Cyclic phosphodiesterase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 969 |
| AatII | GACGTC | 1 cut(s) | 357 |
| Acc36I | ACCTGC | 1 cut(s) | 513 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1514 |
| AccII | CGCG | 1 cut(s) | 1380 |
| AccIII | TCCGGA | 1 cut(s) | 694 |
| AciI | CCGC | 5 cut(s) | 347, 653, 932, 1380, 1518 |
| AclWI | GGATC | 6 cut(s) | 94, 422, 545, 635, 708, 728 |
| AcoI | YGGCCR | 4 cut(s) | 1539, 1600, 1674, 1684 |
| AcsI | RAATTY | 4 cut(s) | 281, 1113, 1608, 1823 |
| AcuI | CTGAAG | 1 cut(s) | 389 |
| AcvI | CACGTG | 1 cut(s) | 997 |
| AcyI | GRCGYC | 1 cut(s) | 354 |
| AdeI | CACNNNGTG | 1 cut(s) | 1202 |
| AfaI | GTAC | 3 cut(s) | 979, 1014, 1130 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 150, 1282, 1289, 1427, 1514, 1663, 1826 |
| AflIII | ACRYGT | 1 cut(s) | 955 |
| AgsI | TTSAA | 8 cut(s) | 53, 109, 217, 910, 1007, 1147, 1371, 1756 |
| AjiI | CACGTC | 1 cut(s) | 958 |
| AjnI | CCWGG | 3 cut(s) | 149, 1198, 1581 |
| AluBI | AGCT | 7 cut(s) | 161, 333, 378, 484, 883, 988, 1034 |
| AluI | AGCT | 7 cut(s) | 161, 333, 378, 484, 883, 988, 1034 |
| Alw21I | GWGCWC | 1 cut(s) | 1323 |
| Alw26I | GTCTC | 2 cut(s) | 121, 1353 |
| AlwI | GGATC | 6 cut(s) | 94, 422, 545, 635, 708, 728 |
| Aor13HI | TCCGGA | 1 cut(s) | 694 |
| ApeKI | GCWGC | 2 cut(s) | 388, 1638 |
| ApoI | RAATTY | 4 cut(s) | 281, 1113, 1608, 1823 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 137, 169 |
| AspLEI | GCGC | 1 cut(s) | 1555 |
| AspS9I | GGNCC | 5 cut(s) | 1237, 1245, 1259, 1293, 1364 |
| AsuC2I | CCSGG | 3 cut(s) | 770, 1244, 1262 |
| AvaII | GGWCC | 2 cut(s) | 1293, 1364 |
| AxyI | CCTNAGG | 1 cut(s) | 849 |
| BaeGI | GKGCMC | 1 cut(s) | 1002 |
| BanII | GRGCYC | 1 cut(s) | 1275 |
| BauI | CACGAG | 1 cut(s) | 1350 |
| BbrPI | CACGTG | 1 cut(s) | 997 |
| BbsI | GAAGAC | 1 cut(s) | 377 |
| Bbv12I | GWGCWC | 1 cut(s) | 1323 |
| BbvI | GCAGC | 2 cut(s) | 375, 1625 |
| BccI | CCATC | 5 cut(s) | 404, 779, 823, 1225, 1804 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 93, 127 |
| BciT130I | CCWGG | 3 cut(s) | 151, 1200, 1583 |
| BclI | TGATCA | 2 cut(s) | 138, 720 |
| BcnI | CCSGG | 3 cut(s) | 770, 1244, 1262 |
| BcoDI | GTCTC | 2 cut(s) | 121, 1353 |
| BfaI | CTAG | 6 cut(s) | 204, 375, 425, 1101, 1568, 1575 |
| BfmI | CTRYAG | 2 cut(s) | 1343, 1639 |
| BfoI | RGCGCY | 1 cut(s) | 1556 |
| BfuAI | ACCTGC | 1 cut(s) | 513 |
| BisI | GCNGC | 3 cut(s) | 389, 1519, 1639 |
