Rorug03G0011000

RING-like zinc finger

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
835316 .. 842912
7597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0011000.1

Sequence Viewer

Length: 1860 bp
ATGCAATCCCTCACCTCGGGAATCCCCCCCACTCCCAAATCCATGGCCACCGAGCCTCCCGCCGACCACCGCCGTGCCGATTCCGGCAGCTCCGACACTTCCGTCTATTACGACGCAAACCTCGACGCTAGTGACGCCAATGGCAGCAGCAGCTCCTCTTCAGGGTTTACAGAAAGGCATGTGCCAGTAGAAGCCTCCAGAGAATTGTCGAATGCCGGAAACGGTTCCGGAAACTATACCGGAACCTCATCGGGTTCGAGTTCCGGTCAGCTTGATACAGGCCCGAAATTGAATCAGAGTCAGTCATTAGCTCTATATCTAACCAGACTTTTCGACGAAAAAATCCCTTTCAGAAAAAAGCTTAAGCATATAAAACGAGTGGCAACAGTTACGGATAACGGGACTGTGCAATTCGACGTTCCGGGAGATGTTAAACCGCATTTACTGGATTTCGGAACCGGAGTTGTTTATGATGAAGAGAGTTCCGGTGCATCGGAAAATGTGCCTGATATACCTCCACTGCAAATTGTAATGCTGATTGTTGGTACGCGAGGAGATGTTCAGCCATTTGTTGCTATTGGAAAGAAATTACAGGAATATGGCCATAGGGTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACTGCTGGGTTGGAGTTCTTTCCTTTAGGTGGAGATCCGAAAGTTCTTGCCGAATATATGGTCAAGAATAAAGGTTTCTTGCCATCGGGACCTTCGGAAGTATCTATTCAGCGACAGCAAATGAAAGAAATAATATTTTCTTTACTTCCTGCGTGCAAGGAACCTGATCCTGATTCCAAAGTCCCGTTTAAAGCAGATGCAATAATTGCCAACCCACCAGCATATGGGCACTCTCATGTTGCTGAGGCACTAAAAATACCGATTCATATATTCTTCACAATGCCATGGACGCCTACCAGTGAATTCCCTCATCCTCTATCCCGTGTCAAGCAACATATTGGATATAGACTATCATATCAAATAGTCGATGCATTAATTTGGCTAGGAATTCGAGACATGATAAATGATTTTAGGAAGAAAATGCTGAAGCTGAGACGTACCACATATTTAAGTGGATACTATAGTACTCCTCCTGACGTTCCCTATGGGTATATATGGAGTCCTCATCTTGTTCCCAAACCTAAAGATTGGGGTCCTAAGATTGATGTCGTTGGGTTTTGTTTTCTTGACCTTGCTTCAAATTATGAACCTCCTGATTCACTTGTGAAGTGGCTTGGAGCTGGTGAACAGCCTGTCTATGTTGGATTTGGTAGCCTTCCTCTTCAAGAACCAGAGAAGATGACCAATATTATTCTTCAAGCTCTGGAAATTACTGGACAGAGAGGCATTATCAACAAAGGCTGGGGTGGCCTTGGTAATTCGGTAGAACCAAATGATTCTGTGTACTTAGTGGACAATTGCCCCCATGATTGGCTCTTCCTACGATGCTCTGCCGTGGTACATCATGGAGGTGCTGGGACAACTGCTGCTGGTTTGAAAGCTGCGTGTCCAACTACAATTGTGCCATTCTTTGGAGACCAGCCATTTTGGGGTGAGAGGGTGCATGCCAGAGGAGTAGGTCCTGCACCAATCCCAGTTGATGAGTTCTCACTTGAAAAATTGGTTGATGCCATACGGTTCATGTTAGATCCAAAGGTTAAAGAGCGTGCTGTTGAAATTGCCAAAGCAATGGAGAATGAAGATGGGGTCGCCGGAGCAGTGAAGGCCTTTCATAAGCACTTTCCTCGCAATAAAGCTCAATATGAGTCATTGCCGGCTCGAAAAGGGCATTTTTCTATCAGGCGGTGTTTTGGCTACTCCTATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

619

Amino Acids

67.91

Weight (kDa)

7.04

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_28 PF03033 176 - 319 2.8e-31 Glycosyltransferase family 28 N-terminal domain
