Cyclic phosphodiesterase-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 95 |
| AccI | GTMKAC | 3 cut(s) | 699, 928, 1383 |
| AccII | CGCG | 2 cut(s) | 143, 181 |
| AciI | CCGC | 4 cut(s) | 93, 141, 196, 664 |
| AclI | AACGTT | 1 cut(s) | 1693 |
| AclWI | GGATC | 4 cut(s) | 593, 1530, 1543, 1674 |
| AcsI | RAATTY | 1 cut(s) | 485 |
| AcuI | CTGAAG | 1 cut(s) | 279 |
| AfaI | GTAC | 3 cut(s) | 617, 1228, 1415 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 479, 480, 1027, 1531, 1532, 1695 |
| AflII | CTTAAG | 1 cut(s) | 1238 |
| AflIII | ACRYGT | 1 cut(s) | 1204 |
| AgsI | TTSAA | 8 cut(s) | 70, 377, 490, 647, 796, 982, 1256, 1682 |
| AjiI | CACGTC | 1 cut(s) | 169 |
| AjnI | CCWGG | 2 cut(s) | 345, 1485 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 387, 419, 793, 825 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1506, 1538 |
| Alw21I | GWGCWC | 1 cut(s) | 948 |
| Alw26I | GTCTC | 2 cut(s) | 82, 248 |
| AlwI | GGATC | 4 cut(s) | 593, 1530, 1543, 1674 |
| AoxI | GGCC | 6 cut(s) | 415, 524, 770, 1431, 1480, 1502 |
| ApeKI | GCWGC | 5 cut(s) | 193, 199, 327, 1317, 1401 |
| ApoI | RAATTY | 1 cut(s) | 485 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 840 |
| AspLEI | GCGC | 1 cut(s) | 181 |
| AspS9I | GGNCC | 9 cut(s) | 90, 220, 525, 532, 1030, 1431, 1480, 1502, 1893 |
| AsuC2I | CCSGG | 2 cut(s) | 111, 474 |
| AsuHPI | GGTGA | 5 cut(s) | 148, 962, 1078, 1387, 1483 |
| AvaII | GGWCC | 5 cut(s) | 90, 220, 532, 1030, 1893 |
| BaeGI | GKGCMC | 1 cut(s) | 1121 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1124, 1157 |
| BamHI | GGATCC | 1 cut(s) | 1535 |
| BanII | GRGCYC | 1 cut(s) | 948 |
| BbsI | GAAGAC | 1 cut(s) | 666 |
| Bbv12I | GWGCWC | 1 cut(s) | 948 |
| BbvI | GCAGC | 5 cut(s) | 205, 211, 314, 1329, 1388 |
| BceAI | ACGGC | 1 cut(s) | 894 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 412, 446 |
| BciT130I | CCWGG | 2 cut(s) | 347, 1487 |
| BciVI | GTATCC | 1 cut(s) | 1187 |
| BclI | TGATCA | 2 cut(s) | 888, 1126 |
| BcnI | CCSGG | 2 cut(s) | 111, 474 |
| BcoDI | GTCTC | 2 cut(s) | 82, 248 |
| BfaI | CTAG | 4 cut(s) | 444, 458, 1143, 1821 |
| BfrI | CTTAAG | 1 cut(s) | 1238 |
| BfuI | GTATCC | 1 cut(s) | 1187 |
| BglII | AGATCT | 1 cut(s) | 1877 |
| BisI | GCNGC | 6 cut(s) | 194, 197, 200, 328, 1318, 1402 |
