Rmu_sc0000585.1_g000029

BTB POZ domain-containing protein At3g05675-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000585.1
Physical Location & Seq
Forward (+)
104436 .. 106098
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000585.1_g000029.1.cds

Sequence Viewer

Length: 1323 bp
atggagtctcctaattgtgaaagaaggactcctagcaggattggggacagatcaaacagtgatgttgtggtgaggatacgaacacaggatgcccgggatgaatggttttattgtcactccaacatcctcatagaaaagagcaagtatttcgctgatcgcctctccgatagttggccaacttgtcaaattcttgactcgcgcaactgtgttgaggtttactgccaggattcagactttgactaccatgtcagtgttctccgtcttctctacgtcttagtagatggctcagttgatgacatgtgccatggtgttaaaaatgcccttggcattctccaggtggctgtcaagcttgaatgtccccaaatcatcactgcttgtgtgaagtacttggaagcagtctcctgggaagagtctgaggaggaggagatattaaaaatcataccgcgcatgggcccgcaagccgaacctattcttgaccgcctccaaccagtcactcaatctgccatcatgggaatttttttctcaaccatccggttcgccacatcttcccctcctccaatcatgaatgatctcaagacttcagcccaggagcagcttgagtacatgctaactgaagatgatgatgcccctcttttggcagctgatgatgagataaaatctgaggtaaaagaatgtgcaaagagactatttgaaagattcaattatcagttagaagctttgttatgcgaaatggaatcattttctgatgggggaaagatactatcatttcaatcgcttttatctgatttgtcatgggcatgccagattttaactaagttggaaattatgagggaatttgtctgcaattggacagatgcatcagataaaatagttatggtcgtcaagcaagcgagtccaacagccgagttaattgagacaaagcttaaggttattgaggttgcagcaaaggttctagaggcaataggttatggcactgtgattttgccaactgcaaaacggcttcatatggtcaatgtatggcttccgtttgtgagggttacaaaaccttttatcgattctgcagtggcagctactgatgatgatgctccggcatttaaaatggatggtgaactgtggcaatccttggaatccacatttgtttccctaattcttgcactgccatccactgagcaggcagagatattgactgaatggttacagaatgagcatattggatatcctgacctgactgaagcatttgaggtgtggtgttacagatccaaggttgcaaaaagaagactatcaatgattgctgtgaatcatgacaagatcggtacacattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

440

Amino Acids

49.92

Weight (kDa)