EryCIII-like_C PF06722 476 - 575 1.1e-12 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccB7I CCANNNNNTGG 2 cut(s) 875, 1562
AccII CGCG 1 cut(s) 550
AccIII TCCGGA 1 cut(s) 227
AciI CCGC 4 cut(s) 60, 70, 437, 1834
AclWI GGATC 3 cut(s) 680, 812, 1673
AcoI YGGCCR 2 cut(s) 45, 601
AcsI RAATTY 3 cut(s) 631, 953, 1038
AcuI CTGAAG 2 cut(s) 144, 1097
AcyI GRCGYC 2 cut(s) 135, 941
AfaI GTAC 5 cut(s) 547, 1090, 1117, 1436, 1491
AfiI CCNNNNNNNGG 7 cut(s) 16, 162, 680, 875, 1461, 1562, 1580
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 8 cut(s) 292, 637, 1230, 1316, 1349, 1528, 1646, 1706
AleI CACNNNNGTG 1 cut(s) 72
Alw26I GTCTC 3 cut(s) 1038, 1078, 1560
AlwI GGATC 3 cut(s) 680, 812, 1673
Ama87I CYCGRG 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 5 cut(s) 45, 280, 601, 1399, 1755
ApeKI GCWGC 6 cut(s) 87, 144, 147, 150, 1517, 1532
ApoI RAATTY 3 cut(s) 631, 953, 1038
ArsI GACNNNNNNTTYG 4 cut(s) 630, 662, 696, 728
AseI ATTAAT 1 cut(s) 1025
Asp700I GAANNNNTTC 1 cut(s) 223
AspS9I GGNCC 4 cut(s) 281, 740, 1184, 1610
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 3 cut(s) 4, 1286, 1595
AsuNHI GCTAGC 1 cut(s) 616
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 3 cut(s) 740, 1184, 1610
BaeGI GKGCMC 1 cut(s) 882
BaeI ACNNNNGTAYC 2 cut(s) 1099, 1132
BalI TGGCCA 2 cut(s) 47, 603
BbvCI CCTCAGC 1 cut(s) 894
BbvI GCAGC 6 cut(s) 99, 156, 159, 162, 1504, 1519
BccI CCATC 2 cut(s) 742, 1727
BceAI ACGGC 2 cut(s) 57, 1469
BcgI CGANNNNNNTGC 2 cut(s) 1757, 1791
BciVI GTATCC 1 cut(s) 1100
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 3 cut(s) 1038, 1078, 1560
BfaI CTAG 3 cut(s) 129, 617, 1034
BfmI CTRYAG 1 cut(s) 1111
BfrI CTTAAG 1 cut(s) 362
BfuI GTATCC 1 cut(s) 1100
BisI GCNGC 6 cut(s) 88, 145, 148, 151, 1518, 1533
BlsI GCNGC 6 cut(s) 89, 146, 149, 152, 1519, 1534
BmcAI AGTACT 1 cut(s) 1117
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 3 cut(s) 740, 1184, 1610
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 4 cut(s) 281, 740, 1184, 1610
BmiI GGNNCC 6 cut(s) 226, 244, 457, 741, 813, 1185
BmrFI CCNGG 1 cut(s) 423
BmrI ACTGGG 1 cut(s) 1619
BmsI GCATC 5 cut(s) 500, 838, 1009, 1466, 1648
BmtI GCTAGC 1 cut(s) 620
BmuI ACTGGG 1 cut(s) 1619
BpmI CTGGAG 1 cut(s) 181
Bpu10I CCTNAGC 1 cut(s) 894
BpuMI CCSGG 1 cut(s) 423
BsaHI GRCGYC 2 cut(s) 135, 941
BsaI GGTCTC 1 cut(s) 1560
BsaJI CCNNGG 5 cut(s) 15, 42, 935, 1402, 1485
