RchiOBHm_Chr3g0456131

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000046
Physical Location & Seq
Reverse (-)
5734183 .. 5735463
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42300

Sequence Viewer

Length: 1281 bp
ATGGCTGAGCTAATTTGCAAAATGCCGGAAGAGATGACATTGCAATTTCTTTCGAGGCTGCCTCCCAAATCTCTGATGCGATTCAAGTGCATCCATAAGTCATGGTATGCTTTGATCAATAATCCCAAGTTCATAGACAAGCACCTCCACTTGTACAACAAAGACTCCTACACTTGCTTCCTTCTCAAGCGCTCCGTGGTTGCAAGAACCCAAAGTATCAAAGAGGAGATCTTATTTTCATTCCTTTATGTTCCGAATGACAATGATGATGAAGACAGTCATCCTCATTGTGTTGTGGAGGACATCTATTTTCCGACTGCTATGGGTCTAAAGACTAAGGGGCACAATATTGAGCTCCCTGGGTCATACGGTGGTGAAACTATATACATTTTAGGTCATTGTGATGGGATCATTTGTCTAGTTTATCATAGCGGAGGCCTTGTGTTCTACAACCCATCGATACGAGAATTCAAGATTATTCCCCCTTCATGTCTTACCGAGTCATTCTCTTGTGTTGGGGGATTTGGATATGATCCAAAATGTAAGGATTACAAGGTGGTTAATATTGTACCATCAGGTGAAGATTCATATGATCATAACCAGCGTCTGGTTATTTATCCTCCAAGGGCAGAAGTATACACTTTGAGTACTGATTCTTGGAGGCAAATCAAGATTGATTATTTAGAAACAGAAACTACTAGCTTTTGGCCTGACATTTATCAGATGTGCTACAAGGGAGTTTTTTATTGGTTGGGTCATGAACAAGATAAGGAATACCTCTGTTATTATGACAGGCTTTCGTCGCCAAGCATTAGGGATGTAATCCTTTTGTATGACACTGGTGAAGAGGTATTTCGTACTAGACTACTTCCGGATAGTTTCAAGGACCTAGGATTGCATGCTTTATCTATGAGTCTAACAATGTGGAATGGATCTATTGCTCTTTTTGGCTTTTCTTATTGGGGTCCGGATATTGAGTCCTTCAAAATATGGATGATGGATGACTTTGGCAGTTGGACAAAACACTTGACCTATGAGACCATAATGGGAATTTATTTGTCATTGGTGTTATGGAGAAGTGATGACGTTCTTATGGTTGCCAATGACGGACGTATAGTCTCCTATAGTCTAAGTAGAGATAGGGTTAAGTATTTTCCAATTCAAGGTGTTTGGGGAACTTATCAAGCTTTCGTTTGTGTGAATTCGAATAGTATTGTTTCAGTCAAGGGAGGCAACAAGGTTGAGAGCAGAGATATACAAACTAGTAATGTCCTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

426

Amino Acids

49.23

Weight (kDa)

