Rroxscaffold_6G00423450

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
44600084 .. 44603893
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423450.1

Sequence Viewer

Length: 1248 bp
ATGAGGTTGAGAATGGCAGAGCTTTCCAAATTGCCACAAGAGATGAAGGTGCGAATCCTGTCAAGGCTGCCTCCAAAATCTCTTATGCGATTGAAATGCGTCCATAGATCCTGGCATGCTTTGATCAGTAGCCCCAATTTCGCAGCCAAACACGTCTCCGTTTCGAAGCACAACAAACTCTCCTCCACCACTACCATTCTTTTCAAACGTTATGTTCTTGACCTCAACACTGACAAGAGGGAAATTGTATTGTCATTGTTTGATTTTTGCCATGATAATAATTGTGTTGATGATGACGATCACCTTAATCCTTTAATGGATGACCTCCATGTTCCGCAGTCTATGGGTCTAAAAAGGAGGGACATATGGACCGGGATCGAGTATATAGAAATTGCATGTCACTGCAATGGAATCATTTGCTTAACCGATTACAGGAAAAGAGTTGTTTTATGCAATCCAGCAATTAAGGAATTCAACCGTCTTCCCGTGTCAAGTCTTGCTCTCTCTTCTGCTGATATTAGACCCAGTGGGTCATCTACAGCTGCTGTAGGATTTGGCTGTGATCTCAAATCTGAAGATTACAAAGTTGTTAGAATTTTACATTCTGCACGAGAGTTTAAGGATAATGATATGGTCATACATCCTCCCAAAGCAGAAGTATTCAGCCTCGTTACAAGGTCTTGGAAAGAAATCAAGACTAAAAATCTTGACAATGAAAGTACAAATATTTGGCCCGATTCAACTGTCTGCATATACTGTAAAGGAAATCTTTATTGGCGTGGACATGAAGAACAGAAGGAATATTTTGATGTTAGCTACTCCTATACAGACGAGGACAATAATTCCGGAGATGAAACTTTTATATTCGAGGACAAAGAGCGGATCATTGCATTTGACATTGGCAGTGAGACATTTCATGTTATATCTTTTCCAAATGGTTATTATTACTATCATAAGGTTTTTGGCTTGTGGAATGACTCCATCGCAGTGAGTACTAGTTGGTGTTCGGAAAATCCATACATAGACATATGGGTGCTGGATAACATTGGTGGGGTTAAGGGGTCGTGGATAAACTGCTTATCCATTGATCCAGTTGTGAACATTGAATTTCCATTGGCATTTGTTGGGAAGAGTGGGCAATCTCTTTTGGTTGCCCTGACGGACCAAAAAAGAGGTGCAGACTCAAAATTATTAAAACTCAGTAAGCAGCAACTCTATTTGCTTCACGAGGAACCCGTTGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

415

Amino Acids

47.5

Weight (kDa)