4.73

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccII CGCG 2 cut(s) 199, 445
AciI CCGC 3 cut(s) 443, 455, 478
AclWI GGATC 1 cut(s) 1251
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 3 cut(s) 186, 513, 833
AcuI CTGAAG 3 cut(s) 564, 633, 1251
AfaI GTAC 3 cut(s) 386, 602, 1315
AfiI CCNNNNNNNGG 3 cut(s) 171, 449, 634
AflII CTTAAG 1 cut(s) 923
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 4 cut(s) 353, 692, 700, 770
AjnI CCWGG 4 cut(s) 222, 333, 401, 585
AluBI AGCT 6 cut(s) 349, 595, 641, 716, 922, 1070
AluI AGCT 6 cut(s) 349, 595, 641, 716, 922, 1070
Alw26I GTCTC 4 cut(s) 12, 403, 676, 908
AlwI GGATC 1 cut(s) 1251
AlwNI CAGNNNCTG 1 cut(s) 1073
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 2 cut(s) 173, 451
ApaI GGGCCC 1 cut(s) 455
ApeKI GCWGC 4 cut(s) 592, 638, 941, 1067
ApoI RAATTY 3 cut(s) 186, 513, 833
Asp700I GAANNNNTTC 1 cut(s) 468
AspLEI GCGC 2 cut(s) 201, 447
AspS9I GGNCC 2 cut(s) 451, 452
AsuC2I CCSGG 2 cut(s) 94, 95
AsuHPI GGTGA 2 cut(s) 82, 1118
AvaI CYCGRG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 455
BalI TGGCCA 1 cut(s) 175
BanII GRGCYC 1 cut(s) 455
BbsI GAAGAC 2 cut(s) 254, 1282
BbvI GCAGC 4 cut(s) 604, 650, 953, 1079
BccI CCATC 6 cut(s) 275, 512, 536, 740, 1097, 1168
BceAI ACGGC 1 cut(s) 1013
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 4 cut(s) 224, 335, 403, 587
BciVI GTATCC 1 cut(s) 69
BcnI CCSGG 2 cut(s) 94, 95
BcoDI GTCTC 4 cut(s) 12, 403, 676, 908
BfaI CTAG 2 cut(s) 33, 953
BfmI CTRYAG 1 cut(s) 1059
BfrI CTTAAG 1 cut(s) 923
BfuI GTATCC 1 cut(s) 69
BisI GCNGC 4 cut(s) 593, 639, 942, 1068
BlsI GCNGC 4 cut(s) 594, 640, 943, 1069
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 6 cut(s) 94, 95, 224, 335, 403, 587
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 451, 452
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 6 cut(s) 94, 95, 224, 335, 403, 587
BmsI GCATC 5 cut(s) 79, 613, 844, 866, 1072
BpiI GAAGAC 2 cut(s) 254, 1282
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 557, 617
BpuMI CCSGG 2 cut(s) 94, 95
Bsa29I ATCGAT 1 cut(s) 1053
BsaJI CCNNGG 7 cut(s) 93, 304, 322, 402, 585, 1122, 1260
BsaWI WCCGGW 1 cut(s) 531
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 449, 634
Bse1I ACTGG 1 cut(s) 488
BseBI CCWGG 4 cut(s) 224, 335, 403, 587
BseCI ATCGAT 1 cut(s) 1053
BseDI CCNNGG 7 cut(s) 93, 304, 322, 402, 585, 1122, 1260
BseGI GGATG 6 cut(s) 94, 103, 123, 528, 1108, 1160
BseLI CCNNNNNNNGG 3 cut(s) 171, 449, 634
BseMII CTCAG 4 cut(s) 300, 405, 651, 1158
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 4 cut(s) 431, 434, 437, 543
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 4 cut(s) 604, 650, 953, 1079
Bsh1236I CGCG 2 cut(s) 199, 445
BshFI GGCC 2 cut(s) 175, 453
BshVI ATCGAT 1 cut(s) 1053
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 3 cut(s) 94, 532, 1088
BslFI GGGAC 2 cut(s) 59, 342
BslI CCNNNNNNNGG 3 cut(s) 171, 449, 634
BsmAI GTCTC 4 cut(s) 12, 403, 676, 908
BsmFI GGGAC 2 cut(s) 59, 342
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 2 cut(s) 175, 453
BsoBI CYCGRG 1 cut(s) 93
Bsp120I GGGCCC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 455
Bsp143I GATC 5 cut(s) 50, 154, 568, 1256, 1308
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 3 cut(s) 443, 455, 478
BspANI GGCC 2 cut(s) 175, 453
BspCNI CTCAG 4 cut(s) 299, 406, 652, 1159
BspDI ATCGAT 1 cut(s) 1053
BspFNI CGCG 2 cut(s) 199, 445
BspHI TCATGA 2 cut(s) 561, 1300
BspLI GGNNCC 1 cut(s) 453
BspMAI CTGCAG 1 cut(s) 1063
BspPI GGATC 1 cut(s) 1251
BspTI CTTAAG 1 cut(s) 923
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 7 cut(s) 93, 304, 322, 402, 585, 1122, 1260
BssMI GATC 5 cut(s) 50, 154, 568, 1256, 1308