| BlsI | GCNGC | 6 cut(s) | 195, 198, 201, 329, 1319, 1403 |
| Bme1390I | CCNGG | 4 cut(s) | 111, 347, 474, 1487 |
| Bme18I | GGWCC | 5 cut(s) | 90, 220, 532, 1030, 1893 |
| BmgBI | CACGTC | 1 cut(s) | 169 |
| BmgT120I | GGNCC | 9 cut(s) | 90, 220, 525, 532, 1030, 1431, 1480, 1502, 1893 |
| BmiI | GGNNCC | 2 cut(s) | 222, 1537 |
| BmrFI | CCNGG | 4 cut(s) | 111, 347, 474, 1487 |
| BmsI | GCATC | 5 cut(s) | 51, 438, 871, 1357, 1552 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1035 |
| BpiI | GAAGAC | 1 cut(s) | 666 |
| BpmI | CTGGAG | 3 cut(s) | 688, 1469, 1806 |
| Bpu10I | CCTNAGC | 1 cut(s) | 774 |
| BpuEI | CTTGAG | 1 cut(s) | 299 |
| BpuMI | CCSGG | 2 cut(s) | 111, 474 |
| Bsa29I | ATCGAT | 1 cut(s) | 865 |
| BsaAI | YACGTR | 2 cut(s) | 1136, 1207 |
| BsaJI | CCNNGG | 2 cut(s) | 528, 705 |
| BsaWI | WCCGGW | 1 cut(s) | 960 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 31, 61, 1779, 1809 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 479, 480, 1027, 1531, 1532, 1695 |
| Bse118I | RCCGGY | 1 cut(s) | 1441 |
| Bse1I | ACTGG | 3 cut(s) | 577, 589, 1645 |
| Bse3DI | GCAATG | 1 cut(s) | 430 |
| BseBI | CCWGG | 2 cut(s) | 347, 1487 |
| BseCI | ATCGAT | 1 cut(s) | 865 |
| BseDI | CCNNGG | 2 cut(s) | 528, 705 |
| BseGI | GGATG | 6 cut(s) | 547, 1078, 1521, 1539, 1567, 1600 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 479, 480, 1027, 1531, 1532, 1695 |
| BseMI | GCAATG | 1 cut(s) | 430 |
| BseMII | CTCAG | 2 cut(s) | 933, 1365 |
| BseNI | ACTGG | 3 cut(s) | 577, 589, 1645 |
| BseRI | GAGGAG | 3 cut(s) | 221, 230, 266 |
| BseSI | GKGCMC | 1 cut(s) | 1121 |
| BseXI | GCAGC | 5 cut(s) | 205, 211, 314, 1329, 1388 |
| BseYI | CCCAGC | 1 cut(s) | 814 |
| BsgI | GTGCAG | 1 cut(s) | 212 |
| Bsh1236I | CGCG | 2 cut(s) | 143, 181 |
| Bsh1285I | CGRYCG | 1 cut(s) | 965 |
| BshFI | GGCC | 6 cut(s) | 417, 526, 772, 1433, 1482, 1504 |
| BshVI | ATCGAT | 1 cut(s) | 865 |
| BsiEI | CGRYCG | 1 cut(s) | 965 |
| BsiHKAI | GWGCWC | 1 cut(s) | 948 |
| BsiSI | CCGG | 7 cut(s) | 110, 392, 474, 539, 961, 1442, 1505 |
| BslFI | GGGAC | 3 cut(s) | 24, 895, 1326 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 479, 480, 1027, 1531, 1532, 1695 |
| BsmAI | GTCTC | 2 cut(s) | 82, 248 |
| BsmFI | GGGAC | 3 cut(s) | 24, 895, 1326 |
| BsnI | GGCC | 6 cut(s) | 417, 526, 772, 1433, 1482, 1504 |
