MD04G1199400.v1.1

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0017093
Physical Location & Seq
Reverse (-)
28642274 .. 28644592
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1199400.v1.1.491

Sequence Viewer

Length: 294 bp
ATGTCGGAATCCAAGAGCAAGGTCGATTCTCTCAGGGAATGGGTTGTCGAGCACAAGCTTCGATCCGTTGGTTGTCTATGGCTAAGTGGAATTGTGGGTTCGATAGCTTACAACTGGTCTCAGCCCGGCATGAAGACCAGTGTGAGGATCATTCACGCCAGGTTGCACGCACAGGCTCTGACGCTCGCCGCATTAGCCGGTGCAGCAGTGGTCGAGTACTATGACCACAAAAGTGGAGCAAAGCATGATAAATACGCGAAGTACTTCCCAATTGAGAACTTTAACAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

98

Amino Acids

10.88

Weight (kDa)

9.3

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 17 - 67 1.5e-13 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05550
fragaria_vesca FvH4_6g06640
malus_domestica MD04G1199400.v1.1 MD12G1212200.v1.1
prunus_persica Prupe.6G319900_v2.0.a1
pyrus_communis pycom04g17610
rosa_chinensis RchiOBHm_Chr3g0455841
rosa_multiflora Rmu_ssc0000046.1_g000011
rosa_roxburghii Rroxscaffold_6G00423410 Rroxscaffold_6G00423900
rosa_rugosa Rorug03G0010100
rosa_wichuraiana Rw3G005680 Rw3G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AciI CCGC 1 cut(s) 189
AclWI GGATC 2 cut(s) 57, 155
AfaI GTAC 2 cut(s) 218, 263
AfiI CCNNNNNNNGG 1 cut(s) 144
AjnI CCWGG 1 cut(s) 158
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 2 cut(s) 58, 107
AluI AGCT 2 cut(s) 58, 107
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 2 cut(s) 57, 155
AlwNI CAGNNNCTG 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 2 cut(s) 189, 204
BlsI GCNGC 2 cut(s) 190, 205
BmcAI AGTACT 2 cut(s) 218, 263
Bme1390I CCNGG 2 cut(s) 126, 160
BmrFI CCNGG 2 cut(s) 126, 160
BpiI GAAGAC 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 119, 138
BseBI CCWGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 46, 134
BseNI ACTGG 2 cut(s) 119, 138
BseXI GCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 126, 198
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 62, 147
BspACI CCGC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 45, 133
BspFNI CGCG 1 cut(s) 257
BspPI GGATC 2 cut(s) 57, 155
BspTNI GGTCTC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 2 cut(s) 119, 138
BssAI RCCGGY 1 cut(s) 197
BssMI GATC 2 cut(s) 62, 147
Bst2UI CCWGG 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 168, 186
BstDEI CTNAG 3 cut(s) 32, 83, 120
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 2 cut(s) 65, 150
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 62, 147
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 124, 158
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 145, 213
Cac8I GCNNGC 2 cut(s) 168, 186
CaiI CAGNNNCTG 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 197
CseI GACGC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 217, 262
CviAII CATG 2 cut(s) 130, 245
CviJI RGCY 6 cut(s) 58, 82, 107, 124, 176, 197
CviKI_1 RGCY 6 cut(s) 58, 82, 107, 124, 176, 197
CviQI GTAC 2 cut(s) 217, 262
DdeI CTNAG 3 cut(s) 32, 83, 120
DpnI GATC 2 cut(s) 64, 149
DpnII GATC 2 cut(s) 62, 147
Eco31I GGTCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 133, 248
FaiI YATR 4 cut(s) 79, 131, 222, 246
FatI CATG 2 cut(s) 129, 244
Fnu4HI GCNGC 2 cut(s) 189, 204
Fsp4HI GCNGC 2 cut(s) 189, 204
GluI GCNGC 2 cut(s) 189, 204
HapII CCGG 2 cut(s) 126, 198
HgaI GACGC 1 cut(s) 190
Hin1II CATG 2 cut(s) 133, 248
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 2 cut(s) 8, 26
HpaII CCGG 2 cut(s) 126, 198
Hpy188I TCNGA 2 cut(s) 7, 180
HpyCH4V TGCA 2 cut(s) 166, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 3 cut(s) 32, 83, 120
Hsp92II CATG 2 cut(s) 133, 248
Kzo9I GATC 2 cut(s) 62, 147
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 8 cut(s) 19, 100, 139, 145, 151, 158, 172, 211
Lsp1109I GCAGC 1 cut(s) 215
MalI GATC 2 cut(s) 64, 149
MboI GATC 2 cut(s) 62, 147
MboII GAAGA 1 cut(s) 145
MfeI CAATTG 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 2 cut(s) 90, 270
MnlI CCTC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 2 cut(s) 282, 292
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 2 cut(s) 126, 198
MspR9I CCNGG 2 cut(s) 126, 160
MunI CAATTG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NciI CCSGG 1 cut(s) 126
NdeII GATC 2 cut(s) 62, 147
NlaIII CATG 2 cut(s) 133, 248
OliI CACNNNNGTG 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 8, 26
PkrI GCNGC 2 cut(s) 190, 205
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 178
RsaI GTAC 2 cut(s) 218, 263
RsaNI GTAC 2 cut(s) 217, 262
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 2 cut(s) 282, 292
SatI GCNGC 2 cut(s) 189, 204
Sau3AI GATC 2 cut(s) 62, 147
ScaI AGTACT 2 cut(s) 218, 263
ScrFI CCNGG 2 cut(s) 126, 160
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 24, 60, 109, 164
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 2 cut(s) 90, 270
SsiI CCGC 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 124, 158
TaqI TCGA 5 cut(s) 24, 48, 61, 101, 213
TasI AATT 2 cut(s) 90, 270
TatI WGTACW 2 cut(s) 216, 261
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 2 cut(s) 8, 26
Tru1I TTAA 2 cut(s) 282, 292
Tru9I TTAA 2 cut(s) 282, 292
TscAI CASTG 2 cut(s) 145, 213
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 146
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 2 cut(s) 145, 213
XmnI GAANNNNTTC 1 cut(s) 263
ZrmI AGTACT 2 cut(s) 218, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.