pycom04g17610

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0017093
Physical Location & Seq
Reverse (-)
19925911 .. 19927805
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17610.1

Sequence Viewer

Length: 519 bp
ATGCTACTAATATTTACGGAAACATATGAAAAATATGGGACACGTGTATCCCACTACCGCACACCTCGCCCACCGATTCGCAGGCACACAACTTCGATTTTATTTCCGCGTCCTCGTAAAACCAAAAGCCGCCGCCACCACCACAAAACCACAACTTCAAAACGCCCTTCAATCGTTTTCTCTCTGCAAAAGAAAAGAAGAAGAAGAAGAAAGTATCTCTCAACAATGTCGGAATCCAAGAGCAAGGTCGATTCTCTCAGGGAATGGGTTGTCGAGCACAAGCTTCGATCCGTTGGTTGTCTATGGCTAAGTGGAATTGTGGGTTCGATAGCTTACAACTGGTCTCAGCCCGGCATGAAAACCAGTGTGAGGATCATTCACGCCAGGTTGCACGCACAGGCTCTGACGCTTGCCGCATTAGCCGGTGCAGCAGTGGTCGAGTACTATGACCACAAAACTGGAGCAAAGCATGATAAATACGCGAAGTACTTCCCAATTGAGAACTTTAACAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

173

Amino Acids

20.13

Weight (kDa)

