Cyclic phosphodiesterase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 115 |
| AccII | CGCG | 1 cut(s) | 179 |
| AciI | CCGC | 5 cut(s) | 18, 111, 122, 215, 295 |
| AclWI | GGATC | 1 cut(s) | 80 |
| AfaI | GTAC | 1 cut(s) | 212 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 149, 162 |
| AflIII | ACRYGT | 1 cut(s) | 60 |
| AgsI | TTSAA | 1 cut(s) | 623 |
| AjiI | CACGTC | 1 cut(s) | 61 |
| AjnI | CCWGG | 1 cut(s) | 217 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 71, 103 |
| AluBI | AGCT | 4 cut(s) | 400, 425, 471, 575 |
| AluI | AGCT | 4 cut(s) | 400, 425, 471, 575 |
| Alw26I | GTCTC | 1 cut(s) | 446 |
| AlwI | GGATC | 1 cut(s) | 80 |
| Ama87I | CYCGRG | 2 cut(s) | 243, 426 |
| AoxI | GGCC | 2 cut(s) | 42, 582 |
| ApeKI | GCWGC | 1 cut(s) | 336 |
| AspLEI | GCGC | 2 cut(s) | 181, 501 |
| AspS9I | GGNCC | 5 cut(s) | 42, 91, 153, 195, 587 |
| AsuC2I | CCSGG | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 2 cut(s) | 94, 542 |
| AvaI | CYCGRG | 2 cut(s) | 243, 426 |
| AvaII | GGWCC | 4 cut(s) | 91, 153, 195, 587 |
| BaeGI | GKGCMC | 1 cut(s) | 118 |
| BanI | GGYRCC | 1 cut(s) | 115 |
| BanII | GRGCYC | 1 cut(s) | 135 |
| BbvI | GCAGC | 1 cut(s) | 323 |
| BccI | CCATC | 1 cut(s) | 164 |
| BceAI | ACGGC | 1 cut(s) | 625 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 9, 43 |
| BciT130I | CCWGG | 1 cut(s) | 219 |
| BciVI | GTATCC | 1 cut(s) | 42 |
| BcnI | CCSGG | 1 cut(s) | 98 |
| BcoDI | GTCTC | 1 cut(s) | 446 |
| BfaI | CTAG | 2 cut(s) | 330, 462 |
| BfmI | CTRYAG | 1 cut(s) | 628 |
| BfoI | RGCGCY | 1 cut(s) | 502 |
| BfuI | GTATCC | 1 cut(s) | 42 |
| BisI | GCNGC | 1 cut(s) | 337 |
| BlsI | GCNGC | 1 cut(s) | 338 |
| Bme1390I | CCNGG | 2 cut(s) | 98, 219 |
| Bme18I | GGWCC | 4 cut(s) | 91, 153, 195, 587 |
| BmeT110I | CYCGRG | 2 cut(s) | 243, 426 |
| BmgBI | CACGTC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 5 cut(s) | 42, 91, 153, 195, 587 |
| BmiI | GGNNCC | 3 cut(s) | 117, 154, 197 |
| BmrFI | CCNGG | 2 cut(s) | 98, 219 |
| BmsI | GCATC | 2 cut(s) | 306, 323 |
| Bpu10I | CCTNAGC | 1 cut(s) | 467 |
| BpuMI | CCSGG | 1 cut(s) | 98 |
| BsaI | GGTCTC | 1 cut(s) | 446 |
| BsaWI | WCCGGW | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 149, 162 |
| Bse118I | RCCGGY | 1 cut(s) | 118 |
| Bse1I | ACTGG | 2 cut(s) | 280, 313 |
| Bse3DI | GCAATG | 1 cut(s) | 635 |
| BseBI | CCWGG | 1 cut(s) | 219 |
| BseGI | GGATG | 3 cut(s) | 156, 297, 454 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 149, 162 |
| BseMI | GCAATG | 1 cut(s) | 635 |