| BlpI | GCTNAGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 3 cut(s) | 390, 1520, 1640 |
| Bme1390I | CCNGG | 6 cut(s) | 151, 770, 1200, 1244, 1262, 1583 |
| Bme18I | GGWCC | 2 cut(s) | 1293, 1364 |
| BmgBI | CACGTC | 1 cut(s) | 958 |
| BmgT120I | GGNCC | 5 cut(s) | 1237, 1245, 1259, 1293, 1364 |
| BmiI | GGNNCC | 1 cut(s) | 1294 |
| BmrFI | CCNGG | 6 cut(s) | 151, 770, 1200, 1244, 1262, 1583 |
| BpiI | GAAGAC | 1 cut(s) | 377 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 1 cut(s) | 1732 |
| BpuMI | CCSGG | 3 cut(s) | 770, 1244, 1262 |
| BsaAI | YACGTR | 1 cut(s) | 997 |
| BsaHI | GRCGYC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 3 cut(s) | 149, 1390, 1582 |
| BsaWI | WCCGGW | 2 cut(s) | 694, 1282 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 70, 100, 1123, 1153 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 150, 1282, 1289, 1427, 1514, 1663, 1826 |
| Bse118I | RCCGGY | 2 cut(s) | 1537, 1735 |
| Bse1I | ACTGG | 2 cut(s) | 737, 1407 |
| Bse21I | CCTNAGG | 1 cut(s) | 849 |
| Bse3DI | GCAATG | 1 cut(s) | 1111 |
| BseAI | TCCGGA | 1 cut(s) | 694 |
| BseBI | CCWGG | 3 cut(s) | 151, 1200, 1583 |
| BseDI | CCNNGG | 3 cut(s) | 149, 1390, 1582 |
| BseGI | GGATG | 4 cut(s) | 622, 748, 838, 1321 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 150, 1282, 1289, 1427, 1514, 1663, 1826 |
| BseMI | GCAATG | 1 cut(s) | 1111 |
| BseMII | CTCAG | 2 cut(s) | 965, 1184 |
| BseNI | ACTGG | 2 cut(s) | 737, 1407 |
| BseRI | GAGGAG | 2 cut(s) | 338, 1102 |
| BseSI | GKGCMC | 1 cut(s) | 1002 |
| BseXI | GCAGC | 2 cut(s) | 375, 1625 |
| Bsh1236I | CGCG | 1 cut(s) | 1380 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1323 |
| BslFI | GGGAC | 1 cut(s) | 257 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 150, 1282, 1289, 1427, 1514, 1663, 1826 |
| BsmAI | GTCTC | 2 cut(s) | 121, 1353 |
| BsmBI | CGTCTC | 1 cut(s) | 121 |
| BsmFI | GGGAC | 1 cut(s) | 257 |
| BsmI | GAATGC | 1 cut(s) | 875 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1002, 1275, 1323 |
| Bsp13I | TCCGGA | 1 cut(s) | 694 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 162 |
| Bsp19I | CCATGG | 1 cut(s) | 1390 |
| BspACI | CCGC | 5 cut(s) | 347, 653, 932, 1380, 1518 |
| BspCNI | CTCAG | 2 cut(s) | 966, 1183 |
| BspEI | TCCGGA | 1 cut(s) | 694 |
| BspFNI | CGCG | 1 cut(s) | 1380 |
| BspHI | TCATGA | 2 cut(s) | 319, 754 |
| BspLI | GGNNCC | 1 cut(s) | 1294 |
| BspMAI | CTGCAG | 2 cut(s) | 1347, 1643 |