| Bsp1286I | GDGCHC | 2 cut(s) | 948, 1121 |
| Bsp143I | GATC | 9 cut(s) | 598, 729, 888, 1126, 1509, 1535, 1615, 1666, 1877 |
| Bsp19I | CCATGG | 1 cut(s) | 705 |
| BspACI | CCGC | 4 cut(s) | 93, 141, 196, 664 |
| BspANI | GGCC | 6 cut(s) | 417, 526, 772, 1433, 1482, 1504 |
| BspCNI | CTCAG | 2 cut(s) | 934, 1364 |
| BspDI | ATCGAT | 1 cut(s) | 865 |
| BspFNI | CGCG | 2 cut(s) | 143, 181 |
| BspHI | TCATGA | 1 cut(s) | 1267 |
| BspLI | GGNNCC | 2 cut(s) | 222, 1537 |
| BspPI | GGATC | 4 cut(s) | 593, 1530, 1543, 1674 |
| BspTI | CTTAAG | 1 cut(s) | 1238 |
| BsrBI | CCGCTC | 1 cut(s) | 95 |
| BsrDI | GCAATG | 1 cut(s) | 430 |
| BsrFI | RCCGGY | 1 cut(s) | 1441 |
| BsrI | ACTGG | 3 cut(s) | 577, 589, 1645 |
| BssAI | RCCGGY | 1 cut(s) | 1441 |
| BssECI | CCNNGG | 2 cut(s) | 528, 705 |
| BssMI | GATC | 9 cut(s) | 598, 729, 888, 1126, 1509, 1535, 1615, 1666, 1877 |
| BssNAI | GTATAC | 2 cut(s) | 700, 929 |
| BssT1I | CCWWGG | 2 cut(s) | 528, 705 |
| Bst1107I | GTATAC | 2 cut(s) | 700, 929 |
| Bst2UI | CCWGG | 2 cut(s) | 347, 1487 |
| Bst4CI | ACNGT | 4 cut(s) | 926, 954, 991, 1187 |
| Bst6I | CTCTTC | 1 cut(s) | 720 |
| BstAFI | CTTAAG | 1 cut(s) | 1238 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 327 |
| BstBAI | YACGTR | 2 cut(s) | 1136, 1207 |
| BstDEI | CTNAG | 7 cut(s) | 243, 677, 774, 942, 1022, 1351, 1629 |
| BstDSI | CCRYGG | 1 cut(s) | 705 |
| BstF5I | GGATG | 6 cut(s) | 547, 1078, 1521, 1539, 1567, 1600 |
| BstFNI | CGCG | 2 cut(s) | 143, 181 |
| BstHHI | GCGC | 1 cut(s) | 181 |
| BstKTI | GATC | 9 cut(s) | 601, 732, 891, 1129, 1512, 1538, 1618, 1669, 1880 |
| BstMAI | GTCTC | 2 cut(s) | 82, 248 |
| BstMBI | GATC | 9 cut(s) | 598, 729, 888, 1126, 1509, 1535, 1615, 1666, 1877 |
| BstMCI | CGRYCG | 1 cut(s) | 965 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 199, 327, 1016, 1821 |
| BstNI | CCWGG | 2 cut(s) | 347, 1487 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1035 |
| BstSCI | CCNGG | 4 cut(s) | 109, 345, 472, 1485 |
| BstSLI | GKGCMC | 1 cut(s) | 1121 |
| BstSNI | TACGTA | 1 cut(s) | 1136 |
| BstUI | CGCG | 2 cut(s) | 143, 181 |
| BstV1I | GCAGC | 5 cut(s) | 205, 211, 314, 1329, 1388 |
| BstV2I | GAAGAC | 1 cut(s) | 666 |
| BstX2I | RGATCY | 2 cut(s) | 1535, 1877 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 425, 878 |
