Class S F-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aa_trans | PF01490 | 101 - 503 | 4.9e-53 | Transmembrane amino acid transporter protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 99 |
| Acc65I | GGTACC | 1 cut(s) | 1078 |
| AccB1I | GGYRCC | 2 cut(s) | 758, 1078 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 248 |
| AccI | GTMKAC | 2 cut(s) | 777, 880 |
| AccII | CGCG | 1 cut(s) | 1281 |
| AciI | CCGC | 3 cut(s) | 1053, 1125, 1355 |
| AclWI | GGATC | 1 cut(s) | 833 |
| AcsI | RAATTY | 2 cut(s) | 486, 1142 |
| AcuI | CTGAAG | 1 cut(s) | 1540 |
| AfaI | GTAC | 5 cut(s) | 226, 586, 784, 1080, 1241 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 206, 209, 248, 303, 539, 708, 816 |
| AflII | CTTAAG | 1 cut(s) | 1186 |
| AflIII | ACRYGT | 2 cut(s) | 587, 1279 |
| AgsI | TTSAA | 4 cut(s) | 637, 804, 938, 1199 |
| AhlI | ACTAGT | 1 cut(s) | 1168 |
| AjnI | CCWGG | 2 cut(s) | 241, 296 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1133, 1165 |
| Alw21I | GWGCWC | 1 cut(s) | 261 |
| Alw26I | GTCTC | 1 cut(s) | 751 |
| AlwI | GGATC | 1 cut(s) | 833 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 170, 665 |
| AoxI | GGCC | 4 cut(s) | 238, 1480, 1537, 1559 |
| ApeKI | GCWGC | 4 cut(s) | 1109, 1112, 1182, 1511 |
| ApoI | RAATTY | 2 cut(s) | 486, 1142 |
| Asp718I | GGTACC | 1 cut(s) | 1078 |
| AspS9I | GGNCC | 3 cut(s) | 14, 239, 530 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| AvaII | GGWCC | 2 cut(s) | 14, 530 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 576, 609, 1070, 1103 |
| BanI | GGYRCC | 2 cut(s) | 758, 1078 |
| BanII | GRGCYC | 3 cut(s) | 261, 715, 799 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 142, 174 |
| BbsI | GAAGAC | 1 cut(s) | 1259 |
| Bbv12I | GWGCWC | 1 cut(s) | 261 |
| BbvI | GCAGC | 4 cut(s) | 1099, 1121, 1169, 1498 |
| BccI | CCATC | 7 cut(s) | 194, 215, 293, 387, 770, 964, 1090 |
| BceAI | ACGGC | 1 cut(s) | 1031 |
| BciT130I | CCWGG | 2 cut(s) | 243, 298 |
| BcoDI | GTCTC | 1 cut(s) | 751 |
| BcuI | ACTAGT | 1 cut(s) | 1168 |
| BfaI | CTAG | 6 cut(s) | 11, 269, 422, 551, 741, 1169 |
| BfmI | CTRYAG | 2 cut(s) | 69, 669 |
| BfrI | CTTAAG | 1 cut(s) | 1186 |
| BfuAI | ACCTGC | 1 cut(s) | 99 |
| BisI | GCNGC | 4 cut(s) | 1110, 1113, 1183, 1512 |
| BlpI | GCTNAGC | 1 cut(s) | 697 |
| BlsI | GCNGC | 4 cut(s) | 1111, 1114, 1184, 1513 |
| Bme1390I | CCNGG | 2 cut(s) | 243, 298 |
| Bme18I | GGWCC | 2 cut(s) | 14, 530 |
| BmgT120I | GGNCC | 3 cut(s) | 14, 239, 530 |
| BmiI | GGNNCC | 5 cut(s) | 16, 455, 616, 760, 1080 |
| BmrFI | CCNGG | 2 cut(s) | 243, 298 |
| BmrI | ACTGGG | 1 cut(s) | 557 |
| BmsI | GCATC | 4 cut(s) | 640, 906, 1463, 1523 |
| BmuI | ACTGGG | 1 cut(s) | 557 |