BsaWI WCCGGW 5 cut(s) 227, 239, 263, 458, 485
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 7 cut(s) 16, 162, 680, 875, 1461, 1562, 1580
Bse118I RCCGGY 1 cut(s) 1804
Bse1I ACTGG 5 cut(s) 185, 450, 948, 1369, 1625
Bse3DI GCAATG 2 cut(s) 1725, 1799
BseAI TCCGGA 1 cut(s) 227
BseDI CCNNGG 5 cut(s) 15, 42, 935, 1402, 1485
BseGI GGATG 1 cut(s) 961
BseLI CCNNNNNNNGG 7 cut(s) 16, 162, 680, 875, 1461, 1562, 1580
BseMI GCAATG 2 cut(s) 1725, 1799
BseMII CTCAG 2 cut(s) 885, 1073
BseNI ACTGG 5 cut(s) 185, 450, 948, 1369, 1625
BseRI GAGGAG 4 cut(s) 145, 567, 1110, 1617
BseSI GKGCMC 1 cut(s) 882
BseXI GCAGC 6 cut(s) 99, 156, 159, 162, 1504, 1519
BseYI CCCAGC 3 cut(s) 656, 1392, 1505
BsgI GTGCAG 1 cut(s) 1599
Bsh1236I CGCG 1 cut(s) 550
BshFI GGCC 5 cut(s) 47, 282, 603, 1401, 1757
BsiHKCI CYCGRG 1 cut(s) 16
BslFI GGGAC 4 cut(s) 415, 753, 818, 1522
BslI CCNNNNNNNGG 7 cut(s) 16, 162, 680, 875, 1461, 1562, 1580
BsmAI GTCTC 3 cut(s) 1038, 1078, 1560
BsmBI CGTCTC 1 cut(s) 1078
BsmFI GGGAC 4 cut(s) 415, 753, 818, 1522
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 5 cut(s) 47, 282, 603, 1401, 1757
Bso31I GGTCTC 1 cut(s) 1560
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 882
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 3 cut(s) 685, 817, 1678
Bsp19I CCATGG 2 cut(s) 42, 935
BspACI CCGC 4 cut(s) 60, 70, 437, 1834
BspANI GGCC 5 cut(s) 47, 282, 603, 1401, 1757
BspCNI CTCAG 2 cut(s) 886, 1074
BspEI TCCGGA 1 cut(s) 227
BspFNI CGCG 1 cut(s) 550
BspHI TCATGA 1 cut(s) 1856
BspLI GGNNCC 6 cut(s) 226, 244, 457, 741, 813, 1185
BspOI GCTAGC 1 cut(s) 620
BspPI GGATC 3 cut(s) 680, 812, 1673
BspQI GCTCTTC 1 cut(s) 1472
BspTI CTTAAG 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 1560
BsrDI GCAATG 2 cut(s) 1725, 1799
BsrFI RCCGGY 1 cut(s) 1804
BsrI ACTGG 5 cut(s) 185, 450, 948, 1369, 1625
BssAI RCCGGY 1 cut(s) 1804
BssECI CCNNGG 5 cut(s) 15, 42, 935, 1402, 1485
BssMI GATC 3 cut(s) 685, 817, 1678
BssNI GRCGYC 2 cut(s) 135, 941
BssT1I CCWWGG 3 cut(s) 42, 935, 1402
Bst4CI ACNGT 4 cut(s) 224, 388, 406, 1668
Bst6I CTCTTC 4 cut(s) 163, 471, 1317, 1472
BstACI GRCGYC 2 cut(s) 135, 941
BstAFI CTTAAG 1 cut(s) 362
BstAPI GCANNNNNTGC 2 cut(s) 626, 857
BstC8I GCNNGC 5 cut(s) 618, 805, 1596, 1698, 1806
BstDEI CTNAG 4 cut(s) 894, 1082, 1188, 1438
BstDSI CCRYGG 3 cut(s) 42, 935, 1485
BstF5I GGATG 1 cut(s) 961