| BspMI | ACCTGC | 1 cut(s) | 513 |
| BspPI | GGATC | 6 cut(s) | 94, 422, 545, 635, 708, 728 |
| BsrDI | GCAATG | 1 cut(s) | 1111 |
| BsrFI | RCCGGY | 2 cut(s) | 1537, 1735 |
| BsrI | ACTGG | 2 cut(s) | 737, 1407 |
| BssAI | RCCGGY | 2 cut(s) | 1537, 1735 |
| BssECI | CCNNGG | 3 cut(s) | 149, 1390, 1582 |
| BssNI | GRCGYC | 1 cut(s) | 354 |
| BssSI | CACGAG | 1 cut(s) | 1350 |
| BssT1I | CCWWGG | 1 cut(s) | 1390 |
| Bst2BI | CACGAG | 1 cut(s) | 1350 |
| Bst2UI | CCWGG | 3 cut(s) | 151, 1200, 1583 |
| Bst6I | CTCTTC | 1 cut(s) | 1563 |
| BstACI | GRCGYC | 1 cut(s) | 354 |
| BstBAI | YACGTR | 1 cut(s) | 997 |
| BstC8I | GCNNGC | 4 cut(s) | 675, 1505, 1509, 1532 |
| BstDEI | CTNAG | 5 cut(s) | 162, 561, 849, 974, 1170 |
| BstDSI | CCRYGG | 1 cut(s) | 1390 |
| BstEII | GGTNACC | 1 cut(s) | 842 |
| BstF5I | GGATG | 4 cut(s) | 622, 748, 838, 1321 |
| BstFNI | CGCG | 1 cut(s) | 1380 |
| BstH2I | RGCGCY | 1 cut(s) | 1556 |
| BstHHI | GCGC | 1 cut(s) | 1555 |
| BstMAI | GTCTC | 2 cut(s) | 121, 1353 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 683, 1527, 1629, 1638, 1673 |
| BstNI | CCWGG | 3 cut(s) | 151, 1200, 1583 |
| BstNSI | RCATGY | 2 cut(s) | 317, 677 |
| BstPI | GGTNACC | 1 cut(s) | 842 |
| BstSCI | CCNGG | 6 cut(s) | 149, 768, 1198, 1242, 1260, 1581 |
| BstSFI | CTRYAG | 2 cut(s) | 1343, 1639 |
| BstSLI | GKGCMC | 1 cut(s) | 1002 |
| BstUI | CGCG | 1 cut(s) | 1380 |
| BstV1I | GCAGC | 2 cut(s) | 375, 1625 |
| BstV2I | GAAGAC | 1 cut(s) | 377 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 410, 1303 |
| Bsu36I | CCTNAGG | 1 cut(s) | 849 |
| BtgI | CCRYGG | 1 cut(s) | 1390 |
| BtgZI | GCGATG | 2 cut(s) | 856, 930 |
| BtrI | CACGTC | 1 cut(s) | 958 |
| BtsCI | GGATG | 4 cut(s) | 622, 748, 838, 1321 |
| BtsI | GCAGTG | 1 cut(s) | 540 |
| BtsIMutI | CAGTG | 2 cut(s) | 540, 744 |
| BveI | ACCTGC | 1 cut(s) | 513 |
| Cac8I | GCNNGC | 4 cut(s) | 675, 1505, 1509, 1532 |
| CciI | TCATGA | 2 cut(s) | 319, 754 |
| CfoI | GCGC | 1 cut(s) | 1555 |
| Cfr10I | RCCGGY | 2 cut(s) | 1537, 1735 |
| Cfr13I | GGNCC | 5 cut(s) | 1237, 1245, 1259, 1293, 1364 |
| CseI | GACGC | 3 cut(s) | 103, 196, 254 |
| CsiI | ACCWGGT | 1 cut(s) | 1198 |
| Csp6I | GTAC | 3 cut(s) | 978, 1013, 1129 |
| CviAII | CATG | 7 cut(s) | 181, 314, 320, 674, 755, 1310, 1391 |
| CviQI | GTAC | 3 cut(s) | 978, 1013, 1129 |
| DdeI | CTNAG | 5 cut(s) | 162, 561, 849, 974, 1170 |
| DraIII | CACNNNGTG | 1 cut(s) | 1202 |
| EaeI | YGGCCR | 4 cut(s) | 1539, 1600, 1674, 1684 |