| BstYI | RGATCY | 2 cut(s) | 1535, 1877 |
| BstZ17I | GTATAC | 2 cut(s) | 700, 929 |
| Bsu15I | ATCGAT | 1 cut(s) | 865 |
| BsuI | GTATCC | 1 cut(s) | 1187 |
| BsuRI | GGCC | 6 cut(s) | 417, 526, 772, 1433, 1482, 1504 |
| BsuTUI | ATCGAT | 1 cut(s) | 865 |
| BtgI | CCRYGG | 1 cut(s) | 705 |
| BtgZI | GCGATG | 2 cut(s) | 1179, 1385 |
| BtrI | CACGTC | 1 cut(s) | 169 |
| BtsCI | GGATG | 6 cut(s) | 547, 1078, 1521, 1539, 1567, 1600 |
| BtsI | GCAGTG | 2 cut(s) | 418, 699 |
| BtsIMutI | CAGTG | 4 cut(s) | 418, 699, 1192, 1652 |
| CciI | TCATGA | 1 cut(s) | 1267 |
| CfoI | GCGC | 1 cut(s) | 181 |
| Cfr10I | RCCGGY | 1 cut(s) | 1441 |
| Cfr13I | GGNCC | 9 cut(s) | 90, 220, 525, 532, 1030, 1431, 1480, 1502, 1893 |
| ClaI | ATCGAT | 1 cut(s) | 865 |
| CseI | GACGC | 2 cut(s) | 860, 1323 |
| Csp6I | GTAC | 3 cut(s) | 616, 1227, 1414 |
| CviAII | CATG | 8 cut(s) | 203, 317, 510, 604, 706, 872, 1268, 1309 |
| CviQI | GTAC | 3 cut(s) | 616, 1227, 1414 |
| DdeI | CTNAG | 7 cut(s) | 243, 677, 774, 942, 1022, 1351, 1629 |
| DpnI | GATC | 9 cut(s) | 600, 731, 890, 1128, 1511, 1537, 1617, 1668, 1879 |
| DpnII | GATC | 9 cut(s) | 598, 729, 888, 1126, 1509, 1535, 1615, 1666, 1877 |
| Eam1104I | CTCTTC | 1 cut(s) | 720 |
| EarI | CTCTTC | 1 cut(s) | 720 |
| Ecl136II | GAGCTC | 1 cut(s) | 946 |
| Eco105I | TACGTA | 1 cut(s) | 1136 |
| Eco130I | CCWWGG | 2 cut(s) | 528, 705 |
| Eco24I | GRGCYC | 1 cut(s) | 948 |
| Eco32I | GATATC | 1 cut(s) | 1043 |
| Eco47I | GGWCC | 5 cut(s) | 90, 220, 532, 1030, 1893 |
| Eco53kI | GAGCTC | 1 cut(s) | 946 |
| Eco57I | CTGAAG | 1 cut(s) | 279 |
| EcoICRI | GAGCTC | 1 cut(s) | 946 |
| EcoO109I | RGGNCCY | 2 cut(s) | 220, 1480 |
| EcoRI | GAATTC | 1 cut(s) | 485 |
| EcoRII | CCWGG | 2 cut(s) | 345, 1485 |
| EcoRV | GATATC | 1 cut(s) | 1043 |
| EcoT14I | CCWWGG | 2 cut(s) | 528, 705 |
| EcoT38I | GRGCYC | 1 cut(s) | 948 |
| ErhI | CCWWGG | 2 cut(s) | 528, 705 |
| FaeI | CATG | 8 cut(s) | 206, 320, 513, 607, 709, 875, 1271, 1312 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1622, 1654 |
| FaqI | GGGAC | 3 cut(s) | 24, 895, 1326 |
| FatI | CATG | 8 cut(s) | 202, 316, 509, 603, 705, 871, 1267, 1308 |
| FbaI | TGATCA | 2 cut(s) | 888, 1126 |
| FblI | GTMKAC | 3 cut(s) | 699, 928, 1383 |
| Fnu4HI | GCNGC | 6 cut(s) | 194, 197, 200, 328, 1318, 1402 |
