Rroxscaffold_6G00421020

Cyclic phosphodiesterase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
42221536 .. 42224931
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421020.1

Sequence Viewer

Length: 1494 bp
ATGAGAGAGGTTGGCGGTGAATCCGAAGATGTGGTGGAGCAAATCCTATCAATTCTGCCACCCAAAACTCTGATGCGATTCAAGTGTGTCTCTAAAAGGTGGTACGCTCTGATCACTAGTCCCAGGTTAGTTGCCAAGCACCTCTACAATTCCATGCACAACAATCTCTCCACTAGTGTTCTTATGAAACGTGAAGTCCATAAGGACACCAACACTGACGAGACTGAAGAGTTGTTCTCATTCCTTCATTTTCGAAATGTTGAAGATAATGATGTTGATGGCGTGCATGAGGAGCATAGTGTTCTTTCTAGTATCCAGGAATTCCATATTCCGTTTCCTACAGGTGTAAAGACTCCGAACGAATCGCTTATAATTATAGGCCACTGTAACGGGATCATTTGTCTAGCTCAAGCAGTATCTGGTGAGGTGATTTTATGTAACCCAGCAATTCATGAATATAAGCTTCTTCCACCCTCTCCACACCTTCCAGATTCCGATTGGCCATGTAGCCCCTTATTCCGGTTCAGAGATGGTTTAGGATTTGGACACGATCCGAACTTTAACGAATATAAAGTTATTAACATTGGATTTCCTGCTCCAGGATTATCACCTGATGGATTTAACATTTATAATCCTCCCAAAGCAGCTGTCTACACCCTTGGTACTGATTCTTGGAGAGAGATAAGGACTGATTCGTTAGAAACAGAAACTACTATTCTTTGGCCCGAACAATTCCAGATGCACTTCAAGGATATGTGTTTTTGGCGGGGACATGAGCAACATAAGGAATTGGATGTGTCTGATGCCGGCAAGGAGGAATTCATTAGGGACGTTATCATTATGTTTGATACTGGGGATGAGCTGTTTCATGGTATAATCTTACCGGATGAATTTGATTATCCATTAAAGAATTATTTTGGTGGGCACCTTTTAGTGTGGAAGGATTCCGTTGCTCTTTTGGGAAGACAATTTCGTGAACTATCCTTTGGAATATGGGTGATGGATGAATTTGGTGGTCCTAAAGGTGGTGCTTGGACAAAATACATAAGTTTTGAGCTCCCTGTGGAACCGTTAATATTTTGGAAGAGCAAGGAGGTTCTTTTGAATTATTATAACGGGACTAATTATAGCGGACTTATATTCTCTTATAATCTCGGTACCAAAAAGCTTAAAAATCTTCCCATTCAAAGCAAGCGGACTGACTCTACTGCTGTTGTGCATGTGAACAGCATAGTTTCAGTCTTGGGAGGCAACAAACTCAACAGCAAAGATAATTCTACACTCAATGCCGATTTTTCTGTATTCAAGTACTCTTCTCCACCAATCAGTCATTATATGGTTGACAAGAAAACTTACTCATATTCGGTGTGGGCAATCCCATCAGATGATGTGTCTCTTAGGATTAAGAAAGTGATGGAGGGATTGCGGACCGAATTCGGCGGACCACAGATCGATCCTCACATTGCCGTCGTGGGGTCCATTTGTATGAAGTGA

Protein Analysis

497

Amino Acids

56.42

Weight (kDa)