5.66

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 45 3.5e-07 F-box domain
F-box-like PF12937 5 - 49 5.7e-06 F-box-like
FBA_3 PF08268 111 - 344 3.1e-18 F-box associated beta propeller domain
FBA_1 PF07734 123 - 371 5.4e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 607
AccI GTMKAC 1 cut(s) 636
AccIII TCCGGA 2 cut(s) 871, 967
AciI CCGC 1 cut(s) 432
AclWI GGATC 3 cut(s) 416, 527, 940
AcsI RAATTY 3 cut(s) 467, 1050, 1201
AfaI GTAC 4 cut(s) 155, 570, 649, 859
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 607, 1163
AgsI TTSAA 5 cut(s) 85, 472, 883, 985, 1163
AhdI GACNNNNNGTC 1 cut(s) 1115
AhlI ACTAGT 1 cut(s) 1262
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 4 cut(s) 10, 355, 702, 1187
AluI AGCT 4 cut(s) 10, 355, 702, 1187
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 1031, 1123
AlwI GGATC 3 cut(s) 416, 527, 940
AlwNI CAGNNNCTG 1 cut(s) 607
Aor13HI TCCGGA 2 cut(s) 871, 967
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 436, 707
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 3 cut(s) 467, 1050, 1201
AspA2I CCTAGG 1 cut(s) 889
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 886, 965
AsuHPI GGTGA 3 cut(s) 386, 590, 854
AsuII TTCGAA 1 cut(s) 1205
AvaII GGWCC 2 cut(s) 886, 965
AvrII CCTAGG 1 cut(s) 889
BaeGI GKGCMC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 45
BccI CCATC 4 cut(s) 398, 463, 580, 991
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 360
BclI TGATCA 2 cut(s) 114, 592
BcoDI GTCTC 2 cut(s) 1031, 1123
BcuI ACTAGT 1 cut(s) 1262
BfaI CTAG 5 cut(s) 419, 699, 861, 890, 1263
BfmI CTRYAG 1 cut(s) 1123
BfoI RGCGCY 1 cut(s) 193
BglII AGATCT 1 cut(s) 228
BisI GCNGC 1 cut(s) 59
BlnI CCTAGG 1 cut(s) 889
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 60
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 2 cut(s) 886, 965
BmeRI GACNNNNNGTC 1 cut(s) 1115
BmgT120I GGNCC 2 cut(s) 886, 965
BmiI GGNNCC 1 cut(s) 966
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 66, 99
BpiI GAAGAC 1 cut(s) 279
BplI GAGNNNNNCTC 4 cut(s) 46, 78, 491, 523
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 1205
BpuEI CTTGAG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 458
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 5 cut(s) 195, 358, 359, 623, 889
BsaWI WCCGGW 2 cut(s) 871, 967
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 426, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 607, 1163
Bse1I ACTGG 1 cut(s) 844
Bse3DI GCAATG 1 cut(s) 38
BseAI TCCGGA 2 cut(s) 871, 967
BseBI CCWGG 1 cut(s) 360
BseCI ATCGAT 1 cut(s) 458
BseDI CCNNGG 5 cut(s) 195, 358, 359, 623, 889
BseGI GGATG 5 cut(s) 90, 280, 823, 999, 1006
BseLI CCNNNNNNNGG 2 cut(s) 607, 1163
BseMI GCAATG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 844
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 2 cut(s) 438, 709
BshVI ATCGAT 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 3 cut(s) 26, 872, 968
BslI CCNNNNNNNGG 2 cut(s) 607, 1163
BsmAI GTCTC 2 cut(s) 1031, 1123
BsnI GGCC 2 cut(s) 438, 709
Bso31I GGTCTC 1 cut(s) 1031
Bsp119I TTCGAA 1 cut(s) 1205
Bsp1286I GDGCHC 2 cut(s) 345, 357
Bsp13I TCCGGA 2 cut(s) 871, 967
Bsp1407I TGTACA 1 cut(s) 153
Bsp143I GATC 6 cut(s) 114, 228, 408, 532, 592, 932
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 432
BspANI GGCC 2 cut(s) 438, 709
BspDI ATCGAT 1 cut(s) 458