BstFNI CGCG 1 cut(s) 550
BstKTI GATC 3 cut(s) 688, 820, 1681
BstMAI GTCTC 3 cut(s) 1038, 1078, 1560
BstMBI GATC 3 cut(s) 685, 817, 1678
BstMWI GCNNNNNNNGC 7 cut(s) 134, 150, 626, 857, 940, 1398, 1754
BstNSI RCATGY 2 cut(s) 182, 1598
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 1111
BstSLI GKGCMC 1 cut(s) 882
BstUI CGCG 1 cut(s) 550
BstV1I GCAGC 6 cut(s) 99, 156, 159, 162, 1504, 1519
BstX2I RGATCY 2 cut(s) 685, 1678
BstXI CCANNNNNNTGG 2 cut(s) 43, 1720
BstYI RGATCY 2 cut(s) 685, 1678
BsuI GTATCC 1 cut(s) 1100
BsuRI GGCC 5 cut(s) 47, 282, 603, 1401, 1757
BtgI CCRYGG 3 cut(s) 42, 935, 1485
BtsCI GGATG 1 cut(s) 961
BtsI GCAGTG 2 cut(s) 518, 1755
BtsIMutI CAGTG 3 cut(s) 518, 955, 1755
Cac8I GCNNGC 5 cut(s) 618, 805, 1596, 1698, 1806
CciI TCATGA 1 cut(s) 1856
Cfr10I RCCGGY 1 cut(s) 1804
Cfr13I GGNCC 4 cut(s) 281, 740, 1184, 1610
CseI GACGC 4 cut(s) 122, 134, 143, 949
Csp6I GTAC 5 cut(s) 546, 1089, 1116, 1435, 1490
CviQI GTAC 5 cut(s) 546, 1089, 1116, 1435, 1490
DdeI CTNAG 4 cut(s) 894, 1082, 1188, 1438
DpnI GATC 3 cut(s) 687, 819, 1680
DpnII GATC 3 cut(s) 685, 817, 1678
DraI TTTAAA 1 cut(s) 841
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 45, 601
Eam1104I CTCTTC 4 cut(s) 163, 471, 1317, 1472
EarI CTCTTC 4 cut(s) 163, 471, 1317, 1472
Eco130I CCWWGG 3 cut(s) 42, 935, 1402
Eco147I AGGCCT 1 cut(s) 1757
Eco31I GGTCTC 1 cut(s) 1560
Eco47I GGWCC 3 cut(s) 740, 1184, 1610
Eco57I CTGAAG 2 cut(s) 144, 1097
Eco88I CYCGRG 1 cut(s) 16
EcoO109I RGGNCCY 3 cut(s) 740, 1184, 1610
EcoRI GAATTC 2 cut(s) 953, 1038
EcoT14I CCWWGG 3 cut(s) 42, 935, 1402
EcoT22I ATGCAT 1 cut(s) 1024
ErhI CCWWGG 3 cut(s) 42, 935, 1402
Esp3I CGTCTC 1 cut(s) 1078
FaqI GGGAC 4 cut(s) 415, 753, 818, 1522
FauI CCCGC 1 cut(s) 67
FauNDI CATATG 1 cut(s) 874
Fnu4HI GCNGC 6 cut(s) 88, 145, 148, 151, 1518, 1533
FokI GGATG 1 cut(s) 948
Fsp4HI GCNGC 6 cut(s) 88, 145, 148, 151, 1518, 1533
FspBI CTAG 3 cut(s) 129, 617, 1034
GluI GCNGC 6 cut(s) 88, 145, 148, 151, 1518, 1533
GsaI CCCAGC 3 cut(s) 660, 1396, 1509
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 5 cut(s) 47, 282, 603, 1401, 1757
HgaI GACGC 4 cut(s) 122, 134, 143, 949
Hin1I GRCGYC 2 cut(s) 135, 941
HindIII AAGCTT 1 cut(s) 359
HphI GGTGA 3 cut(s) 4, 1286, 1595
Hpy166II GTNNAC 4 cut(s) 168, 1277, 1435, 1444
Hpy188I TCNGA 7 cut(s) 94, 297, 353, 455, 496, 690, 748
