AT3G05675

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003442
Physical Location & Seq
Reverse (-)
1657758 .. 1660429
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05675.1

Sequence Viewer

Length: 1326 bp
ATGGAGCCTCGAGATAATCAAGCCGAGGCTTCATATACATTTGGTGATCGATCAAGCAGTGACATAGTTGTTAGACTAAGAAATGAAGAAGGTCGTGATGATTGGATCTATTGCCATTCCAAGATCCTTAGTGAGAAAAGCCAGTATTTTGCTGACCGTCTCTCTGATAAATGGCCCACTTGCAAGATTCTTGATTCACGTTACTGTGTTGAGGTCATCTGTCAAGAATCAGACTATGATCATCATATCAATCTCTTAAGACTTCTCTATGTTGTCTCTGATGATGTCCATGAGGATAACTTGTGTCATAATGTGAAAAGTGCGTTGGGGATTCTCTCTGTCGCTAAAGAACTTAGTTGCCCTCAGATTGTCACTGCTTGTGTCAACTACTTGGAAGCTGTTCCATGGGAAGAAGGCGAAGAGGAAGAGATTCTGCGGATTGTACCGAGGATTGGATCAGAAGCAGAGCCGATTCTTGCCCGTCTCCAACCAGTTGATCAGTCCGCTGTTCTTGAAATCTTTGTATCGGCTTTTAGGTTTGCTACTTCGTCCCCGCCTTTGCTCTTGGGTGACATAAAATCCTCTGCTCAAGAACAGATTGAGTATATGATAACTGAAGATGACGATGCACCGTTGTTGATTGCTGATGAAGAAGTCAAGCTTGAAGTAAAACAATGTGTAAAGAGCCTGTTTGTTAGATTCTTCCAGTGCCTAGAAGAAATCACTTTGAAACCCGTCGAGTCTGAGGTAATCAACAAAAAGGGGTCTTTTAGGATGGTCCTTTCAGATATGTGTTGGGTTTTTCAGATATTAACGAAGATGGAAGTTGTTAGAGATTTTGTTATAACATGGGCTGACATATCTGAGAAGTTAGTTAAGGTAGTTGAGCAGTTGGAAACAACAGTTGTAGAGGCTGTTGAGATAAGAGTCAAGGTCATCGAGGTGACTGCAAAAGTCATAGAAGCGATTGGTTATGGAACAGTGATATTACCAACAGCGAAACGGCTTCAGATGGTAAAACTATGGCTTCCTTTTGTAAGAAACACAAAGCCTCTTGTTGACTCACCGGTTAGAGAAGATGAGGAGAATGATACTGTGAGATATAAAATCGACGGAGAGATATGGCAAGCTTTAGAATCTTCCTTTGTATCGATAATTCTGGCATTGCCATCTGCAGACCAAGCTGAGATATTGACTGAATGGTTAAGCAAGAATGGGTTGTATCCGGATTTAACAGAAGCTTTCGAGGTTTGGTGTTACAGATCGAAAGTCGCGAAGAGAAGATTGGGTTTAGTCGGGGGTGAAGAGGAGAACGGCATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

441

Amino Acids

50.27

Weight (kDa)

