Prupe.7G094200_v2.0.a1

BTB POZ domain-containing protein At3g05675-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0003442
Physical Location & Seq
Forward (+)
12679322 .. 12682463
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G094200.2

Sequence Viewer

Length: 1320 bp
ATGGAATCTCTTGTTTCTGAAACAAGGACTCCTATCAGGATTGGGGACCGATCAACCAGTGATGTTGTTGTGAGGATACGGACACAGGATGGGCGGGATGATTGGTTTTATTGTCACTCGCAGGTCCTCATAGAAAAGAGCAAGTATTTCGCTGATCGCCTCTCTGAAAATTGGCCAACATGTCAGATTCTTGACTCACGCAACTGCGTTGAGGTATACTGCCAAGAATCAGAATTTGACCACCATGTCAGTGTCCTCCGCCTTCTCTACAATGTAATAGATGGCTTCGTTGATGACATGTGGCATGGTGTTAAAAATGCCCTTGGAATTCTTCAGGTAGCTGTCAATCTTGGATGCCCACAAATCATAACTGCTTGTGTGGACTACTTAGAAGCAGTCCCCTGGGAAGAGTCTGAGGAGGAGGAGATTTTAAAAATCATACCACGGCTCGGAACACAAGTGGAGCCAATTCTTGCCCGTCTCCTACCAGTCAAACAATCAGCCATAATGGGAATTTTTTTCTCAACCATCCAATTTGCCACATCTTCCCCATCTCCAATCATGAATGATCTCAAGTCTTCAGCCCAGGAACAGCTTGAGTACATGCTAACCGAAGATGATGATGCCCCTCTCTTAGCAGCTGATGACGAGATAAAATCTGAGGTGAAAGATTGTGTGAAGAGACTATTTGAAAGATTTAATAATCTATTAGAAGCTTTATTATGTGAGATGGAATTATTTTCTGATGGAGGGAAGATGCAATCATTTCAATCACTTTTATCAGATCTGTCATGGGCATGTCAGATATTATGTAAGTTGGAAATTATGAGGGAACTTGTCTGCAACTGGACGGATGCATCAGATAAAATAGTTAAGGTTGTAAAGGAAGCAAGCCCAACAGCTGAATTGATTGAGACAAAGCTGAGGGTTATTGAGGTGGCGGCAAAGATTCTAGAGGCAATAGGTTACGGCACAGTCATTTTGCCCACTGCAAAACGGCTTCATATGGTGAAGGTGTGGCTTCCTTTTGTTAGGGTTGCGAAACCACTGATCGATTCTGTCACAACTGCCCGTGATGATGCTCCAACACTGAGAATGGATACTGAGCTGTGGCAATCCCTAGAATCCACATTTGTTTCCGTAATTCTTGCACTTCCATCAGCGGAGCAGGCGGAGATATTGACCGAATGGTTGGGAAATGAGCATATTCAATATCCTGACCTGACTGAGGCATTTGAGGTATGGTGTTACAGATCCAAGGTATCCAAAAGAAGACTATCATTTCTAGCGGTGAACCATGACAAGATCAATACATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

440

Amino Acids

49.98

Weight (kDa)