| Eam1104I | CTCTTC | 1 cut(s) | 1563 |
| EarI | CTCTTC | 1 cut(s) | 1563 |
| EciI | GGCGGA | 2 cut(s) | 362, 947 |
| Eco130I | CCWWGG | 1 cut(s) | 1390 |
| Eco147I | AGGCCT | 1 cut(s) | 1420 |
| Eco24I | GRGCYC | 1 cut(s) | 1275 |
| Eco32I | GATATC | 1 cut(s) | 1376 |
| Eco47I | GGWCC | 2 cut(s) | 1293, 1364 |
| Eco57I | CTGAAG | 1 cut(s) | 389 |
| Eco72I | CACGTG | 1 cut(s) | 997 |
| Eco81I | CCTNAGG | 1 cut(s) | 849 |
| Eco91I | GGTNACC | 1 cut(s) | 842 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1237, 1364 |
| EcoO65I | GGTNACC | 1 cut(s) | 842 |
| EcoRII | CCWGG | 3 cut(s) | 149, 1198, 1581 |
| EcoRV | GATATC | 1 cut(s) | 1376 |
| EcoT14I | CCWWGG | 1 cut(s) | 1390 |
| EcoT22I | ATGCAT | 1 cut(s) | 679 |
| EcoT38I | GRGCYC | 1 cut(s) | 1275 |
| ErhI | CCWWGG | 1 cut(s) | 1390 |
| Esp3I | CGTCTC | 1 cut(s) | 121 |
| FaeI | CATG | 7 cut(s) | 184, 317, 323, 677, 758, 1313, 1394 |
| FaqI | GGGAC | 1 cut(s) | 257 |
| FatI | CATG | 7 cut(s) | 180, 313, 319, 673, 754, 1309, 1390 |
| FauNDI | CATATG | 2 cut(s) | 419, 679 |
| FbaI | TGATCA | 2 cut(s) | 138, 720 |
| Fnu4HI | GCNGC | 3 cut(s) | 389, 1519, 1639 |
| FokI | GGATG | 4 cut(s) | 629, 755, 845, 1328 |
| FriOI | GRGCYC | 1 cut(s) | 1275 |
| Fsp4HI | GCNGC | 3 cut(s) | 389, 1519, 1639 |
| FspBI | CTAG | 6 cut(s) | 204, 375, 425, 1101, 1568, 1575 |
| GlaI | GCGC | 1 cut(s) | 1554 |
| GluI | GCNGC | 3 cut(s) | 389, 1519, 1639 |
| HaeII | RGCGCY | 1 cut(s) | 1556 |
| HgaI | GACGC | 3 cut(s) | 103, 196, 254 |
| HhaI | GCGC | 1 cut(s) | 1555 |
| Hin1I | GRCGYC | 1 cut(s) | 354 |
| Hin1II | CATG | 7 cut(s) | 184, 317, 323, 677, 758, 1313, 1394 |
| Hin6I | GCGC | 1 cut(s) | 1553 |
| HinP1I | GCGC | 1 cut(s) | 1553 |
| HincII | GTYRAC | 2 cut(s) | 1434, 1696 |
| HindII | GTYRAC | 2 cut(s) | 1434, 1696 |
| HindIII | AAGCTT | 1 cut(s) | 482 |
| HpaI | GTTAAC | 1 cut(s) | 1696 |
| Hpy166II | GTNNAC | 5 cut(s) | 311, 1013, 1131, 1434, 1696 |
| Hpy188I | TCNGA | 8 cut(s) | 99, 104, 138, 369, 382, 975, 1217, 1839 |
| Hpy8I | GTNNAC | 5 cut(s) | 311, 1013, 1131, 1434, 1696 |
| Hpy99I | CGWCG | 2 cut(s) | 359, 1703 |
| HpyAV | CCTTC | 6 cut(s) | 13, 1219, 1377, 1410, 1469, 1697 |
| HpyCH4IV | ACGT | 4 cut(s) | 354, 957, 996, 1698 |
| HpyCH4V | TGCA | 9 cut(s) | 184, 391, 508, 533, 673, 677, 1345, 1534, 1641 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 683, 1527, 1629, 1638, 1673 |
| HpyF3I | CTNAG | 5 cut(s) | 162, 561, 849, 974, 1170 |