5.69

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 43 4.3e-09 F-box domain
F-box-like PF12937 10 - 43 2.3e-06 F-box-like
FBA_3 PF08268 102 - 396 2.1e-10 F-box associated beta propeller domain
FBA_1 PF07734 120 - 413 7.7e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 371, 630, 1113, 1149
Acc65I GGTACC 1 cut(s) 1157
AccB1I GGYRCC 2 cut(s) 924, 1157
AccI GTMKAC 1 cut(s) 651
AciI CCGC 6 cut(s) 15, 766, 1131, 1195, 1426, 1440
AclWI GGATC 3 cut(s) 401, 545, 1448
AcoI YGGCCR 1 cut(s) 500
AcsI RAATTY 5 cut(s) 320, 818, 890, 1007, 1433
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 4 cut(s) 104, 664, 1159, 1310
AfiI CCNNNNNNNGG 4 cut(s) 519, 599, 1025, 1473
AgsI TTSAA 6 cut(s) 82, 263, 748, 1105, 1187, 1306
AhlI ACTAGT 2 cut(s) 116, 173
AjnI CCWGG 3 cut(s) 122, 315, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 969, 1001
AluBI AGCT 6 cut(s) 407, 463, 647, 862, 1057, 1168
AluI AGCT 6 cut(s) 407, 463, 647, 862, 1057, 1168
Alw21I GWGCWC 1 cut(s) 1059
Alw26I GTCTC 3 cut(s) 94, 215, 1398
AlwI GGATC 3 cut(s) 401, 545, 1448
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 3 cut(s) 379, 500, 722
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 5 cut(s) 320, 818, 890, 1007, 1433
ArsI GACNNNNNNTTYG 2 cut(s) 633, 665
Asp718I GGTACC 1 cut(s) 1157
AspS9I GGNCC 5 cut(s) 723, 1016, 1428, 1442, 1476
AsuHPI GGTGA 5 cut(s) 29, 434, 439, 600, 1009
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 4 cut(s) 1016, 1428, 1442, 1476
BaeGI GKGCMC 1 cut(s) 927
BalI TGGCCA 1 cut(s) 502
BanI GGYRCC 2 cut(s) 924, 1157
BanII GRGCYC 1 cut(s) 1059
BbsI GAAGAC 1 cut(s) 970
Bbv12I GWGCWC 1 cut(s) 1059
BbvI GCAGC 1 cut(s) 656
BccI CCATC 6 cut(s) 272, 524, 608, 994, 1387, 1408
BceAI ACGGC 1 cut(s) 1451
BciT130I CCWGG 3 cut(s) 124, 317, 600
BciVI GTATCC 1 cut(s) 323
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 94, 215, 1398
BcuI ACTAGT 2 cut(s) 116, 173
BfaI CTAG 4 cut(s) 117, 174, 309, 404
BfmI CTRYAG 1 cut(s) 339
BfuI GTATCC 1 cut(s) 323
BisI GCNGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 646
BmcAI AGTACT 1 cut(s) 1310
Bme1390I CCNGG 3 cut(s) 124, 317, 600
Bme18I GGWCC 4 cut(s) 1016, 1428, 1442, 1476
BmgT120I GGNCC 5 cut(s) 723, 1016, 1428, 1442, 1476
BmiI GGNNCC 4 cut(s) 926, 1068, 1159, 1477
BmrFI CCNGG 3 cut(s) 124, 317, 600
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 3 cut(s) 63, 729, 793
BmuI ACTGGG 1 cut(s) 861
BpiI GAAGAC 1 cut(s) 970
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 393
Bsa29I ATCGAT 1 cut(s) 1452
BsaJI CCNNGG 2 cut(s) 122, 658
BsaWI WCCGGW 2 cut(s) 519, 883
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 519, 599, 1025, 1473
Bse118I RCCGGY 1 cut(s) 806
Bse1I ACTGG 1 cut(s) 856
Bse3DI GCAATG 1 cut(s) 1461
BseBI CCWGG 3 cut(s) 124, 317, 600
BseCI ATCGAT 1 cut(s) 1452
