Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003442

Physical Location & Seq

Genomic Coordinates Forward (+)

4261780 .. 4263276

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGCTTATGTACAGATTCCAACATGTGTTCAAGGTATACTCATTAGTGCTTAACGCTCCAATGGACTATCTTGGTTCTGAAAAAAGTACGTCTAGCCGGATTGGGGACCGATCAACCAGTGATGTTGTTGTGAGGATACGCACAGAGGATGGGCGGGATGATCGGCTATATTGTCATTCCCAGATCCTCATGGAAAAGAGCAAGTATTTCGCTGATCGCCTATCTGAAAATTGGCCAACATGTCAGATTCTTGACTCACGCAACTGCGTTGACGTATACTGCCAAGAATCAGAATTTGACCATCATGTCATTGTTCTCCGCCTTTTTTACGTCGCAGTAGATGGCTTAGTTGGTAACTTGTGGCATGGTGTAAAAAACGCCATTGGAATTCTCCAGGTGGCTGTCAAGCTCGGATGCCCACAAATCATAACTGCTTGTGTGAACTACTTAGAAGCAGTTTCCTGGGAAGAGTCCGAGGAGGAGGACATTTTAAAGATCGTACCACGCCTGGGATCACAAGTGGAGCCAATTCTTGCCCGTCTTCTTCCAGTCAATCACTCATCAATTATGGGGATATTTTTGTCAACCATCCGATTTGCCACATCGTGCCCTCCTCCAATCATGAATGATCTCAAGTCTTCTGCCCAGGAGCAGCTTGAGTACATGATTACTGAAGATGATGATGCCCCGCTCTTAACAGCCGATGATGAGATCAAATCCCAGGTGAAAGAATGTGTGAATAGACTATTTGGAAGATTTAGTAATCTATTAGAAGCCTTGTTATGTGAAGTAGAATTATCTTCTGATGGAGGGAAGATGCAGTCGTTTCAAACGTTTTTATCAGATCTGTCGTGGACATGCCAGATATTAACTAAGTTGGAAACTATGAGGGAACTTGTCTGCAATTGGATGGATGCATCGGATAAAATAGTTAACGTTGTAAAGCAAGCAAGGCCGACAGCTGAACTAATTGAGACAAAGCTTAGGATTGTTGAGGTTGCAGCAAAGATTCTAGAGGCAATAGGTTACGGCACTGTCATTTTGCCAACTGCAAAACGGCTTCATATGGTTAAGGTGTGGCTTCCTTTTGTGAGGGTTGCAAAACCGGTGATCGATTCTGCCACAACTACCGGTGATGACGCTCCTGCGCTAAAGATGGATAGTGAACTGTGGCAATCCTTGGAATCCACATTTGTTTCCATAATTCTTACGCTTCCATCCGTCGAGCAGGCGGAGATATTGACTGAATGGTTGGAGAATGAACATATTCAATATCCTGACCTGACCGAGGCATTTGAGGTATGGTGTTACAGATCCAAGGTTTCCAAAAGAAGACTATCATTTATATCGGTGAACCATGAGAAAATCGATACACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

460

Amino Acids

52.15

Weight (kDa)