| HpySE526I | ACGT | 4 cut(s) | 354, 957, 996, 1698 |
| Hsp92I | GRCGYC | 1 cut(s) | 354 |
| Hsp92II | CATG | 7 cut(s) | 184, 317, 323, 677, 758, 1313, 1394 |
| HspAI | GCGC | 1 cut(s) | 1553 |
| Kpn2I | TCCGGA | 1 cut(s) | 694 |
| Ksp22I | TGATCA | 2 cut(s) | 138, 720 |
| KspAI | GTTAAC | 1 cut(s) | 1696 |
| LmnI | GCTCC | 5 cut(s) | 325, 383, 655, 1550, 1637 |
| Lsp1109I | GCAGC | 2 cut(s) | 375, 1625 |
| MabI | ACCWGGT | 1 cut(s) | 1198 |
| MaeI | CTAG | 6 cut(s) | 204, 375, 425, 1101, 1568, 1575 |
| MaeII | ACGT | 4 cut(s) | 354, 957, 996, 1698 |
| MaeIII | GTNAC | 2 cut(s) | 842, 1577 |
| MboII | GAAGA | 6 cut(s) | 65, 382, 727, 1128, 1550, 1722 |
| MhlI | GDGCHC | 3 cut(s) | 1002, 1275, 1323 |
| MlyI | GAGTC | 2 cut(s) | 1162, 1227 |
| Mph1103I | ATGCAT | 1 cut(s) | 679 |
| MroI | TCCGGA | 1 cut(s) | 694 |
| MseI | TTAA | 4 cut(s) | 279, 579, 1332, 1695 |
| MslI | CAYNNNNRTG | 5 cut(s) | 318, 408, 678, 1301, 1314 |
| MspR9I | CCNGG | 6 cut(s) | 151, 770, 1200, 1244, 1262, 1583 |
| Mva1269I | GAATGC | 1 cut(s) | 875 |
| MvaI | CCWGG | 3 cut(s) | 151, 1200, 1583 |
| MvnI | CGCG | 1 cut(s) | 1380 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 683, 1527, 1629, 1638, 1673 |
| NciI | CCSGG | 3 cut(s) | 770, 1244, 1262 |
| NcoI | CCATGG | 1 cut(s) | 1390 |
| NdeI | CATATG | 2 cut(s) | 419, 679 |
| NlaIII | CATG | 7 cut(s) | 184, 317, 323, 677, 758, 1313, 1394 |
| NlaIV | GGNNCC | 1 cut(s) | 1294 |
| NmeAIII | GCCGAG | 2 cut(s) | 1273, 1628 |
| NmuCI | GTSAC | 2 cut(s) | 842, 1577 |
| NsiI | ATGCAT | 1 cut(s) | 679 |
| NspI | RCATGY | 2 cut(s) | 317, 677 |
| PaeI | GCATGC | 1 cut(s) | 677 |
| PagI | TCATGA | 2 cut(s) | 319, 754 |
| PceI | AGGCCT | 1 cut(s) | 1420 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 885 |
| PctI | GAATGC | 1 cut(s) | 875 |
| PfeI | GAWTC | 9 cut(s) | 105, 361, 383, 460, 476, 922, 1097, 1147, 1743 |
| PflFI | GACNNNGTC | 1 cut(s) | 1171 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1514 |
| PfoI | TCCNGGA | 1 cut(s) | 768 |
| PkrI | GCNGC | 3 cut(s) | 390, 1520, 1640 |
| PleI | GAGTC | 2 cut(s) | 1162, 1226 |
| PmaCI | CACGTG | 1 cut(s) | 997 |
| PmlI | CACGTG | 1 cut(s) | 997 |
| PpsI | GAGTC | 2 cut(s) | 1162, 1226 |
| Ppu21I | YACGTR | 1 cut(s) | 997 |
| PpuMI | RGGWCCY | 1 cut(s) | 1364 |
| PsiI | TTATAA | 1 cut(s) | 969 |
| Psp5II | RGGWCCY | 1 cut(s) | 1364 |
| Psp6I | CCWGG | 3 cut(s) | 149, 1198, 1581 |
| PspCI | CACGTG | 1 cut(s) | 997 |
| PspEI | GGTNACC | 1 cut(s) | 842 |
