Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003442

Physical Location & Seq

Genomic Coordinates Reverse (-)

13957316 .. 13961715

Gene Structure 4400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGAGTCTAATGCTTCCACGAAGTCTCCTGATTGTGAAAGAAGAACTCCTAGCAGGATTGGGGACAGATCAAACAGTGATGTTGTGGTGAGGATACGAACACAGGATACTCGGGATGAATGGTTTTATTGTCACTCCCACATCCTCATAGAAAAGAGCAAGTATTTCGCTGATCGCCTATCTGATAGTTGGCCAACTTGTCAAATTCTTGACTCACGCAACTGTGTTGAGGTTTACTGCCAGGATTCAGATTTTGACTACCATGTCAGTGTTCTCCGTCTTCTCTATGTCATAGTAGATGGCTCGGTTGATGACATGTGGCATGGTGTTAAAAATGCCCTTGGCATTCTCCAGGTGGCTGTCAAACTTGAATGTCCCCAAATCATCACTGCTTGTGTGAAGTACTTGGAAGCAGTTTCCTGGGAAGAGTCTGAGGAGGAGGAGATTTTAAAAATCATACCGCGCATGGGCCCACAAGCTGAACCTATTCTAGCCCGCCTCCAACCAGTCACTCAATCCGCCGTCATGGGAATATTTTTCTCAACCATCCGGTTTGCCACATCTTCCCCTCCTCCAATCATGAATGATCTCAAGACTTCAGCACAGGAGCAGCTTGAGTACATGCTAACAGAAGATGATGATTCCCCTCTCTTGGCAGCTGATGATGAGATAAAAACTGAGGTAAAAGAATGTGCAAAGAGACTCTTTGAAAGATTTAATAATCAGTTAGAAGCTTTGTTATGCGAAATGGAATTATTTTCTGATGGGGGAAAGATACTATCATTTCAATCACTTTTATCAGATTTATCATGGGCATGCCAGATTTTGACTAAGTTAGAAATTATGAGAGATTTTGTCTGCAATTGGACAGATGCATCAGATAAAATAGTTATGGTCATCAAGCAAGCAAGTCCCACATCTGAGTTAATTGAAACGAAGCTGAAGGTTATCGAAGTTGCAGCAAAGGTTCTCGAGGCAATTGGTTATGGCAATGTGATTTTGCCAACAGCAAAACGGCTTCATATGGTCAATGTATGGCTTCCGTTTGTGAGGGTTACAAAACCTCTTATCGATTCTGCAGTGGCAACTACTGGTGATGATGCGTCAGCATTTAAAATGGATGGTGAACTGTGGCAATCCTTAGAATCCACGTTTGTTTCCCTAATTCTTGCACTGCCATCCACTGAGCAGGCAGAGATATTGACTGAATGGTTAGGGAATGAGCATATTGAATATCCTGACCTGACTGAAGCATTTGAGGTGTGGTGTTACAGATCCAAGGTTGCAAAAAGAAGACTATCAGTGATAGCTGTGAACCATGACAAGATTGATCCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB

Protein Analysis

447

Amino Acids

50.57

Weight (kDa)