5.05

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05675 AT3G05675 AT3G05675
fragaria_vesca	FvH4_6g20360 FvH4_6g20360 FvH4_6g20360 FvH4_6g20360 FvH4_6g20360 FvH4_6g20360 FvH4_6g20360
malus_domestica	MD12G1049200.v1.1 MD14G1048100.v1.1
prunus_persica	Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1
pyrus_communis	pycom12g04410 pycom14g03960
rosa_chinensis	RchiOBHm_Chr3g0475971
rosa_laevigata	RLG00000023794
rosa_multiflora	Rmu_sc0000585.1_g000029
rosa_roxburghii	Rroxscaffold_6G00405570
rosa_rugosa	Rorug03G0152700
rosa_samantha	Rh3AG203500 Rh3BG233100 Rh3CG228800 Rh3DG229000
rosa_wichuraiana	Rw3G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	691
AccI	GTMKAC	2 cut(s)	36, 276
AciI	CCGC	4 cut(s)	154, 319, 689, 1232
AclI	AACGTT	2 cut(s)	833, 936
AclWI	GGATC	3 cut(s)	178, 520, 1308
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	293, 387
AcuI	CTGAAG	1 cut(s)	693
AdeI	CACNNNGTG	1 cut(s)	606
AfaI	GTAC	4 cut(s)	11, 88, 501, 662
AfiI	CCNNNNNNNGG	3 cut(s)	103, 509, 1288
AflIII	ACRYGT	2 cut(s)	22, 239
AgeI	ACCGGT	2 cut(s)	1105, 1130
AgsI	TTSAA	3 cut(s)	31, 830, 1271
AjnI	CCWGG	5 cut(s)	393, 461, 507, 645, 720
AluBI	AGCT	4 cut(s)	409, 655, 962, 982
AluI	AGCT	4 cut(s)	409, 655, 962, 982
Alw26I	GTCTC	1 cut(s)	968
AlwI	GGATC	3 cut(s)	178, 520, 1308
AoxI	GGCC	2 cut(s)	233, 953
ApeKI	GCWGC	2 cut(s)	652, 1001
ApoI	RAATTY	2 cut(s)	293, 387
AsiGI	ACCGGT	2 cut(s)	1105, 1130
Asp700I	GAANNNNTTC	1 cut(s)	1266
AspLEI	GCGC	1 cut(s)	1150
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	4 cut(s)	736, 1120, 1145, 1363
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	611
BalI	TGGCCA	1 cut(s)	235
BbsI	GAAGAC	3 cut(s)	533, 630, 1339
BbvI	GCAGC	2 cut(s)	664, 1013
BccI	CCATC	8 cut(s)	143, 309, 335, 596, 800, 904, 1150, 1225
BceAI	ACGGC	2 cut(s)	1045, 1073
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	5 cut(s)	395, 463, 509, 647, 722
BciVI	GTATCC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	968
BfaI	CTAG	2 cut(s)	93, 1013
BfuI	GTATCC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	844
BisI	GCNGC	2 cut(s)	653, 1002
BlsI	GCNGC	2 cut(s)	654, 1003
Bme1390I	CCNGG	5 cut(s)	395, 463, 509, 647, 722
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	107, 525
BmrFI	CCNGG	5 cut(s)	395, 463, 509, 647, 722
BmsI	GCATC	5 cut(s)	404, 673, 807, 904, 926
BpiI	GAAGAC	3 cut(s)	533, 630, 1339
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	983
BpuEI	CTTGAG	2 cut(s)	617, 677
Bsa29I	ATCGAT	2 cut(s)	1113, 1368
BsaJI	CCNNGG	8 cut(s)	462, 474, 508, 645, 720, 1179, 1287, 1317
BsaWI	WCCGGW	2 cut(s)	1105, 1130
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 509, 1288
Bse118I	RCCGGY	2 cut(s)	1105, 1130
Bse1I	ACTGG	2 cut(s)	117, 548