BspEI TCCGGA 2 cut(s) 871, 967
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 1 cut(s) 966
BspPI GGATC 3 cut(s) 416, 527, 940
BspT104I TTCGAA 1 cut(s) 1205
BspTNI GGTCTC 1 cut(s) 1031
BsrDI GCAATG 1 cut(s) 38
BsrGI TGTACA 1 cut(s) 153
BsrI ACTGG 1 cut(s) 844
BssECI CCNNGG 5 cut(s) 195, 358, 359, 623, 889
BssMI GATC 6 cut(s) 114, 228, 408, 532, 592, 932
BssNAI GTATAC 1 cut(s) 637
BssT1I CCWWGG 2 cut(s) 623, 889
Bst1107I GTATAC 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 278, 371
Bst6I CTCTTC 2 cut(s) 24, 840
BstAUI TGTACA 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 1205
BstC8I GCNNGC 1 cut(s) 900
BstDEI CTNAG 3 cut(s) 6, 336, 1130
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 5 cut(s) 90, 280, 823, 999, 1006
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 6 cut(s) 117, 231, 411, 535, 595, 935
BstMAI GTCTC 2 cut(s) 1031, 1123
BstMBI GATC 6 cut(s) 114, 228, 408, 532, 592, 932
BstMWI GCNNNNNNNGC 1 cut(s) 802
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 1123
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 228, 932
BstYI RGATCY 2 cut(s) 228, 932
BstZ17I GTATAC 1 cut(s) 637
Bsu15I ATCGAT 1 cut(s) 458
BsuRI GGCC 2 cut(s) 438, 709
BsuTUI ATCGAT 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 5 cut(s) 90, 280, 823, 999, 1006
BtsIMutI CAGTG 1 cut(s) 837
Cac8I GCNNGC 1 cut(s) 900
CaiI CAGNNNCTG 1 cut(s) 607
CciI TCATGA 1 cut(s) 757
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 886, 965
ClaI ATCGAT 1 cut(s) 458
CseI GACGC 1 cut(s) 593
Csp6I GTAC 4 cut(s) 154, 569, 648, 858
CviAII CATG 4 cut(s) 102, 489, 758, 899
CviQI GTAC 4 cut(s) 154, 569, 648, 858
DdeI CTNAG 3 cut(s) 6, 336, 1130
DpnI GATC 6 cut(s) 116, 230, 410, 534, 594, 934
DpnII GATC 6 cut(s) 114, 228, 408, 532, 592, 932
DriI GACNNNNNGTC 1 cut(s) 1115
Eam1104I CTCTTC 2 cut(s) 24, 840
Eam1105I GACNNNNNGTC 1 cut(s) 1115
EarI CTCTTC 2 cut(s) 24, 840
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 2 cut(s) 623, 889
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 1031
Eco47I GGWCC 2 cut(s) 886, 965
Eco47III AGCGCT 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 886
EcoRI GAATTC 2 cut(s) 467, 1201
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 623, 889
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 2 cut(s) 623, 889
FaeI CATG 4 cut(s) 105, 492, 761, 902
FatI CATG 4 cut(s) 101, 488, 757, 898
FauNDI CATATG 1 cut(s) 589
FbaI TGATCA 2 cut(s) 114, 592
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 5 cut(s) 77, 267, 830, 1006, 1013
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 5 cut(s) 419, 699, 861, 890, 1263
GlaI GCGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 2 cut(s) 438, 709
HapII CCGG 3 cut(s) 26, 872, 968
HgaI GACGC 1 cut(s) 593
HhaI GCGC 1 cut(s) 192
Hin1II CATG 4 cut(s) 105, 492, 761, 902
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 1185
HinfI GANTC 7 cut(s) 81, 164, 500, 584, 653, 913, 977
HpaII CCGG 3 cut(s) 26, 872, 968
HphI GGTGA 3 cut(s) 386, 590, 854
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 4 cut(s) 75, 255, 315, 723
Hpy188III TCNNGA 5 cut(s) 472, 670, 758, 872, 968
Hpy8I GTNNAC 1 cut(s) 637
Hpy99I CGWCG 1 cut(s) 805
HpyAV CCTTC 3 cut(s) 191, 495, 991
HpyCH4III ACNGT 2 cut(s) 278, 371
HpyCH4IV ACGT 2 cut(s) 1086, 1111
HpyCH4V TGCA 5 cut(s) 18, 43, 90, 203, 898