| BpiI | GAAGAC | 1 cut(s) | 1259 |
| BpmI | CTGGAG | 2 cut(s) | 253, 872 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1477 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 697 |
| BpuEI | CTTGAG | 2 cut(s) | 159, 1228 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1418 |
| BsaJI | CCNNGG | 3 cut(s) | 241, 735, 810 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 184, 214, 1223, 1253 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 206, 209, 248, 303, 539, 708, 816 |
| Bse1I | ACTGG | 3 cut(s) | 195, 236, 563 |
| Bse3DI | GCAATG | 3 cut(s) | 702, 950, 1332 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1418 |
| BseBI | CCWGG | 2 cut(s) | 243, 298 |
| BseDI | CCNNGG | 3 cut(s) | 241, 735, 810 |
| BseGI | GGATG | 5 cut(s) | 398, 504, 970, 1396, 1478 |
| BseJI | GATNNNNATC | 1 cut(s) | 1418 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 206, 209, 248, 303, 539, 708, 816 |
| BseMI | GCAATG | 3 cut(s) | 702, 950, 1332 |
| BseMII | CTCAG | 1 cut(s) | 728 |
| BseNI | ACTGG | 3 cut(s) | 195, 236, 563 |
| BseRI | GAGGAG | 3 cut(s) | 225, 446, 1011 |
| BseXI | GCAGC | 4 cut(s) | 1099, 1121, 1169, 1498 |
| BseYI | CCCAGC | 1 cut(s) | 707 |
| BsgI | GTGCAG | 1 cut(s) | 1098 |
| Bsh1236I | CGCG | 1 cut(s) | 1281 |
| BshFI | GGCC | 4 cut(s) | 240, 1482, 1539, 1561 |
| BshNI | GGYRCC | 2 cut(s) | 758, 1078 |
| BsiHKAI | GWGCWC | 1 cut(s) | 261 |
| BslFI | GGGAC | 4 cut(s) | 141, 961, 1167, 1479 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 206, 209, 248, 303, 539, 708, 816 |
| BsmAI | GTCTC | 1 cut(s) | 751 |
| BsmFI | GGGAC | 4 cut(s) | 141, 961, 1167, 1479 |
| BsmI | GAATGC | 2 cut(s) | 892, 911 |
| BsnI | GGCC | 4 cut(s) | 240, 1482, 1539, 1561 |
| Bsp1286I | GDGCHC | 3 cut(s) | 261, 715, 799 |
| Bsp143I | GATC | 1 cut(s) | 838 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 697 |
| Bsp19I | CCATGG | 1 cut(s) | 735 |
| BspACI | CCGC | 3 cut(s) | 1053, 1125, 1355 |
| BspANI | GGCC | 4 cut(s) | 240, 1482, 1539, 1561 |
| BspCNI | CTCAG | 1 cut(s) | 727 |
| BspFNI | CGCG | 1 cut(s) | 1281 |
| BspLI | GGNNCC | 5 cut(s) | 16, 455, 616, 760, 1080 |
| BspMAI | CTGCAG | 1 cut(s) | 73 |
| BspMI | ACCTGC | 1 cut(s) | 99 |
| BspPI | GGATC | 1 cut(s) | 833 |
| BspT107I | GGYRCC | 2 cut(s) | 758, 1078 |
| BspTI | CTTAAG | 1 cut(s) | 1186 |
| BsrDI | GCAATG | 3 cut(s) | 702, 950, 1332 |
| BsrI | ACTGG | 3 cut(s) | 195, 236, 563 |
| BssECI | CCNNGG | 3 cut(s) | 241, 735, 810 |
| BssMI | GATC | 1 cut(s) | 838 |
| BssNAI | GTATAC | 1 cut(s) | 881 |
| BssT1I | CCWWGG | 2 cut(s) | 735, 810 |
| Bst1107I | GTATAC | 1 cut(s) | 881 |
| Bst2UI | CCWGG | 2 cut(s) | 243, 298 |