BseBI	CCWGG	5 cut(s)	395, 463, 509, 647, 722
BseCI	ATCGAT	2 cut(s)	1113, 1368
BseDI	CCNNGG	8 cut(s)	462, 474, 508, 645, 720, 1179, 1287, 1317
BseGI	GGATG	7 cut(s)	154, 163, 419, 588, 915, 919, 1217
BseLI	CCNNNNNNNGG	3 cut(s)	103, 509, 1288
BseNI	ACTGG	2 cut(s)	117, 548
BseRI	GAGGAG	3 cut(s)	491, 494, 603
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	664, 1013
BshFI	GGCC	2 cut(s)	235, 955
BshTI	ACCGGT	2 cut(s)	1105, 1130
BshVI	ATCGAT	2 cut(s)	1113, 1368
BsiSI	CCGG	3 cut(s)	97, 1106, 1131
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	3 cut(s)	103, 509, 1288
BsmAI	GTCTC	1 cut(s)	968
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	235, 955
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp1407I	TGTACA	1 cut(s)	9
BspACI	CCGC	4 cut(s)	154, 319, 689, 1232
BspANI	GGCC	2 cut(s)	235, 955
BspDI	ATCGAT	2 cut(s)	1113, 1368
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	2 cut(s)	107, 525
BspPI	GGATC	3 cut(s)	178, 520, 1308
BsrBI	CCGCTC	1 cut(s)	691
BsrFI	RCCGGY	2 cut(s)	1105, 1130
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	2 cut(s)	117, 548
BssAI	RCCGGY	2 cut(s)	1105, 1130
BssECI	CCNNGG	8 cut(s)	462, 474, 508, 645, 720, 1179, 1287, 1317
BssNAI	GTATAC	2 cut(s)	37, 277
BssT1I	CCWWGG	2 cut(s)	1179, 1317
Bst1107I	GTATAC	2 cut(s)	37, 277
Bst2UI	CCWGG	5 cut(s)	395, 463, 509, 647, 722
Bst4CI	ACNGT	2 cut(s)	1036, 1170
Bst6I	CTCTTC	1 cut(s)	462
BstAUI	TGTACA	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	948, 1230
BstDEI	CTNAG	4 cut(s)	346, 448, 873, 983
BstENI	CCTNNNNNAGG	1 cut(s)	1286
BstF5I	GGATG	7 cut(s)	154, 163, 419, 588, 915, 919, 1217
BstHHI	GCGC	1 cut(s)	1150
BstMAI	GTCTC	1 cut(s)	968
BstMWI	GCNNNNNNNGC	1 cut(s)	952
BstNI	CCWGG	5 cut(s)	395, 463, 509, 647, 722
BstNSI	RCATGY	3 cut(s)	26, 243, 861
BstSCI	CCNGG	5 cut(s)	393, 461, 507, 645, 720
BstSLI	GKGCMC	1 cut(s)	611
BstV1I	GCAGC	2 cut(s)	664, 1013
BstV2I	GAAGAC	3 cut(s)	533, 630, 1339
BstX2I	RGATCY	3 cut(s)	183, 844, 1313
BstYI	RGATCY	3 cut(s)	183, 844, 1313
BstZ17I	GTATAC	2 cut(s)	37, 277
Bsu15I	ATCGAT	2 cut(s)	1113, 1368
BsuI	GTATCC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	235, 955
BsuTUI	ATCGAT	2 cut(s)	1113, 1368
BtsCI	GGATG	7 cut(s)	154, 163, 419, 588, 915, 919, 1217
BtsIMutI	CAGTG	2 cut(s)	124, 1032
Cac8I	GCNNGC	2 cut(s)	948, 1230
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	1 cut(s)	1150
Cfr10I	RCCGGY	2 cut(s)	1105, 1130
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	2 cut(s)	1113, 1368
CseI	GACGC	1 cut(s)	1148
Csp6I	GTAC	4 cut(s)	10, 87, 500, 661
CspAI	ACCGGT	2 cut(s)	1105, 1130
CviAII	CATG	9 cut(s)	23, 190, 240, 305, 365, 622, 664, 858, 1358
CviQI	GTAC	4 cut(s)	10, 87, 500, 661
DdeI	CTNAG	4 cut(s)	346, 448, 873, 983