4.77

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 112
AccI GTMKAC 1 cut(s) 216
AciI CCGC 6 cut(s) 94, 259, 941, 1163, 1172, 1289
AclWI GGATC 1 cut(s) 1248
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 3 cut(s) 233, 327, 513
AcuI CTGAAG 2 cut(s) 317, 564
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 2 cut(s) 449, 1228
AflIII ACRYGT 2 cut(s) 179, 297
AgsI TTSAA 3 cut(s) 692, 770, 1211
AjnI CCWGG 2 cut(s) 401, 585
AluBI AGCT 7 cut(s) 341, 595, 641, 716, 902, 922, 1108
AluI AGCT 7 cut(s) 341, 595, 641, 716, 902, 922, 1108
Alw26I GTCTC 3 cut(s) 485, 676, 908
AlwI GGATC 1 cut(s) 1248
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 638
ApoI RAATTY 3 cut(s) 233, 327, 513
AspS9I GGNCC 2 cut(s) 46, 124
AsuHPI GGTGA 3 cut(s) 676, 1021, 1303
AvaII GGWCC 2 cut(s) 46, 124
BalI TGGCCA 1 cut(s) 175
BbsI GAAGAC 2 cut(s) 570, 1279
BbvCI CCTCAGC 1 cut(s) 923
BbvI GCAGC 1 cut(s) 650
BccI CCATC 7 cut(s) 83, 275, 536, 559, 724, 740, 1165
BceAI ACGGC 3 cut(s) 461, 985, 1013
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 2 cut(s) 403, 587
BciVI GTATCC 3 cut(s) 69, 1093, 1273
BcoDI GTCTC 3 cut(s) 485, 676, 908
BfaI CTAG 3 cut(s) 953, 1121, 1286
BfuAI ACCTGC 1 cut(s) 112
BfuI GTATCC 3 cut(s) 69, 1093, 1273
BglII AGATCT 1 cut(s) 784
BisI GCNGC 2 cut(s) 639, 942
BlsI GCNGC 2 cut(s) 640, 943
Bme1390I CCNGG 2 cut(s) 403, 587
Bme18I GGWCC 2 cut(s) 46, 124
BmgT120I GGNCC 2 cut(s) 46, 124
BmiI GGNNCC 2 cut(s) 47, 465
BmrFI CCNGG 2 cut(s) 403, 587
BmsI GCATC 6 cut(s) 344, 613, 747, 844, 866, 1069
BpiI GAAGAC 2 cut(s) 570, 1279
Bpu10I CCTNAGC 1 cut(s) 923
BpuEI CTTGAG 2 cut(s) 557, 617
Bsa29I ATCGAT 1 cut(s) 1053
BsaJI CCNNGG 6 cut(s) 322, 401, 402, 443, 585, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 1228
Bse1I ACTGG 3 cut(s) 57, 488, 851
BseBI CCWGG 2 cut(s) 403, 587
BseCI ATCGAT 1 cut(s) 1053
BseDI CCNNGG 6 cut(s) 322, 401, 402, 443, 585, 1257
BseGI GGATG 5 cut(s) 94, 103, 359, 528, 859
BseLI CCNNNNNNNGG 2 cut(s) 449, 1228
BseMII CTCAG 6 cut(s) 405, 651, 914, 1082, 1095, 1218
BseNI ACTGG 3 cut(s) 57, 488, 851
BseRI GAGGAG 3 cut(s) 431, 434, 437
BseXI GCAGC 1 cut(s) 650
BshFI GGCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 1053
BslFI GGGAC 2 cut(s) 59, 383
BslI CCNNNNNNNGG 2 cut(s) 449, 1228
BsmAI GTCTC 3 cut(s) 485, 676, 908
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 59, 383
BsnI GGCC 1 cut(s) 175
Bsp143I GATC 7 cut(s) 50, 154, 568, 784, 1050, 1253, 1305
BspACI CCGC 6 cut(s) 94, 259, 941, 1163, 1172, 1289
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 6 cut(s) 406, 652, 915, 1083, 1096, 1219
BspDI ATCGAT 1 cut(s) 1053
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 47, 465
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 1248
BsrI ACTGG 3 cut(s) 57, 488, 851
BssECI CCNNGG 6 cut(s) 322, 401, 402, 443, 585, 1257