| PspGI | CCWGG | 3 cut(s) | 149, 1198, 1581 |
| PspN4I | GGNNCC | 1 cut(s) | 1294 |
| PspPI | GGNCC | 5 cut(s) | 1237, 1245, 1259, 1293, 1364 |
| PspPPI | RGGWCCY | 1 cut(s) | 1364 |
| PstI | CTGCAG | 2 cut(s) | 1347, 1643 |
| PsyI | GACNNNGTC | 1 cut(s) | 1171 |
| RsaI | GTAC | 3 cut(s) | 979, 1014, 1130 |
| RsaNI | GTAC | 3 cut(s) | 978, 1013, 1129 |
| RseI | CAYNNNNRTG | 5 cut(s) | 318, 408, 678, 1301, 1314 |
| SaqAI | TTAA | 4 cut(s) | 279, 579, 1332, 1695 |
| SatI | GCNGC | 3 cut(s) | 389, 1519, 1639 |
| Sau96I | GGNCC | 5 cut(s) | 1237, 1245, 1259, 1293, 1364 |
| SchI | GAGTC | 2 cut(s) | 1162, 1227 |
| ScrFI | CCNGG | 6 cut(s) | 151, 770, 1200, 1244, 1262, 1583 |
| SduI | GDGCHC | 3 cut(s) | 1002, 1275, 1323 |
| SexAI | ACCWGGT | 1 cut(s) | 1198 |
| SfcI | CTRYAG | 2 cut(s) | 1343, 1639 |
| SinI | GGWCC | 2 cut(s) | 1293, 1364 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 318, 408, 678, 1301, 1314 |
| SmlI | CTYRAG | 1 cut(s) | 1711 |
| SmoI | CTYRAG | 1 cut(s) | 1711 |
| SphI | GCATGC | 1 cut(s) | 677 |
| SseBI | AGGCCT | 1 cut(s) | 1420 |
| SsiI | CCGC | 5 cut(s) | 347, 653, 932, 1380, 1518 |
| SspI | AATATT | 1 cut(s) | 46 |
| SspMI | CTAG | 6 cut(s) | 204, 375, 425, 1101, 1568, 1575 |
| StuI | AGGCCT | 1 cut(s) | 1420 |
| StyD4I | CCNGG | 6 cut(s) | 149, 768, 1198, 1242, 1260, 1581 |
| StyI | CCWWGG | 1 cut(s) | 1390 |
| TaiI | ACGT | 4 cut(s) | 357, 960, 999, 1701 |
| TaqI | TCGA | 7 cut(s) | 357, 879, 1154, 1269, 1618, 1701, 1746 |
| TaqII | GACCGA | 1 cut(s) | 1051 |
| TatI | WGTACW | 1 cut(s) | 1128 |
| TauI | GCSGC | 1 cut(s) | 1521 |
| TfiI | GAWTC | 9 cut(s) | 105, 361, 383, 460, 476, 922, 1097, 1147, 1743 |
| Tru1I | TTAA | 4 cut(s) | 279, 579, 1332, 1695 |
| Tru9I | TTAA | 4 cut(s) | 279, 579, 1332, 1695 |
| TscAI | CASTG | 2 cut(s) | 540, 744 |
| TseFI | GTSAC | 2 cut(s) | 842, 1577 |
| TseI | GCWGC | 2 cut(s) | 388, 1638 |
| Tsp45I | GTSAC | 2 cut(s) | 842, 1577 |
| TspDTI | ATGAA | 5 cut(s) | 696, 697, 743, 849, 1602 |
| TspRI | CASTG | 2 cut(s) | 540, 744 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1171 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1514 |
| VpaK11BI | GGWCC | 2 cut(s) | 1293, 1364 |
| XapI | RAATTY | 4 cut(s) | 281, 1113, 1608, 1823 |
| XbaI | TCTAGA | 1 cut(s) | 1567 |
| XceI | RCATGY | 2 cut(s) | 317, 677 |
| XspI | CTAG | 6 cut(s) | 204, 375, 425, 1101, 1568, 1575 |
| ZraI | GACGTC | 1 cut(s) | 355 |
| Zsp2I | ATGCAT | 1 cut(s) | 679 |