4.66

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 223 - 423 2.5e-07 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
AccII CGCG 1 cut(s) 1274
AccIII TCCGGA 1 cut(s) 1225
AciI CCGC 3 cut(s) 436, 504, 554
AclWI GGATC 3 cut(s) 113, 118, 463
AcuI CTGAAG 2 cut(s) 636, 992
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 452
AflII CTTAAG 1 cut(s) 256
AgeI ACCGGT 1 cut(s) 1066
AgsI TTSAA 3 cut(s) 515, 665, 730
AjuI GAANNNNNNNTTGG 4 cut(s) 308, 340, 1268, 1300
AluBI AGCT 5 cut(s) 398, 661, 1130, 1184, 1241
AluI AGCT 5 cut(s) 398, 661, 1130, 1184, 1241
Alw26I GTCTC 3 cut(s) 164, 280, 488
AlwI GGATC 3 cut(s) 113, 118, 463
Ama87I CYCGRG 1 cut(s) 9
Aor13HI TCCGGA 1 cut(s) 1225
AoxI GGCC 1 cut(s) 173
AsiGI ACCGGT 1 cut(s) 1066
Asp700I GAANNNNTTC 2 cut(s) 399, 429
AspS9I GGNCC 2 cut(s) 174, 778
AsuHPI GGTGA 5 cut(s) 56, 581, 955, 1056, 1313
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 778
BccI CCATC 4 cut(s) 769, 814, 1006, 1177
BceAI ACGGC 1 cut(s) 1019
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BciVI GTATCC 1 cut(s) 1233
BclI TGATCA 2 cut(s) 238, 496
BcoDI GTCTC 3 cut(s) 164, 280, 488
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 1 cut(s) 1173
BfrI CTTAAG 1 cut(s) 256
BfuI GTATCC 1 cut(s) 1233
Bme18I GGWCC 1 cut(s) 778
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 174, 778
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 616
BpuEI CTTGAG 1 cut(s) 573
Bsa29I ATCGAT 2 cut(s) 49, 1151
BsaJI CCNNGG 3 cut(s) 24, 404, 446
BsaWI WCCGGW 2 cut(s) 1066, 1225
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse118I RCCGGY 1 cut(s) 1066
Bse1I ACTGG 3 cut(s) 142, 491, 706
Bse3DI GCAATG 1 cut(s) 1163
BseAI TCCGGA 1 cut(s) 1225
BseCI ATCGAT 2 cut(s) 49, 1151
BseDI CCNNGG 3 cut(s) 24, 404, 446
BseGI GGATG 1 cut(s) 780
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMI GCAATG 1 cut(s) 1163
BseMII CTCAG 4 cut(s) 377, 735, 855, 1176
BseNI ACTGG 3 cut(s) 142, 491, 706
BseRI GAGGAG 2 cut(s) 1097, 1322
Bsh1236I CGCG 1 cut(s) 1274
BshFI GGCC 1 cut(s) 175
BshTI ACCGGT 1 cut(s) 1066
BshVI ATCGAT 2 cut(s) 49, 1151
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 1067, 1226
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 3 cut(s) 164, 280, 488
BsmBI CGTCTC 2 cut(s) 164, 488
BsmFI GGGAC 1 cut(s) 535
BsnI GGCC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 1225
Bsp143I GATC 8 cut(s) 46, 50, 105, 123, 238, 455, 496, 1262
Bsp19I CCATGG 1 cut(s) 404
Bsp68I TCGCGA 1 cut(s) 1274
BspACI CCGC 3 cut(s) 436, 504, 554
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 4 cut(s) 376, 736, 856, 1177
BspDI ATCGAT 2 cut(s) 49, 1151
BspEI TCCGGA 1 cut(s) 1225
BspFNI CGCG 1 cut(s) 1274
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 1177
BspPI GGATC 3 cut(s) 113, 118, 463
BspTI CTTAAG 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 1163
BsrFI RCCGGY 1 cut(s) 1066
BsrI ACTGG 3 cut(s) 142, 491, 706