4.77

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	25 - 137	4.7e-06	BTB/POZ domain
BTB-POZ_ANK-like	PF25553	262 - 427	1.6e-07	BTB/POZ Ankyrin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05675 AT3G05675 AT3G05675
fragaria_vesca	FvH4_6g20360 FvH4_6g20360 FvH4_6g20360 FvH4_6g20360 FvH4_6g20360 FvH4_6g20360 FvH4_6g20360
malus_domestica	MD12G1049200.v1.1 MD14G1048100.v1.1
prunus_persica	Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1 Prupe.7G094200_v2.0.a1
pyrus_communis	pycom12g04410 pycom14g03960
rosa_chinensis	RchiOBHm_Chr3g0475971
rosa_laevigata	RLG00000023794
rosa_multiflora	Rmu_sc0000585.1_g000029
rosa_roxburghii	Rroxscaffold_6G00405570
rosa_rugosa	Rorug03G0152700
rosa_samantha	Rh3AG203500 Rh3BG233100 Rh3CG228800 Rh3DG229000
rosa_wichuraiana	Rw3G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	463
AciI	CCGC	3 cut(s)	461, 496, 519
AclWI	GGATC	2 cut(s)	1269, 1325
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	3 cut(s)	582, 962, 1269
AfaI	GTAC	2 cut(s)	404, 620
AfiI	CCNNNNNNNGG	2 cut(s)	467, 652
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	5 cut(s)	371, 710, 788, 932, 1232
AjnI	CCWGG	3 cut(s)	240, 351, 419
AluBI	AGCT	6 cut(s)	479, 613, 659, 734, 940, 1310
AluI	AGCT	6 cut(s)	479, 613, 659, 734, 940, 1310
Alw26I	GTCTC	2 cut(s)	30, 694
AlwI	GGATC	2 cut(s)	1269, 1325
Ama87I	CYCGRG	2 cut(s)	111, 971
AoxI	GGCC	2 cut(s)	191, 469
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	3 cut(s)	610, 656, 959
ApoI	RAATTY	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	469, 470
AsuHPI	GGTGA	3 cut(s)	100, 1106, 1136
AvaI	CYCGRG	2 cut(s)	111, 971
BaeGI	GKGCMC	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	473
BbsI	GAAGAC	2 cut(s)	272, 1300
BbvI	GCAGC	3 cut(s)	622, 668, 971
BccI	CCATC	5 cut(s)	293, 554, 758, 1115, 1186
BceAI	ACGGC	2 cut(s)	506, 1031
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	3 cut(s)	242, 353, 421
BciVI	GTATCC	2 cut(s)	87, 100
BcoDI	GTCTC	2 cut(s)	30, 694
BfaI	CTAG	2 cut(s)	51, 491
BfmI	CTRYAG	1 cut(s)	1077
BfuI	GTATCC	2 cut(s)	87, 100
BisI	GCNGC	3 cut(s)	611, 657, 960
BlsI	GCNGC	3 cut(s)	612, 658, 961
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	3 cut(s)	242, 353, 421
BmeT110I	CYCGRG	2 cut(s)	111, 971
BmgT120I	GGNCC	2 cut(s)	469, 470
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	3 cut(s)	242, 353, 421
BmsI	GCATC	3 cut(s)	862, 884, 1090
BpiI	GAAGAC	2 cut(s)	272, 1300
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	575, 635
Bsa29I	ATCGAT	1 cut(s)	1071
BsaJI	CCNNGG	3 cut(s)	340, 420, 1278
BsaWI	WCCGGW	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 652
Bse1I	ACTGG	2 cut(s)	506, 1096
Bse3DI	GCAATG	1 cut(s)	997
BseBI	CCWGG	3 cut(s)	242, 353, 421
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	3 cut(s)	340, 420, 1278
BseGI	GGATG	5 cut(s)	121, 141, 546, 1126, 1178
BseLI	CCNNNNNNNGG	2 cut(s)	467, 652
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	4 cut(s)	423, 669, 912, 1176
BseNI	ACTGG	2 cut(s)	506, 1096
BseRI	GAGGAG	4 cut(s)	449, 452, 455, 561
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	622, 668, 971
Bsh1236I	CGCG	1 cut(s)	463
BshFI	GGCC	2 cut(s)	193, 471
BshVI	ATCGAT	1 cut(s)	1071
BsiHKCI	CYCGRG	2 cut(s)	111, 971
BsiSI	CCGG	1 cut(s)	550
BslFI	GGGAC	3 cut(s)	77, 360, 897
BslI	CCNNNNNNNGG	2 cut(s)	467, 652
BsmAI	GTCTC	2 cut(s)	30, 694
BsmFI	GGGAC	3 cut(s)	77, 360, 897
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	193, 471
BsoBI	CYCGRG	2 cut(s)	111, 971
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	5 cut(s)	68, 172, 586, 1274, 1330