BseDI CCNNGG 2 cut(s) 122, 658
BseGI GGATG 4 cut(s) 799, 862, 892, 1009
BseLI CCNNNNNNNGG 4 cut(s) 519, 599, 1025, 1473
BseMI GCAATG 1 cut(s) 1461
BseNI ACTGG 1 cut(s) 856
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 927
BseXI GCAGC 1 cut(s) 656
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 3 cut(s) 381, 502, 724
BshNI GGYRCC 2 cut(s) 924, 1157
BshVI ATCGAT 1 cut(s) 1452
BsiHKAI GWGCWC 1 cut(s) 1059
BsiSI CCGG 3 cut(s) 520, 807, 884
BslFI GGGAC 4 cut(s) 105, 783, 842, 1132
BslI CCNNNNNNNGG 4 cut(s) 519, 599, 1025, 1473
BsmAI GTCTC 3 cut(s) 94, 215, 1398
BsmFI GGGAC 4 cut(s) 105, 783, 842, 1132
BsnI GGCC 3 cut(s) 381, 502, 724
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 927, 1059
Bsp143I GATC 5 cut(s) 111, 393, 550, 1449, 1453
BspACI CCGC 6 cut(s) 15, 766, 1131, 1195, 1426, 1440
BspANI GGCC 3 cut(s) 381, 502, 724
BspDI ATCGAT 1 cut(s) 1452
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 4 cut(s) 926, 1068, 1159, 1477
BspPI GGATC 3 cut(s) 401, 545, 1448
BspQI GCTCTTC 1 cut(s) 1079
BspT104I TTCGAA 1 cut(s) 253
BspT107I GGYRCC 2 cut(s) 924, 1157
BsrDI GCAATG 1 cut(s) 1461
BsrFI RCCGGY 1 cut(s) 806
BsrI ACTGG 1 cut(s) 856
BssAI RCCGGY 1 cut(s) 806
BssECI CCNNGG 2 cut(s) 122, 658
BssMI GATC 5 cut(s) 111, 393, 550, 1449, 1453
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 3 cut(s) 124, 317, 600
Bst4CI ACNGT 2 cut(s) 386, 1071
Bst6I CTCTTC 3 cut(s) 222, 1079, 1318
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 3 cut(s) 284, 808, 1193
BstDEI CTNAG 1 cut(s) 1397
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 4 cut(s) 799, 862, 892, 1009
BstKTI GATC 5 cut(s) 114, 396, 553, 1452, 1456
BstMAI GTCTC 3 cut(s) 94, 215, 1398
BstMBI GATC 5 cut(s) 111, 393, 550, 1449, 1453
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNI CCWGG 3 cut(s) 124, 317, 600
BstNSI RCATGY 1 cut(s) 1223
BstSCI CCNGG 3 cut(s) 122, 315, 598
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 927
BstV1I GCAGC 1 cut(s) 656
BstV2I GAAGAC 1 cut(s) 970
Bsu15I ATCGAT 1 cut(s) 1452
BsuI GTATCC 1 cut(s) 323
BsuRI GGCC 3 cut(s) 381, 502, 724
BsuTUI ATCGAT 1 cut(s) 1452
BtsCI GGATG 4 cut(s) 799, 862, 892, 1009
BtsIMutI CAGTG 2 cut(s) 213, 382
Cac8I GCNNGC 3 cut(s) 284, 808, 1193
CaiI CAGNNNCTG 1 cut(s) 419
CciI TCATGA 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 806
Cfr13I GGNCC 5 cut(s) 723, 1016, 1428, 1442, 1476
ClaI ATCGAT 1 cut(s) 1452
CpoI CGGWCCG 1 cut(s) 1428
Csp6I GTAC 4 cut(s) 103, 663, 1158, 1309
CspI CGGWCCG 1 cut(s) 1428
CviAII CATG 7 cut(s) 154, 287, 452, 504, 773, 869, 1220
CviQI GTAC 4 cut(s) 103, 663, 1158, 1309
DdeI CTNAG 1 cut(s) 1397
DpnI GATC 5 cut(s) 113, 395, 552, 1451, 1455
DpnII GATC 5 cut(s) 111, 393, 550, 1449, 1453
EaeI YGGCCR 1 cut(s) 500
Eam1104I CTCTTC 3 cut(s) 222, 1079, 1318