BssAI RCCGGY 1 cut(s) 1066
BssECI CCNNGG 3 cut(s) 24, 404, 446
BssMI GATC 8 cut(s) 46, 50, 105, 123, 238, 455, 496, 1262
BssT1I CCWWGG 1 cut(s) 404
Bst4CI ACNGT 6 cut(s) 158, 206, 633, 904, 982, 1096
Bst6I CTCTTC 4 cut(s) 414, 420, 1271, 1299
BstAFI CTTAAG 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 1128
BstDEI CTNAG 7 cut(s) 77, 128, 353, 363, 744, 864, 1185
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 1 cut(s) 780
BstFNI CGCG 1 cut(s) 1274
BstKTI GATC 8 cut(s) 49, 53, 108, 126, 241, 458, 499, 1265
BstMAI GTCTC 3 cut(s) 164, 280, 488
BstMBI GATC 8 cut(s) 46, 50, 105, 123, 238, 455, 496, 1262
BstMWI GCNNNNNNNGC 1 cut(s) 1181
BstNSI RCATGY 1 cut(s) 1321
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 1 cut(s) 1274
BstX2I RGATCY 2 cut(s) 105, 123
BstYI RGATCY 2 cut(s) 105, 123
Bsu15I ATCGAT 2 cut(s) 49, 1151
BsuI GTATCC 1 cut(s) 1233
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 2 cut(s) 49, 1151
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 1 cut(s) 780
BtsI GCAGTG 2 cut(s) 64, 372
BtsIMutI CAGTG 4 cut(s) 64, 372, 713, 987
BtuMI TCGCGA 1 cut(s) 1274
Cac8I GCNNGC 1 cut(s) 1128
Cfr10I RCCGGY 1 cut(s) 1066
Cfr13I GGNCC 2 cut(s) 174, 778
ClaI ATCGAT 2 cut(s) 49, 1151
Csp6I GTAC 1 cut(s) 443
CspAI ACCGGT 1 cut(s) 1066
CviAII CATG 4 cut(s) 290, 405, 849, 1318
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 7 cut(s) 77, 128, 353, 363, 744, 864, 1185
DpnI GATC 8 cut(s) 48, 52, 107, 125, 240, 457, 498, 1264
DpnII GATC 8 cut(s) 46, 50, 105, 123, 238, 455, 496, 1262
Eam1104I CTCTTC 4 cut(s) 414, 420, 1271, 1299
EarI CTCTTC 4 cut(s) 414, 420, 1271, 1299
Eco130I CCWWGG 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 636, 992
Eco88I CYCGRG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
Esp3I CGTCTC 2 cut(s) 164, 488
FaeI CATG 4 cut(s) 293, 408, 852, 1321
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 535
FatI CATG 4 cut(s) 289, 404, 848, 1317
FauI CCCGC 1 cut(s) 561
FbaI TGATCA 2 cut(s) 238, 496
FokI GGATG 1 cut(s) 787
FspBI CTAG 1 cut(s) 713
HaeIII GGCC 1 cut(s) 175
HapII CCGG 2 cut(s) 1067, 1226
Hin1II CATG 4 cut(s) 293, 408, 852, 1321
HincII GTYRAC 2 cut(s) 385, 1060
HindII GTYRAC 2 cut(s) 385, 1060
HindIII AAGCTT 3 cut(s) 659, 1128, 1239
HpaII CCGG 2 cut(s) 1067, 1226
HphI GGTGA 5 cut(s) 56, 581, 955, 1056, 1313
Hpy166II GTNNAC 2 cut(s) 385, 1060
Hpy188III TCNNGA 8 cut(s) 11, 95, 191, 224, 512, 590, 1226, 1273
Hpy8I GTNNAC 2 cut(s) 385, 1060
Hpy99I CGWCG 2 cut(s) 740, 1115
HpyAV CCTTC 2 cut(s) 83, 407
HpyCH4III ACNGT 6 cut(s) 158, 206, 633, 904, 982, 1096
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 183, 629, 950, 1175
HpyF10VI GCNNNNNNNGC 1 cut(s) 1181
HpyF3I CTNAG 7 cut(s) 77, 128, 353, 363, 744, 864, 1185
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 4 cut(s) 293, 408, 852, 1321
Kpn2I TCCGGA 1 cut(s) 1225
Ksp22I TGATCA 2 cut(s) 238, 496