10.74

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 92 - 142 7.1e-13 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05550
fragaria_vesca FvH4_6g06640
malus_domestica MD04G1199400.v1.1 MD12G1212200.v1.1
prunus_persica Prupe.6G319900_v2.0.a1
pyrus_communis pycom04g17610
rosa_chinensis RchiOBHm_Chr3g0455841
rosa_multiflora Rmu_ssc0000046.1_g000011
rosa_roxburghii Rroxscaffold_6G00423410 Rroxscaffold_6G00423900
rosa_rugosa Rorug03G0010100
rosa_wichuraiana Rw3G005680 Rw3G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 109, 482
AciI CCGC 5 cut(s) 58, 107, 130, 133, 414
AclWI GGATC 2 cut(s) 282, 380
AcvI CACGTG 1 cut(s) 44
AfaI GTAC 2 cut(s) 443, 488
AfiI CCNNNNNNNGG 1 cut(s) 369
AflIII ACRYGT 2 cut(s) 41, 43
AgsI TTSAA 2 cut(s) 159, 171
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 2 cut(s) 283, 332
AluI AGCT 2 cut(s) 283, 332
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 282, 380
AlwNI CAGNNNCTG 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 488
AsuC2I CCSGG 1 cut(s) 351
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BbrPI CACGTG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 440
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 1 cut(s) 385
BciVI GTATCC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 348
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 4 cut(s) 130, 133, 414, 429
BlsI GCNGC 4 cut(s) 131, 134, 415, 430
BmcAI AGTACT 2 cut(s) 443, 488
Bme1390I CCNGG 2 cut(s) 351, 385
BmrFI CCNGG 2 cut(s) 351, 385
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 3 cut(s) 344, 363, 463
BseBI CCWGG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 271, 359
BseNI ACTGG 3 cut(s) 344, 363, 463
BseXI GCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 447
Bsh1236I CGCG 2 cut(s) 109, 482
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 2 cut(s) 351, 423
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 52
Bso31I GGTCTC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 287, 372
BspACI CCGC 5 cut(s) 58, 107, 130, 133, 414
BspCNI CTCAG 2 cut(s) 270, 358
BspFNI CGCG 2 cut(s) 109, 482
BspPI GGATC 2 cut(s) 282, 380
BspTNI GGTCTC 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 3 cut(s) 344, 363, 463
BssAI RCCGGY 1 cut(s) 422
BssMI GATC 2 cut(s) 287, 372
Bst2UI CCWGG 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 83, 393, 411
BstDEI CTNAG 3 cut(s) 257, 308, 345
BstFNI CGCG 2 cut(s) 109, 482
BstKTI GATC 2 cut(s) 290, 375
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 287, 372
BstMWI GCNNNNNNNGC 3 cut(s) 66, 419, 428
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 349, 383
BstUI CGCG 2 cut(s) 109, 482
BstV1I GCAGC 1 cut(s) 440
BstXI CCANNNNNNTGG 1 cut(s) 458
BsuI GTATCC 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 370, 438
Cac8I GCNNGC 3 cut(s) 83, 393, 411
CaiI CAGNNNCTG 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 422
CseI GACGC 2 cut(s) 98, 415
Csp6I GTAC 2 cut(s) 442, 487
CviAII CATG 2 cut(s) 355, 470
CviJI RGCY 7 cut(s) 129, 283, 307, 332, 349, 401, 422
CviKI_1 RGCY 7 cut(s) 129, 283, 307, 332, 349, 401, 422
CviQI GTAC 2 cut(s) 442, 487
DdeI CTNAG 3 cut(s) 257, 308, 345
DpnI GATC 2 cut(s) 289, 374
DpnII GATC 2 cut(s) 287, 372
Eco31I GGTCTC 1 cut(s) 348
Eco72I CACGTG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 383
FaeI CATG 2 cut(s) 358, 473
FaiI YATR 7 cut(s) 25, 27, 36, 304, 356, 447, 471
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 354, 469
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 4 cut(s) 130, 133, 414, 429
Fsp4HI GCNGC 4 cut(s) 130, 133, 414, 429
GluI GCNGC 4 cut(s) 130, 133, 414, 429
GsuI CTGGAG 1 cut(s) 480
HapII CCGG 2 cut(s) 351, 423
HgaI GACGC 2 cut(s) 98, 415
Hin1II CATG 2 cut(s) 358, 473
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 76, 233, 251
HpaII CCGG 2 cut(s) 351, 423
Hpy188I TCNGA 2 cut(s) 232, 405
HpyAV CCTTC 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 187, 391, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 419, 428
HpyF3I CTNAG 3 cut(s) 257, 308, 345
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 2 cut(s) 358, 473
Kzo9I GATC 2 cut(s) 287, 372
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 1 cut(s) 440
MaeII ACGT 1 cut(s) 43
MalI GATC 2 cut(s) 289, 374
MboI GATC 2 cut(s) 287, 372
MboII GAAGA 4 cut(s) 210, 213, 216, 219
MfeI CAATTG 1 cut(s) 495
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 2 cut(s) 315, 495
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 3 cut(s) 75, 123, 363
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 2 cut(s) 507, 517
MspI CCGG 2 cut(s) 351, 423
MspR9I CCNGG 2 cut(s) 351, 385
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 2 cut(s) 109, 482
MwoI GCNNNNNNNGC 3 cut(s) 66, 419, 428
NciI CCSGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 25
NdeII GATC 2 cut(s) 287, 372
NlaIII CATG 2 cut(s) 358, 473
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 3 cut(s) 76, 233, 251
PkrI GCNGC 4 cut(s) 131, 134, 415, 430
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 383
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 383
PstNI CAGNNNCTG 1 cut(s) 403
RsaI GTAC 2 cut(s) 443, 488
RsaNI GTAC 2 cut(s) 442, 487
SaqAI TTAA 2 cut(s) 507, 517
SatI GCNGC 4 cut(s) 130, 133, 414, 429
Sau3AI GATC 2 cut(s) 287, 372
ScaI AGTACT 2 cut(s) 443, 488
ScrFI CCNGG 2 cut(s) 351, 385
SduI GDGCHC 1 cut(s) 279
SetI ASST 6 cut(s) 46, 67, 249, 285, 334, 389
Sse9I AATT 2 cut(s) 315, 495
SsiI CCGC 5 cut(s) 58, 107, 130, 133, 414
SspI AATATT 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 349, 383
TaiI ACGT 1 cut(s) 46
TaqI TCGA 6 cut(s) 95, 249, 273, 286, 326, 438
TasI AATT 2 cut(s) 315, 495
TatI WGTACW 2 cut(s) 441, 486
TauI GCSGC 3 cut(s) 132, 135, 416
TfiI GAWTC 3 cut(s) 76, 233, 251
Tru1I TTAA 2 cut(s) 507, 517
Tru9I TTAA 2 cut(s) 507, 517
TscAI CASTG 2 cut(s) 370, 438
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 42, 371
TspGWI ACGGA 2 cut(s) 32, 280
TspRI CASTG 2 cut(s) 370, 438
XmnI GAANNNNTTC 1 cut(s) 488
ZrmI AGTACT 2 cut(s) 443, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.