BssT1I CCWWGG 4 cut(s) 304, 322, 1122, 1260
Bst2UI CCWGG 4 cut(s) 224, 335, 403, 587
Bst4CI ACNGT 4 cut(s) 59, 206, 976, 1113
Bst6I CTCTTC 1 cut(s) 402
BstAFI CTTAAG 1 cut(s) 923
BstC8I GCNNGC 5 cut(s) 455, 459, 799, 888, 1173
BstDEI CTNAG 6 cut(s) 274, 286, 414, 660, 813, 1167
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 6 cut(s) 94, 103, 123, 528, 1108, 1160
BstFNI CGCG 2 cut(s) 199, 445
BstHHI GCGC 2 cut(s) 201, 447
BstKTI GATC 5 cut(s) 53, 157, 571, 1259, 1311
BstMAI GTCTC 4 cut(s) 12, 403, 676, 908
BstMBI GATC 5 cut(s) 50, 154, 568, 1256, 1308
BstMWI GCNNNNNNNGC 1 cut(s) 1067
BstNI CCWGG 4 cut(s) 224, 335, 403, 587
BstNSI RCATGY 3 cut(s) 301, 607, 801
BstSCI CCNGG 6 cut(s) 92, 93, 222, 333, 401, 585
BstSFI CTRYAG 1 cut(s) 1059
BstSLI GKGCMC 1 cut(s) 455
BstUI CGCG 2 cut(s) 199, 445
BstV1I GCAGC 4 cut(s) 604, 650, 953, 1079
BstV2I GAAGAC 2 cut(s) 254, 1282
BstX2I RGATCY 1 cut(s) 1256
BstYI RGATCY 1 cut(s) 1256
Bsu15I ATCGAT 1 cut(s) 1053
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 175, 453
BsuTUI ATCGAT 1 cut(s) 1053
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 6 cut(s) 94, 103, 123, 528, 1108, 1160
BtsI GCAGTG 3 cut(s) 369, 1068, 1154
BtsIMutI CAGTG 7 cut(s) 64, 256, 369, 972, 1068, 1154, 1164
Cac8I GCNNGC 5 cut(s) 455, 459, 799, 888, 1173
CaiI CAGNNNCTG 1 cut(s) 1073
CciI TCATGA 2 cut(s) 561, 1300
CfoI GCGC 2 cut(s) 201, 447
Cfr13I GGNCC 2 cut(s) 451, 452
Cfr9I CCCGGG 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 1053
Csp6I GTAC 3 cut(s) 385, 601, 1314
CviQI GTAC 3 cut(s) 385, 601, 1314
DdeI CTNAG 6 cut(s) 274, 286, 414, 660, 813, 1167
DpnI GATC 5 cut(s) 52, 156, 570, 1258, 1310
DpnII GATC 5 cut(s) 50, 154, 568, 1256, 1308
DraI TTTAAA 1 cut(s) 1096
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 4 cut(s) 304, 322, 1122, 1260
Eco24I GRGCYC 1 cut(s) 455
Eco32I GATATC 1 cut(s) 1217
Eco57I CTGAAG 3 cut(s) 564, 633, 1251
Eco88I CYCGRG 1 cut(s) 93
EcoRII CCWGG 4 cut(s) 222, 333, 401, 585
EcoRV GATATC 1 cut(s) 1217
EcoT14I CCWWGG 4 cut(s) 304, 322, 1122, 1260
EcoT22I ATGCAT 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 455
ErhI CCWWGG 4 cut(s) 304, 322, 1122, 1260
FaqI GGGAC 2 cut(s) 59, 342
FauI CCCGC 1 cut(s) 462
FauNDI CATATG 1 cut(s) 1005
Fnu4HI GCNGC 4 cut(s) 593, 639, 942, 1068
FokI GGATG 6 cut(s) 101, 110, 110, 515, 1115, 1147
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 4 cut(s) 593, 639, 942, 1068
FspBI CTAG 2 cut(s) 33, 953
GlaI GCGC 2 cut(s) 200, 446
GluI GCNGC 4 cut(s) 593, 639, 942, 1068
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 2 cut(s) 175, 453
HapII CCGG 3 cut(s) 94, 532, 1088
HhaI GCGC 2 cut(s) 201, 447
Hin6I GCGC 2 cut(s) 199, 445
HinP1I GCGC 2 cut(s) 199, 445
HindIII AAGCTT 3 cut(s) 347, 714, 920
HpaII CCGG 3 cut(s) 94, 532, 1088
HphI GGTGA 2 cut(s) 82, 1118
Hpy166II GTNNAC 3 cut(s) 217, 1109, 1316
Hpy188I TCNGA 7 cut(s) 166, 232, 415, 661, 745, 784, 862
Hpy188III TCNNGA 7 cut(s) 191, 473, 562, 574, 953, 1220, 1301
Hpy8I GTNNAC 3 cut(s) 217, 1109, 1316
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 4 cut(s) 59, 206, 976, 1113
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 8 cut(s) 677, 843, 857, 941, 992, 1061, 1154, 1268
HpyF10VI GCNNNNNNNGC 1 cut(s) 1067
HpyF3I CTNAG 6 cut(s) 274, 286, 414, 660, 813, 1167
HpySE526I ACGT 1 cut(s) 270
HspAI GCGC 2 cut(s) 199, 445
Kzo9I GATC 5 cut(s) 50, 154, 568, 1256, 1308
LmnI GCTCC 2 cut(s) 589, 1090
Lsp1109I GCAGC 4 cut(s) 604, 650, 953, 1079
LweI GCATC 5 cut(s) 79, 613, 844, 866, 1072
MaeI CTAG 2 cut(s) 33, 953
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 5 cut(s) 113, 490, 1036, 1194, 1250
MalI GATC 5 cut(s) 52, 156, 570, 1258, 1310