BspACI	CCGC	3 cut(s)	461, 496, 519
BspANI	GGCC	2 cut(s)	193, 471
BspCNI	CTCAG	4 cut(s)	424, 670, 913, 1177
BspDI	ATCGAT	1 cut(s)	1071
BspFNI	CGCG	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	471
BspMAI	CTGCAG	1 cut(s)	1081
BspPI	GGATC	2 cut(s)	1269, 1325
BsrDI	GCAATG	1 cut(s)	997
BsrI	ACTGG	2 cut(s)	506, 1096
BssECI	CCNNGG	3 cut(s)	340, 420, 1278
BssMI	GATC	5 cut(s)	68, 172, 586, 1274, 1330
BssT1I	CCWWGG	2 cut(s)	340, 1278
Bst2UI	CCWGG	3 cut(s)	242, 353, 421
Bst4CI	ACNGT	3 cut(s)	77, 224, 1131
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	496, 817, 906, 1191
BstDEI	CTNAG	6 cut(s)	432, 678, 831, 921, 1141, 1185
BstF5I	GGATG	5 cut(s)	121, 141, 546, 1126, 1178
BstFNI	CGCG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	5 cut(s)	71, 175, 589, 1277, 1333
BstMAI	GTCTC	2 cut(s)	30, 694
BstMBI	GATC	5 cut(s)	68, 172, 586, 1274, 1330
BstNI	CCWGG	3 cut(s)	242, 353, 421
BstNSI	RCATGY	3 cut(s)	319, 625, 819
BstSCI	CCNGG	3 cut(s)	240, 351, 419
BstSFI	CTRYAG	1 cut(s)	1077
BstSLI	GKGCMC	1 cut(s)	473
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	622, 668, 971
BstV2I	GAAGAC	2 cut(s)	272, 1300
BstX2I	RGATCY	1 cut(s)	1274
BstYI	RGATCY	1 cut(s)	1274
Bsu15I	ATCGAT	1 cut(s)	1071
BsuI	GTATCC	2 cut(s)	87, 100
BsuRI	GGCC	2 cut(s)	193, 471
BsuTUI	ATCGAT	1 cut(s)	1071
BtsCI	GGATG	5 cut(s)	121, 141, 546, 1126, 1178
BtsI	GCAGTG	3 cut(s)	387, 1086, 1172
BtsIMutI	CAGTG	7 cut(s)	82, 274, 387, 1086, 1172, 1182, 1308
Cac8I	GCNNGC	4 cut(s)	496, 817, 906, 1191
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	469, 470
ClaI	ATCGAT	1 cut(s)	1071
CseI	GACGC	1 cut(s)	1092
Csp6I	GTAC	2 cut(s)	403, 619
CviQI	GTAC	2 cut(s)	403, 619
DdeI	CTNAG	6 cut(s)	432, 678, 831, 921, 1141, 1185
DpnI	GATC	5 cut(s)	70, 174, 588, 1276, 1332
DpnII	GATC	5 cut(s)	68, 172, 586, 1274, 1330
DraI	TTTAAA	2 cut(s)	450, 1114
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	508
Eco130I	CCWWGG	2 cut(s)	340, 1278
Eco24I	GRGCYC	1 cut(s)	473
Eco57I	CTGAAG	3 cut(s)	582, 962, 1269
Eco88I	CYCGRG	2 cut(s)	111, 971
EcoRII	CCWGG	3 cut(s)	240, 351, 419
EcoT14I	CCWWGG	2 cut(s)	340, 1278
EcoT22I	ATGCAT	1 cut(s)	877
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	2 cut(s)	340, 1278
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	3 cut(s)	77, 360, 897
FauI	CCCGC	1 cut(s)	503
FauNDI	CATATG	1 cut(s)	1023
Fnu4HI	GCNGC	3 cut(s)	611, 657, 960
FokI	GGATG	5 cut(s)	128, 128, 533, 1133, 1165
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	611, 657, 960
FspBI	CTAG	2 cut(s)	51, 491
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	3 cut(s)	611, 657, 960
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	193, 471
HapII	CCGG	1 cut(s)	550
HgaI	GACGC	1 cut(s)	1092
HhaI	GCGC	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	732
HinfI	GANTC	8 cut(s)	5, 212, 245, 428, 641, 702, 1073, 1145
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	3 cut(s)	100, 1106, 1136
Hpy166II	GTNNAC	3 cut(s)	235, 1127, 1315
Hpy188I	TCNGA	7 cut(s)	184, 250, 433, 763, 802, 880, 922
Hpy188III	TCNNGA	7 cut(s)	29, 113, 209, 580, 592, 971, 1238
Hpy8I	GTNNAC	3 cut(s)	235, 1127, 1315
HpyAV	CCTTC	1 cut(s)	937
HpyCH4III	ACNGT	3 cut(s)	77, 224, 1131
HpyCH4IV	ACGT	1 cut(s)	1151
HpyCH4V	TGCA	7 cut(s)	695, 861, 875, 959, 1079, 1172, 1286
HpyF3I	CTNAG	6 cut(s)	432, 678, 831, 921, 1141, 1185
HpySE526I	ACGT	1 cut(s)	1151
HspAI	GCGC	1 cut(s)	463
Kzo9I	GATC	5 cut(s)	68, 172, 586, 1274, 1330
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	3 cut(s)	622, 668, 971
LweI	GCATC	3 cut(s)	862, 884, 1090