DraI	TTTAAA	1 cut(s)	492
DraIII	CACNNNGTG	1 cut(s)	606
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
EciI	GGCGGA	2 cut(s)	308, 1247
Eco130I	CCWWGG	2 cut(s)	1179, 1317
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	693
EcoNI	CCTNNNNNAGG	1 cut(s)	1286
EcoRI	GAATTC	1 cut(s)	387
EcoRII	CCWGG	5 cut(s)	393, 461, 507, 645, 720
EcoT14I	CCWWGG	2 cut(s)	1179, 1317
EcoT22I	ATGCAT	1 cut(s)	919
ErhI	CCWWGG	2 cut(s)	1179, 1317
FaeI	CATG	9 cut(s)	26, 193, 243, 308, 368, 625, 667, 861, 1361
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	9 cut(s)	22, 189, 239, 304, 364, 621, 663, 857, 1357
FauI	CCCGC	2 cut(s)	147, 696
FauNDI	CATATG	1 cut(s)	1065
FblI	GTMKAC	2 cut(s)	36, 276
Fnu4HI	GCNGC	2 cut(s)	653, 1002
FokI	GGATG	7 cut(s)	161, 170, 426, 575, 922, 926, 1204
Fsp4HI	GCNGC	2 cut(s)	653, 1002
FspBI	CTAG	2 cut(s)	93, 1013
GlaI	GCGC	1 cut(s)	1149
GluI	GCNGC	2 cut(s)	653, 1002
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	235, 955
HapII	CCGG	3 cut(s)	97, 1106, 1131
HgaI	GACGC	1 cut(s)	1148
HhaI	GCGC	1 cut(s)	1150
Hin1II	CATG	9 cut(s)	26, 193, 243, 308, 368, 625, 667, 861, 1361
Hin6I	GCGC	1 cut(s)	1148
HinP1I	GCGC	1 cut(s)	1148
HincII	GTYRAC	3 cut(s)	271, 585, 934
HindII	GTYRAC	3 cut(s)	271, 585, 934
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	8 cut(s)	15, 247, 254, 287, 470, 1009, 1115, 1184
HpaI	GTTAAC	1 cut(s)	934
HpaII	CCGG	3 cut(s)	97, 1106, 1131
HphI	GGTGA	4 cut(s)	736, 1120, 1145, 1363
Hpy166II	GTNNAC	9 cut(s)	37, 271, 277, 442, 585, 855, 934, 1166, 1354
Hpy188III	TCNNGA	4 cut(s)	251, 622, 1013, 1277
Hpy8I	GTNNAC	9 cut(s)	37, 271, 277, 442, 585, 855, 934, 1166, 1354
Hpy99I	CGWCG	2 cut(s)	335, 1226
HpyCH4III	ACNGT	2 cut(s)	1036, 1170
HpyCH4IV	ACGT	5 cut(s)	89, 273, 330, 833, 936
HpyCH4V	TGCA	6 cut(s)	820, 903, 917, 1001, 1052, 1100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	952
HpyF3I	CTNAG	4 cut(s)	346, 448, 873, 983
HpySE526I	ACGT	5 cut(s)	89, 273, 330, 833, 936
Hsp92II	CATG	9 cut(s)	26, 193, 243, 308, 368, 625, 667, 861, 1361
HspAI	GCGC	1 cut(s)	1148
KspAI	GTTAAC	1 cut(s)	934
LmnI	GCTCC	4 cut(s)	61, 523, 649, 1147
Lsp1109I	GCAGC	2 cut(s)	664, 1013
LweI	GCATC	5 cut(s)	404, 673, 807, 904, 926
MaeI	CTAG	2 cut(s)	93, 1013
MaeII	ACGT	5 cut(s)	89, 273, 330, 833, 936
MaeIII	GTNAC	3 cut(s)	353, 1025, 1307
MbiI	CCGCTC	1 cut(s)	691
MboII	GAAGA	9 cut(s)	479, 533, 536, 630, 686, 765, 792, 826, 1344
MfeI	CAATTG	1 cut(s)	904
MflI	RGATCY	3 cut(s)	183, 844, 1313
MhlI	GDGCHC	1 cut(s)	611
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	9 cut(s)	229, 293, 387, 528, 564, 794, 904, 969, 1203
MluNI	TGGCCA	1 cut(s)	235
MlyI	GAGTC	2 cut(s)	248, 479
MmeI	TCCRAC	3 cut(s)	43, 858, 1233
Mox20I	TGGCCA	1 cut(s)	235