| FokI | GGATG | 6 cut(s) | 554, 1085, 1508, 1526, 1574, 1607 |
| FriOI | GRGCYC | 1 cut(s) | 948 |
| Fsp4HI | GCNGC | 6 cut(s) | 194, 197, 200, 328, 1318, 1402 |
| FspBI | CTAG | 4 cut(s) | 444, 458, 1143, 1821 |
| GlaI | GCGC | 1 cut(s) | 180 |
| GluI | GCNGC | 6 cut(s) | 194, 197, 200, 328, 1318, 1402 |
| GsaI | CCCAGC | 1 cut(s) | 818 |
| GsuI | CTGGAG | 3 cut(s) | 688, 1469, 1806 |
| HaeIII | GGCC | 6 cut(s) | 417, 526, 772, 1433, 1482, 1504 |
| HapII | CCGG | 7 cut(s) | 110, 392, 474, 539, 961, 1442, 1505 |
| HgaI | GACGC | 2 cut(s) | 860, 1323 |
| HhaI | GCGC | 1 cut(s) | 181 |
| Hin1II | CATG | 8 cut(s) | 206, 320, 513, 607, 709, 875, 1271, 1312 |
| Hin6I | GCGC | 1 cut(s) | 179 |
| HinP1I | GCGC | 1 cut(s) | 179 |
| HincII | GTYRAC | 2 cut(s) | 1183, 1761 |
| HindII | GTYRAC | 2 cut(s) | 1183, 1761 |
| HindIII | AAGCTT | 3 cut(s) | 983, 1235, 1325 |
| HinfI | GANTC | 8 cut(s) | 66, 373, 740, 867, 967, 1001, 1552, 1741 |
| HpaII | CCGG | 7 cut(s) | 110, 392, 474, 539, 961, 1442, 1505 |
| HphI | GGTGA | 5 cut(s) | 148, 962, 1078, 1387, 1483 |
| Hpy166II | GTNNAC | 6 cut(s) | 700, 929, 1030, 1183, 1384, 1761 |
| Hpy188I | TCNGA | 6 cut(s) | 60, 386, 943, 1131, 1354, 1884 |
| Hpy8I | GTNNAC | 6 cut(s) | 700, 929, 1030, 1183, 1384, 1761 |
| Hpy99I | CGWCG | 2 cut(s) | 1041, 1811 |
| HpyAV | CCTTC | 7 cut(s) | 241, 407, 524, 802, 907, 1462, 1840 |
| HpyCH4III | ACNGT | 4 cut(s) | 926, 954, 991, 1187 |
| HpyCH4IV | ACGT | 4 cut(s) | 168, 1135, 1206, 1693 |
| HpyCH4V | TGCA | 6 cut(s) | 193, 288, 423, 468, 1404, 1850 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 199, 327, 1016, 1821 |
| HpyF3I | CTNAG | 7 cut(s) | 243, 677, 774, 942, 1022, 1351, 1629 |
| HpySE526I | ACGT | 4 cut(s) | 168, 1135, 1206, 1693 |
| Hsp92II | CATG | 8 cut(s) | 206, 320, 513, 607, 709, 875, 1271, 1312 |
| HspAI | GCGC | 1 cut(s) | 179 |
| Ksp22I | TGATCA | 2 cut(s) | 888, 1126 |
| Kzo9I | GATC | 9 cut(s) | 598, 729, 888, 1126, 1509, 1535, 1615, 1666, 1877 |
| LmnI | GCTCC | 3 cut(s) | 951, 1591, 1698 |
| Lsp1109I | GCAGC | 5 cut(s) | 205, 211, 314, 1329, 1388 |
| LweI | GCATC | 5 cut(s) | 51, 438, 871, 1357, 1552 |
| MaeI | CTAG | 4 cut(s) | 444, 458, 1143, 1821 |
| MaeII | ACGT | 4 cut(s) | 168, 1135, 1206, 1693 |
| MaeIII | GTNAC | 4 cut(s) | 230, 625, 1624, 1837 |
| MalI | GATC | 9 cut(s) | 600, 731, 890, 1128, 1511, 1537, 1617, 1668, 1879 |