BssMI GATC 7 cut(s) 50, 154, 568, 784, 1050, 1253, 1305
BssNAI GTATAC 1 cut(s) 217
BssT1I CCWWGG 2 cut(s) 322, 1257
Bst1107I GTATAC 1 cut(s) 217
Bst2UI CCWGG 2 cut(s) 403, 587
Bst4CI ACNGT 1 cut(s) 976
Bst6I CTCTTC 2 cut(s) 402, 674
BstC8I GCNNGC 2 cut(s) 892, 1170
BstDEI CTNAG 8 cut(s) 388, 414, 634, 660, 923, 1091, 1104, 1227
BstDSI CCRYGG 1 cut(s) 443
BstENI CCTNNNNNAGG 1 cut(s) 1226
BstF5I GGATG 5 cut(s) 94, 103, 359, 528, 859
BstKTI GATC 7 cut(s) 53, 157, 571, 787, 1053, 1256, 1308
BstMAI GTCTC 3 cut(s) 485, 676, 908
BstMBI GATC 7 cut(s) 50, 154, 568, 784, 1050, 1253, 1305
BstMWI GCNNNNNNNGC 1 cut(s) 1169
BstNI CCWGG 2 cut(s) 403, 587
BstNSI RCATGY 4 cut(s) 183, 301, 607, 801
BstSCI CCNGG 2 cut(s) 401, 585
BstV1I GCAGC 1 cut(s) 650
BstV2I GAAGAC 2 cut(s) 570, 1279
BstX2I RGATCY 2 cut(s) 784, 1253
BstYI RGATCY 2 cut(s) 784, 1253
BstZ17I GTATAC 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 1053
BsuI GTATCC 3 cut(s) 69, 1093, 1273
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 1053
BtgI CCRYGG 1 cut(s) 443
BtsCI GGATG 5 cut(s) 94, 103, 359, 528, 859
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 5 cut(s) 64, 256, 987, 1046, 1088
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 892, 1170
CciI TCATGA 1 cut(s) 561
Cfr13I GGNCC 2 cut(s) 46, 124
ClaI ATCGAT 1 cut(s) 1053
Csp6I GTAC 1 cut(s) 601
CviAII CATG 9 cut(s) 180, 245, 298, 305, 562, 604, 792, 798, 1298
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 8 cut(s) 388, 414, 634, 660, 923, 1091, 1104, 1227
DpnI GATC 7 cut(s) 52, 156, 570, 786, 1052, 1255, 1307
DpnII GATC 7 cut(s) 50, 154, 568, 784, 1050, 1253, 1305
DraI TTTAAA 1 cut(s) 432
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 2 cut(s) 402, 674
EarI CTCTTC 2 cut(s) 402, 674
EciI GGCGGA 2 cut(s) 248, 1187
Eco130I CCWWGG 2 cut(s) 322, 1257
Eco47I GGWCC 2 cut(s) 46, 124
Eco57I CTGAAG 2 cut(s) 317, 564
EcoNI CCTNNNNNAGG 1 cut(s) 1226
EcoO109I RGGNCCY 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 401, 585
EcoT14I CCWWGG 2 cut(s) 322, 1257
EcoT22I ATGCAT 1 cut(s) 859
ErhI CCWWGG 2 cut(s) 322, 1257
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 9 cut(s) 183, 248, 301, 308, 565, 607, 795, 801, 1301
FaqI GGGAC 2 cut(s) 59, 383
FatI CATG 9 cut(s) 179, 244, 297, 304, 561, 603, 791, 797, 1297
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 1005
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 639, 942
FokI GGATG 5 cut(s) 101, 110, 366, 515, 866
Fsp4HI GCNGC 2 cut(s) 639, 942
FspBI CTAG 3 cut(s) 953, 1121, 1286
GluI GCNGC 2 cut(s) 639, 942
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 9 cut(s) 183, 248, 301, 308, 565, 607, 795, 801, 1301
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 9 cut(s) 5, 28, 187, 194, 227, 410, 949, 1055, 1124
HphI GGTGA 3 cut(s) 676, 1021, 1303
Hpy166II GTNNAC 3 cut(s) 217, 382, 1294
Hpy188III TCNNGA 5 cut(s) 37, 191, 562, 953, 1217