| Bst4CI | ACNGT | 4 cut(s) | 143, 336, 643, 782 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstAFI | CTTAAG | 1 cut(s) | 1186 |
| BstDEI | CTNAG | 3 cut(s) | 697, 714, 1477 |
| BstDSI | CCRYGG | 1 cut(s) | 735 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 5 cut(s) | 398, 504, 970, 1396, 1478 |
| BstFNI | CGCG | 1 cut(s) | 1281 |
| BstKTI | GATC | 1 cut(s) | 841 |
| BstMAI | GTCTC | 1 cut(s) | 751 |
| BstMBI | GATC | 1 cut(s) | 838 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 521, 1022 |
| BstNI | CCWGG | 2 cut(s) | 243, 298 |
| BstNSI | RCATGY | 3 cut(s) | 559, 591, 696 |
| BstSCI | CCNGG | 2 cut(s) | 241, 296 |
| BstSFI | CTRYAG | 2 cut(s) | 69, 669 |
| BstUI | CGCG | 1 cut(s) | 1281 |
| BstV1I | GCAGC | 4 cut(s) | 1099, 1121, 1169, 1498 |
| BstV2I | GAAGAC | 1 cut(s) | 1259 |
| BstZ17I | GTATAC | 1 cut(s) | 881 |
| BsuRI | GGCC | 4 cut(s) | 240, 1482, 1539, 1561 |
| BtgI | CCRYGG | 1 cut(s) | 735 |
| BtsCI | GGATG | 5 cut(s) | 398, 504, 970, 1396, 1478 |
| BtsI | GCAGTG | 1 cut(s) | 845 |
| BtsIMutI | CAGTG | 3 cut(s) | 570, 666, 845 |
| BveI | ACCTGC | 1 cut(s) | 99 |
| CaiI | CAGNNNCTG | 2 cut(s) | 170, 665 |
| Cfr13I | GGNCC | 3 cut(s) | 14, 239, 530 |
| Csp6I | GTAC | 5 cut(s) | 225, 585, 783, 1079, 1240 |
| CviQI | GTAC | 5 cut(s) | 225, 585, 783, 1079, 1240 |
| DdeI | CTNAG | 3 cut(s) | 697, 714, 1477 |
| DpnI | GATC | 1 cut(s) | 840 |
| DpnII | GATC | 1 cut(s) | 838 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| EciI | GGCGGA | 1 cut(s) | 1140 |
| Ecl136II | GAGCTC | 1 cut(s) | 259 |
| Eco130I | CCWWGG | 2 cut(s) | 735, 810 |
| Eco147I | AGGCCT | 2 cut(s) | 1482, 1561 |
| Eco24I | GRGCYC | 3 cut(s) | 261, 715, 799 |
| Eco47I | GGWCC | 2 cut(s) | 14, 530 |
| Eco53kI | GAGCTC | 1 cut(s) | 259 |
| Eco57I | CTGAAG | 1 cut(s) | 1540 |
| EcoICRI | GAGCTC | 1 cut(s) | 259 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 207 |
| EcoO109I | RGGNCCY | 1 cut(s) | 14 |
| EcoRI | GAATTC | 1 cut(s) | 486 |
| EcoRII | CCWGG | 2 cut(s) | 241, 296 |
| EcoT14I | CCWWGG | 2 cut(s) | 735, 810 |
| EcoT38I | GRGCYC | 3 cut(s) | 261, 715, 799 |
| ErhI | CCWWGG | 2 cut(s) | 735, 810 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 617, 649 |
| FaqI | GGGAC | 4 cut(s) | 141, 961, 1167, 1479 |
| FauNDI | CATATG | 5 cut(s) | 410, 835, 1012, 1390, 1448 |
| FblI | GTMKAC | 2 cut(s) | 777, 880 |
| Fnu4HI | GCNGC | 4 cut(s) | 1110, 1113, 1183, 1512 |
| FokI | GGATG | 5 cut(s) | 405, 491, 957, 1383, 1485 |
| FriOI | GRGCYC | 3 cut(s) | 261, 715, 799 |
| Fsp4HI | GCNGC | 4 cut(s) | 1110, 1113, 1183, 1512 |
| FspBI | CTAG | 6 cut(s) | 11, 269, 422, 551, 741, 1169 |
| GluI | GCNGC | 4 cut(s) | 1110, 1113, 1183, 1512 |
| GsaI | CCCAGC | 1 cut(s) | 711 |
| GsuI | CTGGAG | 2 cut(s) | 253, 872 |