Kzo9I GATC 8 cut(s) 46, 50, 105, 123, 238, 455, 496, 1262
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 155, 504, 701, 719, 1080, 1145, 1239
LweI GCATC 1 cut(s) 616
MaeI CTAG 1 cut(s) 713
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 6 cut(s) 59, 200, 370, 569, 943, 1256
MalI GATC 8 cut(s) 48, 52, 107, 125, 240, 457, 498, 1264
MboI GATC 8 cut(s) 46, 50, 105, 123, 238, 455, 496, 1262
MflI RGATCY 2 cut(s) 105, 123
MluCI AATT 1 cut(s) 1155
MlyI GAGTC 3 cut(s) 749, 936, 1055
MmeI TCCRAC 2 cut(s) 511, 873
MroI TCCGGA 1 cut(s) 1225
MroXI GAANNNNTTC 2 cut(s) 399, 429
MseI TTAA 6 cut(s) 257, 812, 876, 1205, 1232, 1324
MslI CAYNNNNRTG 1 cut(s) 941
MspA1I CMGCKG 1 cut(s) 506
MspCI CTTAAG 1 cut(s) 256
MspI CCGG 2 cut(s) 1067, 1226
MvnI CGCG 1 cut(s) 1274
MwoI GCNNNNNNNGC 1 cut(s) 1181
NcoI CCATGG 1 cut(s) 404
NdeII GATC 8 cut(s) 46, 50, 105, 123, 238, 455, 496, 1262
NlaIII CATG 4 cut(s) 293, 408, 852, 1321
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 4 cut(s) 59, 370, 569, 943
NruI TCGCGA 1 cut(s) 1274
NspI RCATGY 1 cut(s) 1321
PaeR7I CTCGAG 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 1271
PdmI GAANNNNTTC 2 cut(s) 399, 429
PfeI GAWTC 8 cut(s) 187, 194, 227, 331, 430, 472, 699, 1136
PinAI ACCGGT 1 cut(s) 1066
PleI GAGTC 3 cut(s) 748, 935, 1055
PpsI GAGTC 3 cut(s) 748, 935, 1055
PsiI TTATAA 1 cut(s) 845
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 174, 778
PstI CTGCAG 1 cut(s) 1177
PsuI RGATCY 2 cut(s) 105, 123
RruI TCGCGA 1 cut(s) 1274
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 941
SaqAI TTAA 6 cut(s) 257, 812, 876, 1205, 1232, 1324
Sau3AI GATC 8 cut(s) 46, 50, 105, 123, 238, 455, 496, 1262
Sau96I GGNCC 2 cut(s) 174, 778
SchI GAGTC 3 cut(s) 749, 936, 1055
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 1 cut(s) 1173
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 778
SlaI CTCGAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 941
SmlI CTYRAG 3 cut(s) 9, 256, 588
SmoI CTYRAG 3 cut(s) 9, 256, 588
Sse9I AATT 1 cut(s) 1155
SsiI CCGC 3 cut(s) 436, 504, 554
SspMI CTAG 1 cut(s) 713
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 6 cut(s) 158, 206, 633, 904, 982, 1096
TaiI ACGT 1 cut(s) 202
TaqI TCGA 8 cut(s) 10, 49, 738, 939, 1110, 1151, 1245, 1265
TasI AATT 1 cut(s) 1155
TfiI GAWTC 8 cut(s) 187, 194, 227, 331, 430, 472, 699, 1136
Tru1I TTAA 6 cut(s) 257, 812, 876, 1205, 1232, 1324
Tru9I TTAA 6 cut(s) 257, 812, 876, 1205, 1232, 1324
TscAI CASTG 4 cut(s) 64, 379, 713, 987
TseFI GTSAC 4 cut(s) 59, 370, 569, 943
Tsp45I GTSAC 4 cut(s) 59, 370, 569, 943
TspDTI ATGAA 3 cut(s) 21, 99, 663
TspGWI ACGGA 1 cut(s) 1128
TspRI CASTG 4 cut(s) 64, 379, 713, 987
Vha464I CTTAAG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 778
XceI RCATGY 1 cut(s) 1321
XhoI CTCGAG 1 cut(s) 9
XmnI GAANNNNTTC 2 cut(s) 399, 429
XspI CTAG 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.