MboI GATC 5 cut(s) 50, 154, 568, 1256, 1308
MboII GAAGA 5 cut(s) 254, 419, 537, 626, 1287
MfeI CAATTG 1 cut(s) 844
MflI RGATCY 1 cut(s) 1256
MhlI GDGCHC 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 9 cut(s) 13, 186, 513, 700, 822, 833, 844, 909, 1146
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 5 cut(s) 14, 22, 188, 419, 901
MmeI TCCRAC 4 cut(s) 144, 508, 798, 920
Mox20I TGGCCA 1 cut(s) 175
Mph1103I ATGCAT 1 cut(s) 859
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 1 cut(s) 175
MseI TTAA 6 cut(s) 312, 431, 809, 908, 924, 1095
MslI CAYNNNNRTG 2 cut(s) 249, 796
Msp20I TGGCCA 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 641
MspCI CTTAAG 1 cut(s) 923
MspI CCGG 3 cut(s) 94, 532, 1088
MspR9I CCNGG 6 cut(s) 94, 95, 224, 335, 403, 587
MunI CAATTG 1 cut(s) 844
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 4 cut(s) 224, 335, 403, 587
MvnI CGCG 2 cut(s) 199, 445
MwoI GCNNNNNNNGC 1 cut(s) 1067
NciI CCSGG 2 cut(s) 94, 95
NcoI CCATGG 1 cut(s) 304
NdeI CATATG 1 cut(s) 1005
NdeII GATC 5 cut(s) 50, 154, 568, 1256, 1308
NlaIV GGNNCC 1 cut(s) 453
NmeAIII GCCGAG 1 cut(s) 928
NmuCI GTSAC 2 cut(s) 113, 490
NsiI ATGCAT 1 cut(s) 859
NspI RCATGY 3 cut(s) 301, 607, 801
PaeI GCATGC 1 cut(s) 801
PagI TCATGA 2 cut(s) 561, 1300
PciI ACATGT 1 cut(s) 297
PctI GAATGC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 6 cut(s) 227, 696, 734, 1055, 1127, 1297
PkrI GCNGC 4 cut(s) 594, 640, 943, 1069
PleI GAGTC 5 cut(s) 13, 22, 188, 418, 900
PpsI GAGTC 5 cut(s) 13, 22, 188, 418, 900
PscI ACATGT 1 cut(s) 297
Psp6I CCWGG 4 cut(s) 222, 333, 401, 585
PspGI CCWGG 4 cut(s) 222, 333, 401, 585
PspN4I GGNNCC 1 cut(s) 453
PspOMI GGGCCC 1 cut(s) 451
PspPI GGNCC 2 cut(s) 451, 452
PstI CTGCAG 1 cut(s) 1063
PstNI CAGNNNCTG 1 cut(s) 1073
PsuI RGATCY 1 cut(s) 1256
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 3 cut(s) 386, 602, 1315
RsaNI GTAC 3 cut(s) 385, 601, 1314
RseI CAYNNNNRTG 2 cut(s) 249, 796
SaqAI TTAA 6 cut(s) 312, 431, 809, 908, 924, 1095
SatI GCNGC 4 cut(s) 593, 639, 942, 1068
Sau3AI GATC 5 cut(s) 50, 154, 568, 1256, 1308
Sau96I GGNCC 2 cut(s) 451, 452
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 5 cut(s) 14, 22, 188, 419, 901
ScrFI CCNGG 6 cut(s) 94, 95, 224, 335, 403, 587
SduI GDGCHC 1 cut(s) 455
SfaNI GCATC 5 cut(s) 79, 613, 844, 866, 1072
SfcI CTRYAG 1 cut(s) 1059
SmaI CCCGGG 1 cut(s) 95
SmiMI CAYNNNNRTG 2 cut(s) 249, 796
SmlI CTYRAG 3 cut(s) 572, 596, 923
SmoI CTYRAG 3 cut(s) 572, 596, 923
SphI GCATGC 1 cut(s) 801
Sse9I AATT 9 cut(s) 13, 186, 513, 700, 822, 833, 844, 909, 1146
SsiI CCGC 3 cut(s) 443, 455, 478
SspMI CTAG 2 cut(s) 33, 953
StyD4I CCNGG 6 cut(s) 92, 93, 222, 333, 401, 585
StyI CCWWGG 4 cut(s) 304, 322, 1122, 1260
TaaI ACNGT 4 cut(s) 59, 206, 976, 1113
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 1053
TasI AATT 9 cut(s) 13, 186, 513, 700, 822, 833, 844, 909, 1146
TatI WGTACW 2 cut(s) 384, 600
TfiI GAWTC 6 cut(s) 227, 696, 734, 1055, 1127, 1297
Tru1I TTAA 6 cut(s) 312, 431, 809, 908, 924, 1095
Tru9I TTAA 6 cut(s) 312, 431, 809, 908, 924, 1095
TscAI CASTG 7 cut(s) 64, 256, 376, 979, 1068, 1161, 1171
TseFI GTSAC 2 cut(s) 113, 490
TseI GCWGC 4 cut(s) 592, 638, 941, 1067
Tsp45I GTSAC 2 cut(s) 113, 490
TspDTI ATGAA 3 cut(s) 114, 578, 992
TspGWI ACGGA 2 cut(s) 248, 1014
TspMI CCCGGG 1 cut(s) 93
TspRI CASTG 7 cut(s) 64, 256, 376, 979, 1068, 1161, 1171
Vha464I CTTAAG 1 cut(s) 923
XapI RAATTY 3 cut(s) 186, 513, 833
XbaI TCTAGA 1 cut(s) 952
XceI RCATGY 3 cut(s) 301, 607, 801
XmaI CCCGGG 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 2 cut(s) 33, 953
ZrmI AGTACT 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.