Hpy8I GTNNAC 4 cut(s) 168, 1277, 1435, 1444
Hpy99I CGWCG 4 cut(s) 116, 128, 338, 419
HpyAV CCTTC 3 cut(s) 753, 1316, 1747
HpyCH4III ACNGT 4 cut(s) 224, 388, 406, 1668
HpyCH4IV ACGT 3 cut(s) 417, 1087, 1128
HpyF10VI GCNNNNNNNGC 7 cut(s) 134, 150, 626, 857, 940, 1398, 1754
HpyF3I CTNAG 4 cut(s) 894, 1082, 1188, 1438
HpySE526I ACGT 3 cut(s) 417, 1087, 1128
Hsp92I GRCGYC 2 cut(s) 135, 941
Kpn2I TCCGGA 1 cut(s) 227
KroI GCCGGC 1 cut(s) 1804
KroNI GCCGGC 1 cut(s) 1806
Kzo9I GATC 3 cut(s) 685, 817, 1678
LguI GCTCTTC 1 cut(s) 1472
LmnI GCTCC 4 cut(s) 95, 158, 1268, 1745
Lsp1109I GCAGC 6 cut(s) 99, 156, 159, 162, 1504, 1519
LweI GCATC 5 cut(s) 500, 838, 1009, 1466, 1648
MaeI CTAG 3 cut(s) 129, 617, 1034
MaeII ACGT 3 cut(s) 417, 1087, 1128
MaeIII GTNAC 2 cut(s) 131, 388
MalI GATC 3 cut(s) 687, 819, 1680
MboI GATC 3 cut(s) 685, 817, 1678
MboII GAAGA 9 cut(s) 150, 488, 916, 1078, 1304, 1337, 1339, 1459, 1742
MfeI CAATTG 2 cut(s) 1447, 1548
MflI RGATCY 2 cut(s) 685, 1678
MhlI GDGCHC 1 cut(s) 882
MlsI TGGCCA 2 cut(s) 47, 603
MluNI TGGCCA 2 cut(s) 47, 603
MlyI GAGTC 3 cut(s) 307, 1159, 1805
MmeI TCCRAC 4 cut(s) 117, 642, 1273, 1565
Mox20I TGGCCA 2 cut(s) 47, 603
Mph1103I ATGCAT 1 cut(s) 1024
MroI TCCGGA 1 cut(s) 227
MroNI GCCGGC 1 cut(s) 1804
MroXI GAANNNNTTC 1 cut(s) 223
MscI TGGCCA 2 cut(s) 47, 603
MseI TTAA 6 cut(s) 363, 432, 840, 1025, 1100, 1689
MslI CAYNNNNRTG 3 cut(s) 72, 885, 1500
Msp20I TGGCCA 2 cut(s) 47, 603
MspCI CTTAAG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 2 cut(s) 1447, 1548
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 1 cut(s) 550
MwoI GCNNNNNNNGC 7 cut(s) 134, 150, 626, 857, 940, 1398, 1754
NaeI GCCGGC 1 cut(s) 1806
NciI CCSGG 1 cut(s) 423
NcoI CCATGG 2 cut(s) 42, 935
NdeI CATATG 1 cut(s) 874
NdeII GATC 3 cut(s) 685, 817, 1678
NgoMIV GCCGGC 1 cut(s) 1804
NheI GCTAGC 1 cut(s) 616
NlaIV GGNNCC 6 cut(s) 226, 244, 457, 741, 813, 1185
NmuCI GTSAC 1 cut(s) 131
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 2 cut(s) 182, 1598
OliI CACNNNNGTG 1 cut(s) 72
PaeI GCATGC 1 cut(s) 1598
PagI TCATGA 1 cut(s) 1856
PceI AGGCCT 1 cut(s) 1757
PciSI GCTCTTC 1 cut(s) 1472
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 1806
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 7 cut(s) 21, 80, 292, 824, 913, 1247, 1427
PflMI CCANNNNNTGG 2 cut(s) 875, 1562