| MbiI | CCGCTC | 1 cut(s) | 95 |
| MboI | GATC | 9 cut(s) | 598, 729, 888, 1126, 1509, 1535, 1615, 1666, 1877 |
| MboII | GAAGA | 7 cut(s) | 272, 671, 737, 1376, 1477, 1778, 1781 |
| MflI | RGATCY | 2 cut(s) | 1535, 1877 |
| MhlI | GDGCHC | 2 cut(s) | 948, 1121 |
| MluCI | AATT | 8 cut(s) | 401, 477, 485, 819, 836, 1633, 1791, 1860 |
| MlyI | GAGTC | 2 cut(s) | 1561, 1750 |
| MmeI | TCCRAC | 2 cut(s) | 973, 1676 |
| MroXI | GAANNNNTTC | 1 cut(s) | 840 |
| MseI | TTAA | 5 cut(s) | 1083, 1218, 1239, 1569, 1797 |
| MslI | CAYNNNNRTG | 4 cut(s) | 423, 876, 1272, 1544 |
| MspA1I | CMGCKG | 2 cut(s) | 196, 666 |
| MspCI | CTTAAG | 1 cut(s) | 1238 |
| MspI | CCGG | 7 cut(s) | 110, 392, 474, 539, 961, 1442, 1505 |
| MspR9I | CCNGG | 4 cut(s) | 111, 347, 474, 1487 |
| MvaI | CCWGG | 2 cut(s) | 347, 1487 |
| MvnI | CGCG | 2 cut(s) | 143, 181 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 199, 327, 1016, 1821 |
| NciI | CCSGG | 2 cut(s) | 111, 474 |
| NcoI | CCATGG | 1 cut(s) | 705 |
| NdeII | GATC | 9 cut(s) | 598, 729, 888, 1126, 1509, 1535, 1615, 1666, 1877 |
| NlaIII | CATG | 8 cut(s) | 206, 320, 513, 607, 709, 875, 1271, 1312 |
| NlaIV | GGNNCC | 2 cut(s) | 222, 1537 |
| NmuCI | GTSAC | 1 cut(s) | 625 |
| PagI | TCATGA | 1 cut(s) | 1267 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1203 |
| PdmI | GAANNNNTTC | 1 cut(s) | 840 |
| PfeI | GAWTC | 6 cut(s) | 66, 373, 740, 867, 967, 1001 |
| PfoI | TCCNGGA | 2 cut(s) | 345, 472 |
| PkrI | GCNGC | 6 cut(s) | 195, 198, 201, 329, 1319, 1403 |
| PleI | GAGTC | 2 cut(s) | 1560, 1749 |
| PpsI | GAGTC | 2 cut(s) | 1560, 1749 |
| Ppu21I | YACGTR | 2 cut(s) | 1136, 1207 |
| PpuMI | RGGWCCY | 1 cut(s) | 220 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1035 |
| Psp124BI | GAGCTC | 1 cut(s) | 948 |
| Psp1406I | AACGTT | 1 cut(s) | 1693 |
| Psp5II | RGGWCCY | 1 cut(s) | 220 |
| Psp6I | CCWGG | 2 cut(s) | 345, 1485 |
| PspFI | CCCAGC | 1 cut(s) | 814 |
| PspGI | CCWGG | 2 cut(s) | 345, 1485 |
| PspN4I | GGNNCC | 2 cut(s) | 222, 1537 |
| PspPI | GGNCC | 9 cut(s) | 90, 220, 525, 532, 1030, 1431, 1480, 1502, 1893 |
| PspPPI | RGGWCCY | 1 cut(s) | 220 |
| PsuI | RGATCY | 2 cut(s) | 1535, 1877 |
| RsaI | GTAC | 3 cut(s) | 617, 1228, 1415 |
| RsaNI | GTAC | 3 cut(s) | 616, 1227, 1414 |