| HaeIII | GGCC | 4 cut(s) | 240, 1482, 1539, 1561 |
| HincII | GTYRAC | 1 cut(s) | 120 |
| HindII | GTYRAC | 1 cut(s) | 120 |
| HindIII | AAGCTT | 2 cut(s) | 626, 1348 |
| HinfI | GANTC | 9 cut(s) | 167, 272, 293, 351, 405, 473, 479, 744, 854 |
| HpaI | GTTAAC | 1 cut(s) | 120 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 4 cut(s) | 120, 690, 778, 881 |
| Hpy188I | TCNGA | 7 cut(s) | 115, 166, 478, 729, 789, 917, 1293 |
| Hpy188III | TCNNGA | 6 cut(s) | 342, 483, 682, 935, 1342, 1423 |
| Hpy8I | GTNNAC | 4 cut(s) | 120, 690, 778, 881 |
| HpyAV | CCTTC | 2 cut(s) | 334, 810 |
| HpyCH4III | ACNGT | 4 cut(s) | 143, 336, 643, 782 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 521, 1022 |
| HpyF3I | CTNAG | 3 cut(s) | 697, 714, 1477 |
| KpnI | GGTACC | 1 cut(s) | 1082 |
| KspAI | GTTAAC | 1 cut(s) | 120 |
| Kzo9I | GATC | 1 cut(s) | 838 |
| LmnI | GCTCC | 1 cut(s) | 459 |
| Lsp1109I | GCAGC | 4 cut(s) | 1099, 1121, 1169, 1498 |
| LweI | GCATC | 4 cut(s) | 640, 906, 1463, 1523 |
| MaeI | CTAG | 6 cut(s) | 11, 269, 422, 551, 741, 1169 |
| MaeIII | GTNAC | 5 cut(s) | 319, 382, 417, 491, 661 |
| MalI | GATC | 1 cut(s) | 840 |
| MboI | GATC | 1 cut(s) | 838 |
| MboII | GAAGA | 7 cut(s) | 92, 227, 230, 625, 1264, 1309, 1546 |
| MfeI | CAATTG | 4 cut(s) | 596, 771, 804, 1089 |
| MhlI | GDGCHC | 3 cut(s) | 261, 715, 799 |
| MluI | ACGCGT | 1 cut(s) | 1279 |
| MlyI | GAGTC | 4 cut(s) | 176, 302, 753, 863 |
| MmeI | TCCRAC | 2 cut(s) | 882, 998 |
| MseI | TTAA | 7 cut(s) | 51, 60, 119, 1187, 1385, 1458, 1564 |
| MslI | CAYNNNNRTG | 3 cut(s) | 430, 1214, 1325 |
| MspA1I | CMGCKG | 1 cut(s) | 1112 |
| MspCI | CTTAAG | 1 cut(s) | 1186 |
| MspR9I | CCNGG | 2 cut(s) | 243, 298 |
| MunI | CAATTG | 4 cut(s) | 596, 771, 804, 1089 |
| Mva1269I | GAATGC | 2 cut(s) | 892, 911 |
| MvaI | CCWGG | 2 cut(s) | 243, 298 |
| MvnI | CGCG | 1 cut(s) | 1281 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 521, 1022 |
| NcoI | CCATGG | 1 cut(s) | 735 |
| NdeI | CATATG | 5 cut(s) | 410, 835, 1012, 1390, 1448 |
| NdeII | GATC | 1 cut(s) | 838 |
| NlaIV | GGNNCC | 5 cut(s) | 16, 455, 616, 760, 1080 |
| NmuCI | GTSAC | 3 cut(s) | 382, 417, 661 |
| NspI | RCATGY | 3 cut(s) | 559, 591, 696 |
| PceI | AGGCCT | 2 cut(s) | 1482, 1561 |
| PciI | ACATGT | 1 cut(s) | 587 |
| PctI | GAATGC | 2 cut(s) | 892, 911 |
| PfeI | GAWTC | 5 cut(s) | 272, 351, 405, 473, 479 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 248 |
| PfoI | TCCNGGA | 1 cut(s) | 296 |
| PkrI | GCNGC | 4 cut(s) | 1111, 1114, 1184, 1513 |
| PleI | GAGTC | 4 cut(s) | 175, 301, 752, 862 |
| PpsI | GAGTC | 4 cut(s) | 175, 301, 752, 862 |
| PpuMI | RGGWCCY | 1 cut(s) | 14 |