| BseMII | CTCAG | 2 cut(s) | 458, 585 |
| BseNI | ACTGG | 2 cut(s) | 280, 313 |
| BseRI | GAGGAG | 1 cut(s) | 425 |
| BseSI | GKGCMC | 1 cut(s) | 118 |
| BseXI | GCAGC | 1 cut(s) | 323 |
| BsgI | GTGCAG | 2 cut(s) | 579, 634 |
| Bsh1236I | CGCG | 1 cut(s) | 179 |
| Bsh1285I | CGRYCG | 2 cut(s) | 70, 147 |
| BshFI | GGCC | 2 cut(s) | 44, 584 |
| BshNI | GGYRCC | 1 cut(s) | 115 |
| BsiEI | CGRYCG | 2 cut(s) | 70, 147 |
| BsiHKCI | CYCGRG | 2 cut(s) | 243, 426 |
| BsiSI | CCGG | 4 cut(s) | 35, 97, 119, 585 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 149, 162 |
| BsmAI | GTCTC | 1 cut(s) | 446 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsmI | GAATGC | 1 cut(s) | 491 |
| BsnI | GGCC | 2 cut(s) | 44, 584 |
| Bso31I | GGTCTC | 1 cut(s) | 446 |
| BsoBI | CYCGRG | 2 cut(s) | 243, 426 |
| Bsp1286I | GDGCHC | 2 cut(s) | 118, 135 |
| Bsp143I | GATC | 4 cut(s) | 67, 72, 126, 144 |
| BspACI | CCGC | 5 cut(s) | 18, 111, 122, 215, 295 |
| BspANI | GGCC | 2 cut(s) | 44, 584 |
| BspCNI | CTCAG | 2 cut(s) | 459, 584 |
| BspFNI | CGCG | 1 cut(s) | 179 |
| BspLI | GGNNCC | 3 cut(s) | 117, 154, 197 |
| BspPI | GGATC | 1 cut(s) | 80 |
| BspT107I | GGYRCC | 1 cut(s) | 115 |
| BspTNI | GGTCTC | 1 cut(s) | 446 |
| BsrDI | GCAATG | 1 cut(s) | 635 |
| BsrFI | RCCGGY | 1 cut(s) | 118 |
| BsrI | ACTGG | 2 cut(s) | 280, 313 |
| BssAI | RCCGGY | 1 cut(s) | 118 |
| BssMI | GATC | 4 cut(s) | 67, 72, 126, 144 |
| Bst2UI | CCWGG | 1 cut(s) | 219 |
| Bst4CI | ACNGT | 1 cut(s) | 395 |
| Bst6I | CTCTTC | 1 cut(s) | 402 |
| BstC8I | GCNNGC | 1 cut(s) | 265 |
| BstDEI | CTNAG | 2 cut(s) | 467, 571 |
| BstF5I | GGATG | 3 cut(s) | 156, 297, 454 |
| BstFNI | CGCG | 1 cut(s) | 179 |
| BstH2I | RGCGCY | 1 cut(s) | 502 |
| BstHHI | GCGC | 2 cut(s) | 181, 501 |
| BstKTI | GATC | 4 cut(s) | 70, 75, 129, 147 |
| BstMAI | GTCTC | 1 cut(s) | 446 |
| BstMBI | GATC | 4 cut(s) | 67, 72, 126, 144 |
| BstMCI | CGRYCG | 2 cut(s) | 70, 147 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 239, 581 |
| BstNI | CCWGG | 1 cut(s) | 219 |
| BstSCI | CCNGG | 2 cut(s) | 96, 217 |
| BstSFI | CTRYAG | 1 cut(s) | 628 |
| BstSLI | GKGCMC | 1 cut(s) | 118 |
| BstUI | CGCG | 1 cut(s) | 179 |
| BstV1I | GCAGC | 1 cut(s) | 323 |
| BsuI | GTATCC | 1 cut(s) | 42 |
| BsuRI | GGCC | 2 cut(s) | 44, 584 |
| BtrI | CACGTC | 1 cut(s) | 61 |
| BtsCI | GGATG | 3 cut(s) | 156, 297, 454 |
| BtsI | GCAGTG | 2 cut(s) | 237, 567 |
| BtsIMutI | CAGTG | 3 cut(s) | 237, 287, 567 |
| Cac8I | GCNNGC | 1 cut(s) | 265 |
| CfoI | GCGC | 2 cut(s) | 181, 501 |