MaeI	CTAG	2 cut(s)	51, 491
MaeII	ACGT	1 cut(s)	1151
MaeIII	GTNAC	4 cut(s)	131, 508, 1054, 1268
MalI	GATC	5 cut(s)	70, 174, 588, 1276, 1332
MboI	GATC	5 cut(s)	68, 172, 586, 1274, 1330
MboII	GAAGA	6 cut(s)	54, 272, 437, 555, 644, 1305
MfeI	CAATTG	2 cut(s)	862, 978
MflI	RGATCY	1 cut(s)	1274
MhlI	GDGCHC	1 cut(s)	473
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	7 cut(s)	204, 752, 840, 862, 927, 978, 1164
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	4 cut(s)	14, 206, 437, 696
MmeI	TCCRAC	1 cut(s)	526
Mox20I	TGGCCA	1 cut(s)	193
Mph1103I	ATGCAT	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	6 cut(s)	330, 449, 717, 926, 1113, 1339
MslI	CAYNNNNRTG	2 cut(s)	267, 814
Msp20I	TGGCCA	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	3 cut(s)	242, 353, 421
MunI	CAATTG	2 cut(s)	862, 978
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	3 cut(s)	242, 353, 421
MvnI	CGCG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	1023
NdeII	GATC	5 cut(s)	68, 172, 586, 1274, 1330
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	2 cut(s)	131, 508
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	3 cut(s)	319, 625, 819
PaeI	GCATGC	1 cut(s)	819
PaeR7I	CTCGAG	1 cut(s)	971
PagI	TCATGA	1 cut(s)	579
PciI	ACATGT	1 cut(s)	315
PctI	GAATGC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	4 cut(s)	245, 641, 1073, 1145
PkrI	GCNGC	3 cut(s)	612, 658, 961
PleI	GAGTC	4 cut(s)	13, 206, 436, 696
PpsI	GAGTC	4 cut(s)	13, 206, 436, 696
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	3 cut(s)	240, 351, 419
PspGI	CCWGG	3 cut(s)	240, 351, 419
PspN4I	GGNNCC	1 cut(s)	471
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	2 cut(s)	469, 470
PsrI	GAACNNNNNNTAC	2 cut(s)	91, 123
PstI	CTGCAG	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	1274
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	2 cut(s)	404, 620
RsaNI	GTAC	2 cut(s)	403, 619
RseI	CAYNNNNRTG	2 cut(s)	267, 814
SaqAI	TTAA	6 cut(s)	330, 449, 717, 926, 1113, 1339
SatI	GCNGC	3 cut(s)	611, 657, 960
Sau3AI	GATC	5 cut(s)	68, 172, 586, 1274, 1330
Sau96I	GGNCC	2 cut(s)	469, 470
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	4 cut(s)	14, 206, 437, 696
ScrFI	CCNGG	3 cut(s)	242, 353, 421
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	3 cut(s)	862, 884, 1090
SfcI	CTRYAG	1 cut(s)	1077
Sfr274I	CTCGAG	1 cut(s)	971
SlaI	CTCGAG	1 cut(s)	971
SmiMI	CAYNNNNRTG	2 cut(s)	267, 814
SmlI	CTYRAG	3 cut(s)	590, 614, 971
SmoI	CTYRAG	3 cut(s)	590, 614, 971
SphI	GCATGC	1 cut(s)	819
Sse9I	AATT	7 cut(s)	204, 752, 840, 862, 927, 978, 1164
SsiI	CCGC	3 cut(s)	461, 496, 519
SspI	AATATT	1 cut(s)	534
SspMI	CTAG	2 cut(s)	51, 491
StyD4I	CCNGG	3 cut(s)	240, 351, 419
StyI	CCWWGG	2 cut(s)	340, 1278
TaaI	ACNGT	3 cut(s)	77, 224, 1131
TaiI	ACGT	1 cut(s)	1154
TaqI	TCGA	3 cut(s)	951, 972, 1071
TasI	AATT	7 cut(s)	204, 752, 840, 862, 927, 978, 1164
TatI	WGTACW	2 cut(s)	402, 618
TfiI	GAWTC	4 cut(s)	245, 641, 1073, 1145
Tru1I	TTAA	6 cut(s)	330, 449, 717, 926, 1113, 1339
Tru9I	TTAA	6 cut(s)	330, 449, 717, 926, 1113, 1339
TscAI	CASTG	7 cut(s)	82, 274, 394, 1086, 1179, 1189, 1308
TseFI	GTSAC	2 cut(s)	131, 508
TseI	GCWGC	3 cut(s)	610, 656, 959
Tsp45I	GTSAC	2 cut(s)	131, 508
TspDTI	ATGAA	3 cut(s)	132, 596, 1010
TspGWI	ACGGA	2 cut(s)	266, 1032
TspRI	CASTG	7 cut(s)	82, 274, 394, 1086, 1179, 1189, 1308
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	3 cut(s)	319, 625, 819
XhoI	CTCGAG	1 cut(s)	971
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	2 cut(s)	51, 491
ZrmI	AGTACT	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.