| PscI | ACATGT | 1 cut(s) | 587 |
| Psp124BI | GAGCTC | 1 cut(s) | 261 |
| Psp5II | RGGWCCY | 1 cut(s) | 14 |
| Psp6I | CCWGG | 2 cut(s) | 241, 296 |
| PspFI | CCCAGC | 1 cut(s) | 707 |
| PspGI | CCWGG | 2 cut(s) | 241, 296 |
| PspN4I | GGNNCC | 5 cut(s) | 16, 455, 616, 760, 1080 |
| PspPI | GGNCC | 3 cut(s) | 14, 239, 530 |
| PspPPI | RGGWCCY | 1 cut(s) | 14 |
| PstI | CTGCAG | 1 cut(s) | 73 |
| PstNI | CAGNNNCTG | 2 cut(s) | 170, 665 |
| PvuII | CAGCTG | 1 cut(s) | 1112 |
| RsaI | GTAC | 5 cut(s) | 226, 586, 784, 1080, 1241 |
| RsaNI | GTAC | 5 cut(s) | 225, 585, 783, 1079, 1240 |
| RseI | CAYNNNNRTG | 3 cut(s) | 430, 1214, 1325 |
| SacI | GAGCTC | 1 cut(s) | 261 |
| SaqAI | TTAA | 7 cut(s) | 51, 60, 119, 1187, 1385, 1458, 1564 |
| SatI | GCNGC | 4 cut(s) | 1110, 1113, 1183, 1512 |
| Sau3AI | GATC | 1 cut(s) | 838 |
| Sau96I | GGNCC | 3 cut(s) | 14, 239, 530 |
| SchI | GAGTC | 4 cut(s) | 176, 302, 753, 863 |
| ScrFI | CCNGG | 2 cut(s) | 243, 298 |
| SduI | GDGCHC | 3 cut(s) | 261, 715, 799 |
| SfaNI | GCATC | 4 cut(s) | 640, 906, 1463, 1523 |
| SfcI | CTRYAG | 2 cut(s) | 69, 669 |
| SinI | GGWCC | 2 cut(s) | 14, 530 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 430, 1214, 1325 |
| SmlI | CTYRAG | 3 cut(s) | 174, 1186, 1243 |
| SmoI | CTYRAG | 3 cut(s) | 174, 1186, 1243 |
| SpeI | ACTAGT | 1 cut(s) | 1168 |
| SseBI | AGGCCT | 2 cut(s) | 1482, 1561 |
| SsiI | CCGC | 3 cut(s) | 1053, 1125, 1355 |
| SspI | AATATT | 1 cut(s) | 1101 |
| SspMI | CTAG | 6 cut(s) | 11, 269, 422, 551, 741, 1169 |
| SstI | GAGCTC | 1 cut(s) | 261 |
| StuI | AGGCCT | 2 cut(s) | 1482, 1561 |
| StyD4I | CCNGG | 2 cut(s) | 241, 296 |
| StyI | CCWWGG | 2 cut(s) | 735, 810 |
| TaaI | ACNGT | 4 cut(s) | 143, 336, 643, 782 |
| TaqI | TCGA | 1 cut(s) | 1139 |
| TatI | WGTACW | 1 cut(s) | 782 |
| TfiI | GAWTC | 5 cut(s) | 272, 351, 405, 473, 479 |
| Tru1I | TTAA | 7 cut(s) | 51, 60, 119, 1187, 1385, 1458, 1564 |
| Tru9I | TTAA | 7 cut(s) | 51, 60, 119, 1187, 1385, 1458, 1564 |
| TscAI | CASTG | 3 cut(s) | 570, 666, 852 |
| TseFI | GTSAC | 3 cut(s) | 382, 417, 661 |
| TseI | GCWGC | 4 cut(s) | 1109, 1112, 1182, 1511 |
| Tsp45I | GTSAC | 3 cut(s) | 382, 417, 661 |
| TspDTI | ATGAA | 3 cut(s) | 150, 742, 1309 |
| TspRI | CASTG | 3 cut(s) | 570, 666, 852 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 248 |
| Vha464I | CTTAAG | 1 cut(s) | 1186 |
| VpaK11BI | GGWCC | 2 cut(s) | 14, 530 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 207 |
| XapI | RAATTY | 2 cut(s) | 486, 1142 |
| XceI | RCATGY | 3 cut(s) | 559, 591, 696 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 273, 1407 |
| XmiI | GTMKAC | 2 cut(s) | 777, 880 |
| XspI | CTAG | 6 cut(s) | 11, 269, 422, 551, 741, 1169 |