6.4

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 47 9.6e-10 F-box domain
F-box-like PF12937 9 - 45 3.8e-09 F-box-like
FBA_1 PF07734 129 - 377 1.6e-21 F-box associated beta propeller domain
FBA_3 PF08268 129 - 271 1.1e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1233
AccBSI CCGCTC 1 cut(s) 880
AccIII TCCGGA 1 cut(s) 845
AciI CCGC 2 cut(s) 335, 880
AclI AACGTT 1 cut(s) 208
AclWI GGATC 4 cut(s) 102, 383, 890, 1082
AcsI RAATTY 3 cut(s) 470, 594, 1106
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 2 cut(s) 721, 994
AfiI CCNNNNNNNGG 2 cut(s) 432, 1242
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 5 cut(s) 94, 205, 475, 741, 1106
AhlI ACTAGT 1 cut(s) 995
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 757, 789
AluBI AGCT 3 cut(s) 22, 542, 816
AluI AGCT 3 cut(s) 22, 542, 816
Alw26I GTCTC 2 cut(s) 160, 902
AlwI GGATC 4 cut(s) 102, 383, 890, 1082
AlwNI CAGNNNCTG 1 cut(s) 545
Aor13HI TCCGGA 1 cut(s) 845
AoxI GGCC 1 cut(s) 731
ApeKI GCWGC 4 cut(s) 67, 143, 542, 1207
ApoI RAATTY 3 cut(s) 470, 594, 1106
AspS9I GGNCC 3 cut(s) 369, 732, 1162
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 2 cut(s) 369, 1162
BauI CACGAG 2 cut(s) 609, 1226
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 4 cut(s) 54, 155, 529, 1219
BccI CCATC 1 cut(s) 989
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 160, 902
BcuI ACTAGT 1 cut(s) 995
BfaI CTAG 1 cut(s) 996
BfmI CTRYAG 2 cut(s) 537, 546
BfuAI ACCTGC 1 cut(s) 1233
BisI GCNGC 4 cut(s) 68, 144, 543, 1208
BlsI GCNGC 4 cut(s) 69, 145, 544, 1209
BmcAI AGTACT 1 cut(s) 994
Bme1390I CCNGG 2 cut(s) 112, 373
Bme18I GGWCC 2 cut(s) 369, 1162
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 369, 732, 1162
BmiI GGNNCC 1 cut(s) 1233
BmrFI CCNGG 2 cut(s) 112, 373
BmrI ACTGGG 1 cut(s) 519
BmuI ACTGGG 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 473
Bpu14I TTCGAA 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 373
BsaBI GATNNNNATC 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 845
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 432, 1242
Bse1I ACTGG 2 cut(s) 525, 1091
Bse3DI GCAATG 2 cut(s) 412, 885
Bse8I GATNNNNATC 1 cut(s) 297
BseAI TCCGGA 1 cut(s) 845
BseBI CCWGG 1 cut(s) 112
BseGI GGATG 2 cut(s) 325, 640
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 432, 1242
BseMI GCAATG 2 cut(s) 412, 885
BseMII CTCAG 1 cut(s) 1213
BseNI ACTGG 2 cut(s) 525, 1091
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 4 cut(s) 54, 155, 529, 1219
BsgI GTGCAG 2 cut(s) 591, 1197
BshFI GGCC 1 cut(s) 733
BsiSI CCGG 2 cut(s) 372, 846
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 432, 1242
BsmAI GTCTC 2 cut(s) 160, 902
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 1 cut(s) 733
Bsp119I TTCGAA 1 cut(s) 164
Bsp13I TCCGGA 1 cut(s) 845
Bsp143I GATC 7 cut(s) 107, 123, 298, 375, 562, 882, 1087
BspACI CCGC 2 cut(s) 335, 880
BspANI GGCC 1 cut(s) 733
BspCNI CTCAG 1 cut(s) 1212
BspEI TCCGGA 1 cut(s) 845
BspLI GGNNCC 1 cut(s) 1233
BspMI ACCTGC 1 cut(s) 1233
BspPI GGATC 4 cut(s) 102, 383, 890, 1082
BspT104I TTCGAA 1 cut(s) 164
BsrBI CCGCTC 1 cut(s) 880
BsrDI GCAATG 2 cut(s) 412, 885
BsrI ACTGG 2 cut(s) 525, 1091
BssMI GATC 7 cut(s) 107, 123, 298, 375, 562, 882, 1087
BssSI CACGAG 2 cut(s) 609, 1226
Bst2BI CACGAG 2 cut(s) 609, 1226
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 3 cut(s) 479, 745, 758
Bst6I CTCTTC 2 cut(s) 511, 1124
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 1199
BstF5I GGATG 2 cut(s) 325, 640
BstKTI GATC 7 cut(s) 110, 126, 301, 378, 565, 885, 1090
BstMAI GTCTC 2 cut(s) 160, 902
BstMBI GATC 7 cut(s) 107, 123, 298, 375, 562, 882, 1087
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 2 cut(s) 119, 399
BstSCI CCNGG 2 cut(s) 110, 371
BstSFI CTRYAG 2 cut(s) 537, 546
BstV1I GCAGC 4 cut(s) 54, 155, 529, 1219
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 967
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 325, 640
BtsI GCAGTG 3 cut(s) 400, 910, 993
BtsIMutI CAGTG 5 cut(s) 228, 400, 532, 910, 993
BveI ACCTGC 1 cut(s) 1233
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 545
Cfr13I GGNCC 3 cut(s) 369, 732, 1162
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 720, 993