EarI CTCTTC 3 cut(s) 222, 1079, 1318
EciI GGCGGA 1 cut(s) 1455
Ecl136II GAGCTC 1 cut(s) 1057
Eco130I CCWWGG 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 1059
Eco47I GGWCC 4 cut(s) 1016, 1428, 1442, 1476
Eco53kI GAGCTC 1 cut(s) 1057
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 1057
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoRI GAATTC 3 cut(s) 320, 818, 1433
EcoRII CCWGG 3 cut(s) 122, 315, 598
EcoT14I CCWWGG 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 1059
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 7 cut(s) 157, 290, 455, 507, 776, 872, 1223
FaqI GGGAC 4 cut(s) 105, 783, 842, 1132
FatI CATG 7 cut(s) 153, 286, 451, 503, 772, 868, 1219
FauI CCCGC 1 cut(s) 759
FbaI TGATCA 1 cut(s) 111
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 4 cut(s) 806, 869, 899, 1016
FriOI GRGCYC 1 cut(s) 1059
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 4 cut(s) 117, 174, 309, 404
GluI GCNGC 1 cut(s) 645
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 3 cut(s) 381, 502, 724
HapII CCGG 3 cut(s) 520, 807, 884
Hin1II CATG 7 cut(s) 157, 290, 455, 507, 776, 872, 1223
HincII GTYRAC 1 cut(s) 1342
HindII GTYRAC 1 cut(s) 1342
HindIII AAGCTT 2 cut(s) 461, 1166
HinfI GANTC 9 cut(s) 20, 78, 352, 362, 491, 668, 692, 944, 1202
HpaII CCGG 3 cut(s) 520, 807, 884
HphI GGTGA 5 cut(s) 29, 434, 439, 600, 1009
Hpy166II GTNNAC 4 cut(s) 652, 977, 1225, 1342
Hpy188I TCNGA 9 cut(s) 25, 72, 111, 357, 496, 527, 555, 802, 1384
Hpy188III TCNNGA 4 cut(s) 452, 488, 736, 974
Hpy8I GTNNAC 4 cut(s) 652, 977, 1225, 1342
Hpy99I CGWCG 1 cut(s) 1472
HpyAV CCTTC 3 cut(s) 254, 494, 934
HpyCH4III ACNGT 2 cut(s) 386, 1071
HpyCH4IV ACGT 2 cut(s) 190, 831
HpyCH4V TGCA 4 cut(s) 157, 286, 742, 1219
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 1397
HpySE526I ACGT 2 cut(s) 190, 831
Hsp92II CATG 7 cut(s) 157, 290, 455, 507, 776, 872, 1223
KpnI GGTACC 1 cut(s) 1161
KroI GCCGGC 1 cut(s) 806
KroNI GCCGGC 1 cut(s) 808
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 5 cut(s) 111, 393, 550, 1449, 1453
LguI GCTCTTC 1 cut(s) 1079
LmnI GCTCC 4 cut(s) 37, 292, 601, 1062
Lsp1109I GCAGC 1 cut(s) 656
LweI GCATC 3 cut(s) 63, 729, 793
MaeI CTAG 4 cut(s) 117, 174, 309, 404
MaeII ACGT 2 cut(s) 190, 831
MaeIII GTNAC 2 cut(s) 386, 437
MalI GATC 5 cut(s) 113, 395, 552, 1451, 1455
MboI GATC 5 cut(s) 111, 393, 550, 1449, 1453
MboII GAAGA 8 cut(s) 38, 239, 275, 458, 975, 1096, 1169, 1305
MhlI GDGCHC 2 cut(s) 927, 1059
MlsI TGGCCA 1 cut(s) 502
MluNI TGGCCA 1 cut(s) 502
MlyI GAGTC 2 cut(s) 346, 1196
Mox20I TGGCCA 1 cut(s) 502
MroNI GCCGGC 1 cut(s) 806
MscI TGGCCA 1 cut(s) 502
MseI TTAA 7 cut(s) 561, 579, 621, 905, 1073, 1170, 1404
MslI CAYNNNNRTG 1 cut(s) 1484
Msp20I TGGCCA 1 cut(s) 502
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 3 cut(s) 520, 807, 884