| Cfr10I | RCCGGY | 1 cut(s) | 118 |
| Cfr13I | GGNCC | 5 cut(s) | 42, 91, 153, 195, 587 |
| CseI | GACGC | 1 cut(s) | 185 |
| Csp6I | GTAC | 1 cut(s) | 211 |
| CviQI | GTAC | 1 cut(s) | 211 |
| DdeI | CTNAG | 2 cut(s) | 467, 571 |
| DpnI | GATC | 4 cut(s) | 69, 74, 128, 146 |
| DpnII | GATC | 4 cut(s) | 67, 72, 126, 144 |
| Eam1104I | CTCTTC | 1 cut(s) | 402 |
| EarI | CTCTTC | 1 cut(s) | 402 |
| EciI | GGCGGA | 1 cut(s) | 137 |
| Eco24I | GRGCYC | 1 cut(s) | 135 |
| Eco31I | GGTCTC | 1 cut(s) | 446 |
| Eco47I | GGWCC | 4 cut(s) | 91, 153, 195, 587 |
| Eco88I | CYCGRG | 2 cut(s) | 243, 426 |
| EcoO109I | RGGNCCY | 1 cut(s) | 195 |
| EcoRII | CCWGG | 1 cut(s) | 217 |
| EcoT38I | GRGCYC | 1 cut(s) | 135 |
| FaiI | YATR | 4 cut(s) | 345, 479, 519, 630 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FauI | CCCGC | 2 cut(s) | 104, 222 |
| Fnu4HI | GCNGC | 1 cut(s) | 337 |
| FokI | GGATG | 3 cut(s) | 143, 284, 461 |
| FriOI | GRGCYC | 1 cut(s) | 135 |
| Fsp4HI | GCNGC | 1 cut(s) | 337 |
| FspBI | CTAG | 2 cut(s) | 330, 462 |
| GlaI | GCGC | 2 cut(s) | 180, 500 |
| GluI | GCNGC | 1 cut(s) | 337 |
| HaeII | RGCGCY | 1 cut(s) | 502 |
| HaeIII | GGCC | 2 cut(s) | 44, 584 |
| HapII | CCGG | 4 cut(s) | 35, 97, 119, 585 |
| HgaI | GACGC | 1 cut(s) | 185 |
| HhaI | GCGC | 2 cut(s) | 181, 501 |
| Hin6I | GCGC | 2 cut(s) | 179, 499 |
| HinP1I | GCGC | 2 cut(s) | 179, 499 |
| HincII | GTYRAC | 1 cut(s) | 596 |
| HindII | GTYRAC | 1 cut(s) | 596 |
| HpaII | CCGG | 4 cut(s) | 35, 97, 119, 585 |
| HphI | GGTGA | 2 cut(s) | 94, 542 |
| Hpy166II | GTNNAC | 1 cut(s) | 596 |
| Hpy188I | TCNGA | 3 cut(s) | 67, 72, 144 |
| Hpy188III | TCNNGA | 3 cut(s) | 76, 330, 428 |
| Hpy8I | GTNNAC | 1 cut(s) | 596 |
| HpyAV | CCTTC | 2 cut(s) | 73, 244 |
| HpyCH4III | ACNGT | 1 cut(s) | 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 60 |
| HpyCH4V | TGCA | 5 cut(s) | 14, 491, 560, 565, 615 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 239, 581 |
| HpyF3I | CTNAG | 2 cut(s) | 467, 571 |
| HpySE526I | ACGT | 1 cut(s) | 60 |
| HspAI | GCGC | 2 cut(s) | 179, 499 |
| Kzo9I | GATC | 4 cut(s) | 67, 72, 126, 144 |
| LmnI | GCTCC | 1 cut(s) | 506 |
| Lsp1109I | GCAGC | 1 cut(s) | 323 |
| LweI | GCATC | 2 cut(s) | 306, 323 |
| MaeI | CTAG | 2 cut(s) | 330, 462 |
| MaeII | ACGT | 1 cut(s) | 60 |
| MalI | GATC | 4 cut(s) | 69, 74, 128, 146 |
| MboI | GATC | 4 cut(s) | 67, 72, 126, 144 |
| MboII | GAAGA | 2 cut(s) | 419, 430 |
| MhlI | GDGCHC | 2 cut(s) | 118, 135 |
| MluCI | AATT | 1 cut(s) | 566 |
| MmeI | TCCRAC | 1 cut(s) | 69 |