CviAII CATG 6 cut(s) 116, 272, 329, 396, 785, 917
CviQI GTAC 2 cut(s) 720, 993
DdeI CTNAG 1 cut(s) 1199
DpnI GATC 7 cut(s) 109, 125, 300, 377, 564, 884, 1089
DpnII GATC 7 cut(s) 107, 123, 298, 375, 562, 882, 1087
Eam1104I CTCTTC 2 cut(s) 511, 1124
EarI CTCTTC 2 cut(s) 511, 1124
Eco47I GGWCC 2 cut(s) 369, 1162
Eco57I CTGAAG 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 6 cut(s) 119, 275, 332, 399, 788, 920
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FaqI GGGAC 1 cut(s) 374
FatI CATG 6 cut(s) 115, 271, 328, 395, 784, 916
FauNDI CATATG 2 cut(s) 365, 1028
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 68, 144, 543, 1208
FokI GGATG 2 cut(s) 332, 627
Fsp4HI GCNGC 4 cut(s) 68, 144, 543, 1208
FspBI CTAG 1 cut(s) 996
GluI GCNGC 4 cut(s) 68, 144, 543, 1208
HaeIII GGCC 1 cut(s) 733
HapII CCGG 2 cut(s) 372, 846
HgaI GACGC 1 cut(s) 88
Hin1II CATG 6 cut(s) 119, 275, 332, 399, 788, 920
HinfI GANTC 5 cut(s) 54, 411, 737, 977, 1181
HpaII CCGG 2 cut(s) 372, 846
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 782, 1099
Hpy188I TCNGA 2 cut(s) 574, 1009
Hpy188III TCNNGA 5 cut(s) 218, 694, 707, 846, 1226
Hpy8I GTNNAC 2 cut(s) 782, 1099
HpyAV CCTTC 2 cut(s) 40, 790
HpyCH4III ACNGT 3 cut(s) 479, 745, 758
HpyCH4IV ACGT 2 cut(s) 153, 208
HpyCH4V TGCA 7 cut(s) 395, 405, 453, 608, 750, 890, 1178
HpyF3I CTNAG 1 cut(s) 1199
HpySE526I ACGT 2 cut(s) 153, 208
Hsp92II CATG 6 cut(s) 119, 275, 332, 399, 788, 920
Kpn2I TCCGGA 1 cut(s) 845
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 7 cut(s) 107, 123, 298, 375, 562, 882, 1087
Lsp1109I GCAGC 4 cut(s) 54, 155, 529, 1219
MaeI CTAG 1 cut(s) 996
MaeII ACGT 2 cut(s) 153, 208
MaeIII GTNAC 2 cut(s) 398, 670
MalI GATC 7 cut(s) 109, 125, 300, 377, 564, 884, 1089
MbiI CCGCTC 1 cut(s) 880
MboI GATC 7 cut(s) 107, 123, 298, 375, 562, 882, 1087
MboII GAAGA 5 cut(s) 473, 498, 587, 800, 1141
MflI RGATCY 1 cut(s) 107
MlyI GAGTC 2 cut(s) 971, 1175
MroI TCCGGA 1 cut(s) 845
MseI TTAA 7 cut(s) 306, 314, 422, 465, 618, 1056, 1193
MslI CAYNNNNRTG 3 cut(s) 405, 986, 1031
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 2 cut(s) 372, 846
MspR9I CCNGG 2 cut(s) 112, 373
MvaI CCWGG 1 cut(s) 112
NciI CCSGG 1 cut(s) 373
NdeI CATATG 2 cut(s) 365, 1028
NdeII GATC 7 cut(s) 107, 123, 298, 375, 562, 882, 1087
NlaIII CATG 6 cut(s) 119, 275, 332, 399, 788, 920
NlaIV GGNNCC 1 cut(s) 1233
NmuCI GTSAC 1 cut(s) 398
NspI RCATGY 2 cut(s) 119, 399
NspV TTCGAA 1 cut(s) 164
PaeI GCATGC 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 1233
PfeI GAWTC 3 cut(s) 54, 411, 737
PkrI GCNGC 4 cut(s) 69, 145, 544, 1209
PleI GAGTC 2 cut(s) 971, 1175
PpsI GAGTC 2 cut(s) 971, 1175
Psp1406I AACGTT 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 1233
PspPI GGNCC 3 cut(s) 369, 732, 1162
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 2 cut(s) 721, 994
RsaNI GTAC 2 cut(s) 720, 993
RseI CAYNNNNRTG 3 cut(s) 405, 986, 1031
SaqAI TTAA 7 cut(s) 306, 314, 422, 465, 618, 1056, 1193
SatI GCNGC 4 cut(s) 68, 144, 543, 1208
Sau3AI GATC 7 cut(s) 107, 123, 298, 375, 562, 882, 1087
Sau96I GGNCC 3 cut(s) 369, 732, 1162
ScaI AGTACT 1 cut(s) 994
SchI GAGTC 2 cut(s) 971, 1175
ScrFI CCNGG 2 cut(s) 112, 373
SfcI CTRYAG 2 cut(s) 537, 546
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 2 cut(s) 369, 1162
SmiMI CAYNNNNRTG 3 cut(s) 405, 986, 1031
SpeI ACTAGT 1 cut(s) 995
SphI GCATGC 1 cut(s) 119
SsiI CCGC 2 cut(s) 335, 880
SspI AATATT 2 cut(s) 727, 803
SspMI CTAG 1 cut(s) 996
StyD4I CCNGG 2 cut(s) 110, 371
TaaI ACNGT 3 cut(s) 479, 745, 758
TaiI ACGT 2 cut(s) 156, 211
TaqI TCGA 3 cut(s) 164, 378, 867
TatI WGTACW 2 cut(s) 719, 992
TfiI GAWTC 3 cut(s) 54, 411, 737
Tru1I TTAA 7 cut(s) 306, 314, 422, 465, 618, 1056, 1193
Tru9I TTAA 7 cut(s) 306, 314, 422, 465, 618, 1056, 1193
TscAI CASTG 5 cut(s) 235, 407, 532, 910, 993
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 4 cut(s) 67, 143, 542, 1207
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 5 cut(s) 59, 729, 801, 867, 905
TspGWI ACGGA 2 cut(s) 148, 1175
TspRI CASTG 5 cut(s) 235, 407, 532, 910, 993
VpaK11BI GGWCC 2 cut(s) 369, 1162
XapI RAATTY 3 cut(s) 470, 594, 1106
XceI RCATGY 2 cut(s) 119, 399
XspI CTAG 1 cut(s) 996
ZrmI AGTACT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.