MspR9I CCNGG 3 cut(s) 124, 317, 600
MvaI CCWGG 3 cut(s) 124, 317, 600
MwoI GCNNNNNNNGC 1 cut(s) 292
NaeI GCCGGC 1 cut(s) 808
NdeII GATC 5 cut(s) 111, 393, 550, 1449, 1453
NgoMIV GCCGGC 1 cut(s) 806
NlaIII CATG 7 cut(s) 157, 290, 455, 507, 776, 872, 1223
NlaIV GGNNCC 4 cut(s) 926, 1068, 1159, 1477
NspI RCATGY 1 cut(s) 1223
NspV TTCGAA 1 cut(s) 253
PagI TCATGA 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 1079
PdiI GCCGGC 1 cut(s) 808
PfeI GAWTC 7 cut(s) 20, 78, 362, 491, 668, 692, 944
PfoI TCCNGGA 2 cut(s) 315, 598
PkrI GCNGC 1 cut(s) 646
PleI GAGTC 2 cut(s) 346, 1196
PpsI GAGTC 2 cut(s) 346, 1196
PsiI TTATAA 4 cut(s) 371, 630, 1113, 1149
Psp124BI GAGCTC 1 cut(s) 1059
Psp6I CCWGG 3 cut(s) 122, 315, 598
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 3 cut(s) 122, 315, 598
PspN4I GGNNCC 4 cut(s) 926, 1068, 1159, 1477
PspPI GGNCC 5 cut(s) 723, 1016, 1428, 1442, 1476
PstNI CAGNNNCTG 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 4 cut(s) 104, 664, 1159, 1310
RsaNI GTAC 4 cut(s) 103, 663, 1158, 1309
RseI CAYNNNNRTG 1 cut(s) 1484
Rsr2I CGGWCCG 1 cut(s) 1428
RsrII CGGWCCG 1 cut(s) 1428
SacI GAGCTC 1 cut(s) 1059
SapI GCTCTTC 1 cut(s) 1079
SaqAI TTAA 7 cut(s) 561, 579, 621, 905, 1073, 1170, 1404
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 5 cut(s) 111, 393, 550, 1449, 1453
Sau96I GGNCC 5 cut(s) 723, 1016, 1428, 1442, 1476
ScaI AGTACT 1 cut(s) 1310
SchI GAGTC 2 cut(s) 346, 1196
ScrFI CCNGG 3 cut(s) 124, 317, 600
SduI GDGCHC 2 cut(s) 927, 1059
SfaNI GCATC 3 cut(s) 63, 729, 793
SfcI CTRYAG 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 4 cut(s) 1016, 1428, 1442, 1476
SmiMI CAYNNNNRTG 1 cut(s) 1484
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
SpeI ACTAGT 2 cut(s) 116, 173
SsiI CCGC 6 cut(s) 15, 766, 1131, 1195, 1426, 1440
SspI AATATT 1 cut(s) 1077
SspMI CTAG 4 cut(s) 117, 174, 309, 404
SstI GAGCTC 1 cut(s) 1059
StyD4I CCNGG 3 cut(s) 122, 315, 598
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 2 cut(s) 386, 1071
TaiI ACGT 2 cut(s) 193, 834
TaqI TCGA 2 cut(s) 253, 1452
TaqII GACCGA 1 cut(s) 1445
TatI WGTACW 1 cut(s) 1308
TfiI GAWTC 7 cut(s) 20, 78, 362, 491, 668, 692, 944
Tru1I TTAA 7 cut(s) 561, 579, 621, 905, 1073, 1170, 1404
Tru9I TTAA 7 cut(s) 561, 579, 621, 905, 1073, 1170, 1404
TscAI CASTG 2 cut(s) 220, 389
TseI GCWGC 1 cut(s) 644
TspDTI ATGAA 8 cut(s) 200, 236, 440, 468, 811, 857, 903, 1020
TspGWI ACGGA 2 cut(s) 321, 937
TspRI CASTG 2 cut(s) 220, 389
VpaK11BI GGWCC 4 cut(s) 1016, 1428, 1442, 1476
XagI CCTNNNNNAGG 1 cut(s) 597
XapI RAATTY 5 cut(s) 320, 818, 890, 1007, 1433
XceI RCATGY 1 cut(s) 1223
XcmI CCANNNNNNNNNTGG 1 cut(s) 495
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 4 cut(s) 117, 174, 309, 404
ZrmI AGTACT 1 cut(s) 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.