 449
NspI RCATGY 1 cut(s) 1246
NspV TTCGAA 1 cut(s) 1528
PaeI GCATGC 1 cut(s) 1246
PagI TCATGA 2 cut(s) 460, 916
PciSI GCTCTTC 2 cut(s) 1136, 1351
PcsI WCGNNNNNNNCGW 1 cut(s) 1415
PctI GAATGC 2 cut(s) 1017, 1399
PdmI GAANNNNTTC 2 cut(s) 236, 737
PfeI GAWTC 7 cut(s) 78, 500, 992, 1253, 1459, 1658, 1774
PflMI CCANNNNNTGG 1 cut(s) 720
PkrI GCNGC 2 cut(s) 421, 828
Ple19I CGATCG 1 cut(s) 1327
PleI GAGTC 5 cut(s) 220, 355, 1690, 1767, 1905
PpsI GAGTC 5 cut(s) 220, 355, 1690, 1767, 1905
PshAI GACNNNNGTC 1 cut(s) 1265
PshBI ATTAAT 1 cut(s) 675
PsiI TTATAA 1 cut(s) 1200
Psp124BI GAGCTC 1 cut(s) 1804
Psp1406I AACGTT 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 122, 640
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 2 cut(s) 122, 640
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 3 cut(s) 1076, 1465, 1487
PsuI RGATCY 2 cut(s) 1152, 1562
PvuI CGATCG 1 cut(s) 1327
RsaI GTAC 5 cut(s) 172, 791, 957, 1592, 1874
RsaNI GTAC 5 cut(s) 171, 790, 956, 1591, 1873
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 1804
SapI GCTCTTC 2 cut(s) 1136, 1351
SaqAI TTAA 8 cut(s) 249, 356, 468, 627, 675, 966, 1551, 1605
SatI GCNGC 2 cut(s) 420, 827
Sau96I GGNCC 3 cut(s) 1076, 1465, 1487
SchI GAGTC 5 cut(s) 220, 355, 1691, 1768, 1906
ScrFI CCNGG 4 cut(s) 124, 531, 642, 1588
SduI GDGCHC 2 cut(s) 1362, 1804
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 1 cut(s) 1599
SfuI TTCGAA 1 cut(s) 1528
SinI GGWCC 2 cut(s) 1076, 1487
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 5 cut(s) 363, 706, 1220, 1442, 1803
SmoI CTYRAG 5 cut(s) 363, 706, 1220, 1442, 1803
SphI GCATGC 1 cut(s) 1246
SsiI CCGC 5 cut(s) 778, 1163, 1609, 1716, 1740
SspI AATATT 1 cut(s) 673
SspMI CTAG 4 cut(s) 413, 603, 980, 1839
SstI GAGCTC 1 cut(s) 1804
StyD4I CCNGG 4 cut(s) 122, 529, 640, 1586
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 6 cut(s) 395, 566, 1264, 1283, 1513, 1872
TaiI ACGT 2 cut(s) 196, 823
TaqI TCGA 2 cut(s) 1110, 1528
TatI WGTACW 4 cut(s) 170, 789, 955, 1872
TfiI GAWTC 7 cut(s) 78, 500, 992, 1253, 1459, 1658, 1774
Tru1I TTAA 8 cut(s) 249, 356, 468, 627, 675, 966, 1551, 1605
Tru9I TTAA 8 cut(s) 249, 356, 468, 627, 675, 966, 1551, 1605
TscAI CASTG 3 cut(s) 398, 1643, 1875
TseI GCWGC 2 cut(s) 419, 826
TspGWI ACGGA 1 cut(s) 1362
TspRI CASTG 3 cut(s) 398, 1643, 1875
Van91I CCANNNNNTGG 1 cut(s) 720
VpaK11BI GGWCC 2 cut(s) 1076, 1487
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 1246
XcmI CCANNNNNNNNNTGG 1 cut(s) 1086
XmaJI CCTAGG 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 559
XmnI GAANNNNTTC 2 cut(s) 236, 737
XspI CTAG 4 cut(s) 413, 603, 980, 1839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.