| RseI | CAYNNNNRTG | 4 cut(s) | 423, 876, 1272, 1544 |
| SacI | GAGCTC | 1 cut(s) | 948 |
| SaqAI | TTAA | 5 cut(s) | 1083, 1218, 1239, 1569, 1797 |
| SatI | GCNGC | 6 cut(s) | 194, 197, 200, 328, 1318, 1402 |
| Sau3AI | GATC | 9 cut(s) | 598, 729, 888, 1126, 1509, 1535, 1615, 1666, 1877 |
| Sau96I | GGNCC | 9 cut(s) | 90, 220, 525, 532, 1030, 1431, 1480, 1502, 1893 |
| SchI | GAGTC | 2 cut(s) | 1561, 1750 |
| ScrFI | CCNGG | 4 cut(s) | 111, 347, 474, 1487 |
| SduI | GDGCHC | 2 cut(s) | 948, 1121 |
| SfaNI | GCATC | 5 cut(s) | 51, 438, 871, 1357, 1552 |
| SinI | GGWCC | 5 cut(s) | 90, 220, 532, 1030, 1893 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 423, 876, 1272, 1544 |
| SmlI | CTYRAG | 2 cut(s) | 278, 1238 |
| SmoI | CTYRAG | 2 cut(s) | 278, 1238 |
| SnaBI | TACGTA | 1 cut(s) | 1136 |
| Sse9I | AATT | 8 cut(s) | 401, 477, 485, 819, 836, 1633, 1791, 1860 |
| SsiI | CCGC | 4 cut(s) | 93, 141, 196, 664 |
| SspI | AATATT | 1 cut(s) | 1801 |
| SspMI | CTAG | 4 cut(s) | 444, 458, 1143, 1821 |
| SstI | GAGCTC | 1 cut(s) | 948 |
| StyD4I | CCNGG | 4 cut(s) | 109, 345, 472, 1485 |
| StyI | CCWWGG | 2 cut(s) | 528, 705 |
| TaaI | ACNGT | 4 cut(s) | 926, 954, 991, 1187 |
| TaiI | ACGT | 4 cut(s) | 171, 1138, 1209, 1696 |
| TaqII | GACCGA | 2 cut(s) | 1294, 1901 |
| TasI | AATT | 8 cut(s) | 401, 477, 485, 819, 836, 1633, 1791, 1860 |
| TatI | WGTACW | 2 cut(s) | 615, 1413 |
| TauI | GCSGC | 1 cut(s) | 199 |
| TfiI | GAWTC | 6 cut(s) | 66, 373, 740, 867, 967, 1001 |
| Tru1I | TTAA | 5 cut(s) | 1083, 1218, 1239, 1569, 1797 |
| Tru9I | TTAA | 5 cut(s) | 1083, 1218, 1239, 1569, 1797 |
| TscAI | CASTG | 4 cut(s) | 425, 699, 1192, 1652 |
| TseFI | GTSAC | 1 cut(s) | 625 |
| TseI | GCWGC | 5 cut(s) | 193, 199, 327, 1317, 1401 |
| Tsp45I | GTSAC | 1 cut(s) | 625 |
| TspDTI | ATGAA | 9 cut(s) | 17, 569, 672, 1014, 1071, 1377, 1478, 1644, 1872 |
| TspGWI | ACGGA | 1 cut(s) | 1778 |
| TspRI | CASTG | 4 cut(s) | 425, 699, 1192, 1652 |
| Vha464I | CTTAAG | 1 cut(s) | 1238 |
| VpaK11BI | GGWCC | 5 cut(s) | 90, 220, 532, 1030, 1893 |
| XapI | RAATTY | 1 cut(s) | 485 |
| XbaI | TCTAGA | 1 cut(s) | 1142 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 569, 1493 |
| XmiI | GTMKAC | 3 cut(s) | 699, 928, 1383 |
| XmnI | GAANNNNTTC | 1 cut(s) | 840 |
| XspI | CTAG | 4 cut(s) | 444, 458, 1143, 1821 |