| MseI | TTAA | 1 cut(s) | 317 |
| MspI | CCGG | 4 cut(s) | 35, 97, 119, 585 |
| MspR9I | CCNGG | 2 cut(s) | 98, 219 |
| Mva1269I | GAATGC | 1 cut(s) | 491 |
| MvaI | CCWGG | 1 cut(s) | 219 |
| MvnI | CGCG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 239, 581 |
| NciI | CCSGG | 1 cut(s) | 98 |
| NdeII | GATC | 4 cut(s) | 67, 72, 126, 144 |
| NlaIV | GGNNCC | 3 cut(s) | 117, 154, 197 |
| PaeR7I | CTCGAG | 2 cut(s) | 243, 426 |
| PctI | GAATGC | 1 cut(s) | 491 |
| PflFI | GACNNNGTC | 1 cut(s) | 591 |
| PfoI | TCCNGGA | 1 cut(s) | 96 |
| PkrI | GCNGC | 1 cut(s) | 338 |
| Ple19I | CGATCG | 2 cut(s) | 70, 147 |
| PpuMI | RGGWCCY | 1 cut(s) | 195 |
| Psp5II | RGGWCCY | 1 cut(s) | 195 |
| Psp6I | CCWGG | 1 cut(s) | 217 |
| PspGI | CCWGG | 1 cut(s) | 217 |
| PspN4I | GGNNCC | 3 cut(s) | 117, 154, 197 |
| PspPI | GGNCC | 5 cut(s) | 42, 91, 153, 195, 587 |
| PspPPI | RGGWCCY | 1 cut(s) | 195 |
| PspXI | VCTCGAGB | 1 cut(s) | 243 |
| PsyI | GACNNNGTC | 1 cut(s) | 591 |
| PvuI | CGATCG | 2 cut(s) | 70, 147 |
| RsaI | GTAC | 1 cut(s) | 212 |
| RsaNI | GTAC | 1 cut(s) | 211 |
| SaqAI | TTAA | 1 cut(s) | 317 |
| SatI | GCNGC | 1 cut(s) | 337 |
| Sau3AI | GATC | 4 cut(s) | 67, 72, 126, 144 |
| Sau96I | GGNCC | 5 cut(s) | 42, 91, 153, 195, 587 |
| ScrFI | CCNGG | 2 cut(s) | 98, 219 |
| SduI | GDGCHC | 2 cut(s) | 118, 135 |
| SetI | ASST | 9 cut(s) | 63, 84, 96, 402, 427, 473, 532, 577, 614 |
| SfaNI | GCATC | 2 cut(s) | 306, 323 |
| SfcI | CTRYAG | 1 cut(s) | 628 |
| Sfr274I | CTCGAG | 2 cut(s) | 243, 426 |
| SgrAI | CRCCGGYG | 1 cut(s) | 118 |
| SinI | GGWCC | 4 cut(s) | 91, 153, 195, 587 |
| SlaI | CTCGAG | 2 cut(s) | 243, 426 |
| SmlI | CTYRAG | 2 cut(s) | 243, 426 |
| SmoI | CTYRAG | 2 cut(s) | 243, 426 |
| Sse9I | AATT | 1 cut(s) | 566 |
| SsiI | CCGC | 5 cut(s) | 18, 111, 122, 215, 295 |
| SspMI | CTAG | 2 cut(s) | 330, 462 |
| StyD4I | CCNGG | 2 cut(s) | 96, 217 |
| TaaI | ACNGT | 1 cut(s) | 395 |
| TaiI | ACGT | 1 cut(s) | 63 |
| TaqI | TCGA | 3 cut(s) | 129, 244, 427 |
| TasI | AATT | 1 cut(s) | 566 |
| Tru1I | TTAA | 1 cut(s) | 317 |
| Tru9I | TTAA | 1 cut(s) | 317 |
| TscAI | CASTG | 3 cut(s) | 244, 287, 567 |
| TseI | GCWGC | 1 cut(s) | 336 |
| TspDTI | ATGAA | 3 cut(s) | 267, 534, 624 |
| TspGWI | ACGGA | 1 cut(s) | 149 |
| TspRI | CASTG | 3 cut(s) | 244, 287, 567 |
| Tth111I | GACNNNGTC | 1 cut(s) | 591 |
| VpaK11BI | GGWCC | 4 cut(s) | 91, 153, 195, 587 |
| XbaI | TCTAGA | 1 cut(s) | 329 |
| XhoI | CTCGAG | 2 cut(s) | 243, 426 |
| XspI | CTAG | 2 cut(s) | 330, 462 |