HpyF10VI GCNNNNNNNGC 1 cut(s) 802
HpyF3I CTNAG 3 cut(s) 6, 336, 1130
HpySE526I ACGT 2 cut(s) 1086, 1111
Hsp92II CATG 4 cut(s) 105, 492, 761, 902
HspAI GCGC 1 cut(s) 190
Kpn2I TCCGGA 2 cut(s) 871, 967
Ksp22I TGATCA 2 cut(s) 114, 592
Kzo9I GATC 6 cut(s) 114, 228, 408, 532, 592, 932
LmnI GCTCC 2 cut(s) 197, 360
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 2 cut(s) 66, 99
MaeI CTAG 5 cut(s) 419, 699, 861, 890, 1263
MaeII ACGT 2 cut(s) 1086, 1111
MalI GATC 6 cut(s) 116, 230, 410, 534, 594, 934
MboI GATC 6 cut(s) 114, 228, 408, 532, 592, 932
MboII GAAGA 4 cut(s) 41, 284, 593, 857
MflI RGATCY 2 cut(s) 228, 932
MhlI GDGCHC 2 cut(s) 345, 357
MluCI AATT 6 cut(s) 12, 44, 467, 1050, 1158, 1201
MlyI GAGTC 4 cut(s) 158, 509, 922, 986
MmeI TCCRAC 2 cut(s) 338, 995
MroI TCCGGA 2 cut(s) 871, 967
MseI TTAA 2 cut(s) 561, 1146
MslI CAYNNNNRTG 1 cut(s) 402
MspI CCGG 3 cut(s) 26, 872, 968
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 802
NdeI CATATG 1 cut(s) 589
NdeII GATC 6 cut(s) 114, 228, 408, 532, 592, 932
NlaIII CATG 4 cut(s) 105, 492, 761, 902
NlaIV GGNNCC 1 cut(s) 966
NspI RCATGY 1 cut(s) 902
NspV TTCGAA 1 cut(s) 1205
PaeI GCATGC 1 cut(s) 902
PagI TCATGA 1 cut(s) 757
PasI CCCWGGG 1 cut(s) 359
PceI AGGCCT 1 cut(s) 438
PfeI GAWTC 3 cut(s) 81, 584, 653
PflMI CCANNNNNTGG 1 cut(s) 607
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 4 cut(s) 158, 508, 921, 985
PpsI GAGTC 4 cut(s) 158, 508, 921, 985
PpuMI RGGWCCY 1 cut(s) 886
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 886
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 966
PspPI GGNCC 2 cut(s) 886, 965
PspPPI RGGWCCY 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 607
PsuI RGATCY 2 cut(s) 228, 932
RsaI GTAC 4 cut(s) 155, 570, 649, 859
RsaNI GTAC 4 cut(s) 154, 569, 648, 858
RseI CAYNNNNRTG 1 cut(s) 402
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 561, 1146
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 6 cut(s) 114, 228, 408, 532, 592, 932
Sau96I GGNCC 2 cut(s) 886, 965
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 4 cut(s) 158, 509, 922, 986
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 2 cut(s) 345, 357
SfaNI GCATC 2 cut(s) 66, 99
SfcI CTRYAG 1 cut(s) 1123
SfuI TTCGAA 1 cut(s) 1205
SinI GGWCC 2 cut(s) 886, 965
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 1262
SphI GCATGC 1 cut(s) 902
Sse9I AATT 6 cut(s) 12, 44, 467, 1050, 1158, 1201
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 1 cut(s) 432
SspI AATATT 2 cut(s) 349, 565
SspMI CTAG 5 cut(s) 419, 699, 861, 890, 1263
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 2 cut(s) 623, 889
TaaI ACNGT 2 cut(s) 278, 371
TaiI ACGT 2 cut(s) 1089, 1114
TaqI TCGA 3 cut(s) 53, 458, 1205
TasI AATT 6 cut(s) 12, 44, 467, 1050, 1158, 1201
TatI WGTACW 2 cut(s) 153, 647
TfiI GAWTC 3 cut(s) 81, 584, 653
Tru1I TTAA 2 cut(s) 561, 1146
Tru9I TTAA 2 cut(s) 561, 1146
TscAI CASTG 1 cut(s) 844
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 6 cut(s) 121, 228, 285, 477, 576, 774
TspGWI ACGGA 2 cut(s) 184, 1122
TspRI CASTG 1 cut(s) 844
Van91I CCANNNNNTGG 1 cut(s) 607
VpaK11BI GGWCC 2 cut(s) 886, 965
XapI RAATTY 3 cut(s) 467, 1050, 1201
XceI RCATGY 1 cut(s) 902
XmaJI CCTAGG 1 cut(s) 889
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 5 cut(s) 419, 699, 861, 890, 1263
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.