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 6 cut(s) 89, 146, 149, 152, 1519, 1534
PleI GAGTC 3 cut(s) 306, 1158, 1804
PpsI GAGTC 3 cut(s) 306, 1158, 1804
PpuMI RGGWCCY 3 cut(s) 740, 1184, 1610
PshBI ATTAAT 1 cut(s) 1025
Psp5II RGGWCCY 3 cut(s) 740, 1184, 1610
PspFI CCCAGC 3 cut(s) 656, 1392, 1505
PspN4I GGNNCC 6 cut(s) 226, 244, 457, 741, 813, 1185
PspPI GGNCC 4 cut(s) 281, 740, 1184, 1610
PspPPI RGGWCCY 3 cut(s) 740, 1184, 1610
PsuI RGATCY 2 cut(s) 685, 1678
RsaI GTAC 5 cut(s) 547, 1090, 1117, 1436, 1491
RsaNI GTAC 5 cut(s) 546, 1089, 1116, 1435, 1490
RseI CAYNNNNRTG 3 cut(s) 72, 885, 1500
SapI GCTCTTC 1 cut(s) 1472
SaqAI TTAA 6 cut(s) 363, 432, 840, 1025, 1100, 1689
SatI GCNGC 6 cut(s) 88, 145, 148, 151, 1518, 1533
Sau3AI GATC 3 cut(s) 685, 817, 1678
Sau96I GGNCC 4 cut(s) 281, 740, 1184, 1610
ScaI AGTACT 1 cut(s) 1117
SchI GAGTC 3 cut(s) 307, 1159, 1805
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 882
SfaNI GCATC 5 cut(s) 500, 838, 1009, 1466, 1648
SfcI CTRYAG 1 cut(s) 1111
SinI GGWCC 3 cut(s) 740, 1184, 1610
SmiMI CAYNNNNRTG 3 cut(s) 72, 885, 1500
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 1598
SseBI AGGCCT 1 cut(s) 1757
SsiI CCGC 4 cut(s) 60, 70, 437, 1834
SspI AATATT 2 cut(s) 786, 1339
SspMI CTAG 3 cut(s) 129, 617, 1034
StuI AGGCCT 1 cut(s) 1757
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 3 cut(s) 42, 935, 1402
TaaI ACNGT 4 cut(s) 224, 388, 406, 1668
TaiI ACGT 3 cut(s) 420, 1090, 1131
TaqI TCGA 8 cut(s) 123, 209, 257, 333, 414, 1017, 1042, 1810
TatI WGTACW 2 cut(s) 1115, 1434
TfiI GAWTC 7 cut(s) 21, 80, 292, 824, 913, 1247, 1427
Tru1I TTAA 6 cut(s) 363, 432, 840, 1025, 1100, 1689
Tru9I TTAA 6 cut(s) 363, 432, 840, 1025, 1100, 1689
TscAI CASTG 3 cut(s) 525, 955, 1755
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 6 cut(s) 87, 144, 147, 150, 1517, 1532
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 8 cut(s) 489, 788, 905, 1251, 1660, 1743, 1751, 1845
TspGWI ACGGA 2 cut(s) 91, 407
TspRI CASTG 3 cut(s) 525, 955, 1755
Van91I CCANNNNNTGG 2 cut(s) 875, 1562
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 3 cut(s) 740, 1184, 1610
VspI ATTAAT 1 cut(s) 1025
XapI RAATTY 3 cut(s) 631, 953, 1038
XceI RCATGY 2 cut(s) 182, 1598
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 3 cut(s) 129, 617, 1034
ZrmI AGTACT 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.