Mph1103I	ATGCAT	1 cut(s)	919
MroXI	GAANNNNTTC	1 cut(s)	1266
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	7 cut(s)	51, 491, 695, 869, 933, 1071, 1378
Msp20I	TGGCCA	1 cut(s)	235
MspA1I	CMGCKG	1 cut(s)	962
MspI	CCGG	3 cut(s)	97, 1106, 1131
MspR9I	CCNGG	5 cut(s)	395, 463, 509, 647, 722
MunI	CAATTG	1 cut(s)	904
MvaI	CCWGG	5 cut(s)	395, 463, 509, 647, 722
MwoI	GCNNNNNNNGC	1 cut(s)	952
NdeI	CATATG	1 cut(s)	1065
NlaIII	CATG	9 cut(s)	26, 193, 243, 308, 368, 625, 667, 861, 1361
NlaIV	GGNNCC	2 cut(s)	107, 525
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	3 cut(s)	26, 243, 861
PagI	TCATGA	1 cut(s)	621
PciI	ACATGT	2 cut(s)	22, 239
PcsI	WCGNNNNNNNCGW	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	1266
PfeI	GAWTC	6 cut(s)	15, 247, 287, 1009, 1115, 1184
PinAI	ACCGGT	2 cut(s)	1105, 1130
PkrI	GCNGC	2 cut(s)	654, 1003
PleI	GAGTC	2 cut(s)	248, 478
PpsI	GAGTC	2 cut(s)	248, 478
PscI	ACATGT	2 cut(s)	22, 239
Psp1406I	AACGTT	2 cut(s)	833, 936
Psp6I	CCWGG	5 cut(s)	393, 461, 507, 645, 720
PspGI	CCWGG	5 cut(s)	393, 461, 507, 645, 720
PspN4I	GGNNCC	2 cut(s)	107, 525
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	3 cut(s)	183, 844, 1313
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	4 cut(s)	11, 88, 501, 662
RsaNI	GTAC	4 cut(s)	10, 87, 500, 661
SaqAI	TTAA	7 cut(s)	51, 491, 695, 869, 933, 1071, 1378
SatI	GCNGC	2 cut(s)	653, 1002
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	248, 479
ScrFI	CCNGG	5 cut(s)	395, 463, 509, 647, 722
SduI	GDGCHC	1 cut(s)	611
SfaNI	GCATC	5 cut(s)	404, 673, 807, 904, 926
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	2 cut(s)	632, 656
SmoI	CTYRAG	2 cut(s)	632, 656
Sse9I	AATT	9 cut(s)	229, 293, 387, 528, 564, 794, 904, 969, 1203
SsiI	CCGC	4 cut(s)	154, 319, 689, 1232
SspMI	CTAG	2 cut(s)	93, 1013
StyD4I	CCNGG	5 cut(s)	393, 461, 507, 645, 720
StyI	CCWWGG	2 cut(s)	1179, 1317
TaaI	ACNGT	2 cut(s)	1036, 1170
TaiI	ACGT	5 cut(s)	92, 276, 333, 836, 939
TaqI	TCGA	3 cut(s)	1113, 1224, 1368
TaqII	GACCGA	2 cut(s)	123, 1301
TasI	AATT	9 cut(s)	229, 293, 387, 528, 564, 794, 904, 969, 1203
TatI	WGTACW	2 cut(s)	9, 660
TfiI	GAWTC	6 cut(s)	15, 247, 287, 1009, 1115, 1184
Tru1I	TTAA	7 cut(s)	51, 491, 695, 869, 933, 1071, 1378
Tru9I	TTAA	7 cut(s)	51, 491, 695, 869, 933, 1071, 1378
TscAI	CASTG	2 cut(s)	124, 1039
TseI	GCWGC	2 cut(s)	652, 1001
TspDTI	ATGAA	3 cut(s)	638, 1052, 1275
TspGWI	ACGGA	1 cut(s)	1210
TspRI	CASTG	2 cut(s)	124, 1039
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	1286
XapI	RAATTY	2 cut(s)	293, 387
XbaI	TCTAGA	1 cut(s)	1012
XceI	RCATGY	3 cut(s)	26, 243, 861
XmiI	GTMKAC	2 cut(s)	36, 276
XmnI	GAANNNNTTC	1 cut(s)	1266
XspI	CTAG	2 cut(s)	93, 1013
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.