Hpy8I GTNNAC 3 cut(s) 217, 382, 1294
HpyAV CCTTC 2 cut(s) 272, 1006
HpyCH4III ACNGT 1 cut(s) 976
HpyCH4V TGCA 5 cut(s) 760, 843, 857, 992, 1151
HpyF10VI GCNNNNNNNGC 1 cut(s) 1169
HpyF3I CTNAG 8 cut(s) 388, 414, 634, 660, 923, 1091, 1104, 1227
Hsp92II CATG 9 cut(s) 183, 248, 301, 308, 565, 607, 795, 801, 1301
Kzo9I GATC 7 cut(s) 50, 154, 568, 784, 1050, 1253, 1305
LmnI GCTCC 3 cut(s) 463, 1087, 1165
Lsp1109I GCAGC 1 cut(s) 650
LweI GCATC 6 cut(s) 344, 613, 747, 844, 866, 1069
MaeI CTAG 3 cut(s) 953, 1121, 1286
MaeIII GTNAC 4 cut(s) 113, 965, 1060, 1247
MalI GATC 7 cut(s) 52, 156, 570, 786, 1052, 1255, 1307
MboI GATC 7 cut(s) 50, 154, 568, 784, 1050, 1253, 1305
MboII GAAGA 8 cut(s) 323, 419, 537, 570, 626, 691, 766, 1284
MflI RGATCY 2 cut(s) 784, 1253
MlsI TGGCCA 1 cut(s) 175
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 3 cut(s) 22, 188, 419
MmeI TCCRAC 2 cut(s) 798, 1109
Mox20I TGGCCA 1 cut(s) 175
Mph1103I ATGCAT 1 cut(s) 859
MscI TGGCCA 1 cut(s) 175
MseI TTAA 5 cut(s) 312, 431, 699, 873, 1318
MslI CAYNNNNRTG 2 cut(s) 249, 796
Msp20I TGGCCA 1 cut(s) 175
MspA1I CMGCKG 3 cut(s) 641, 902, 1163
MspR9I CCNGG 2 cut(s) 403, 587
MvaI CCWGG 2 cut(s) 403, 587
MwoI GCNNNNNNNGC 1 cut(s) 1169
NdeI CATATG 1 cut(s) 1005
NdeII GATC 7 cut(s) 50, 154, 568, 784, 1050, 1253, 1305
NlaIII CATG 9 cut(s) 183, 248, 301, 308, 565, 607, 795, 801, 1301
NlaIV GGNNCC 2 cut(s) 47, 465
NmuCI GTSAC 2 cut(s) 113, 1060
NsiI ATGCAT 1 cut(s) 859
NspI RCATGY 4 cut(s) 183, 301, 607, 801
PagI TCATGA 1 cut(s) 561
PasI CCCWGGG 1 cut(s) 402
PciI ACATGT 2 cut(s) 179, 297
PfeI GAWTC 6 cut(s) 5, 187, 227, 949, 1055, 1124
PkrI GCNGC 2 cut(s) 640, 943
PleI GAGTC 3 cut(s) 22, 188, 418
PpsI GAGTC 3 cut(s) 22, 188, 418
PpuMI RGGWCCY 1 cut(s) 124
PscI ACATGT 2 cut(s) 179, 297
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 401, 585
PspGI CCWGG 2 cut(s) 401, 585
PspN4I GGNNCC 2 cut(s) 47, 465
PspPI GGNCC 2 cut(s) 46, 124
PspPPI RGGWCCY 1 cut(s) 124
PsuI RGATCY 2 cut(s) 784, 1253
PvuII CAGCTG 2 cut(s) 641, 902
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 2 cut(s) 249, 796
SaqAI TTAA 5 cut(s) 312, 431, 699, 873, 1318
SatI GCNGC 2 cut(s) 639, 942
Sau3AI GATC 7 cut(s) 50, 154, 568, 784, 1050, 1253, 1305
Sau96I GGNCC 2 cut(s) 46, 124
SchI GAGTC 3 cut(s) 22, 188, 419
ScrFI CCNGG 2 cut(s) 403, 587
SfaNI GCATC 6 cut(s) 344, 613, 747, 844, 866, 1069
SinI GGWCC 2 cut(s) 46, 124
SmiMI CAYNNNNRTG 2 cut(s) 249, 796
SmlI CTYRAG 2 cut(s) 572, 596
SmoI CTYRAG 2 cut(s) 572, 596
SsiI CCGC 6 cut(s) 94, 259, 941, 1163, 1172, 1289
SspMI CTAG 3 cut(s) 953, 1121, 1286
StyD4I CCNGG 2 cut(s) 401, 585
StyI CCWWGG 2 cut(s) 322, 1257
TaaI ACNGT 1 cut(s) 976
TaqI TCGA 1 cut(s) 1053
TaqII GACCGA 2 cut(s) 63, 1199
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 944
TfiI GAWTC 6 cut(s) 5, 187, 227, 949, 1055, 1124
Tru1I TTAA 5 cut(s) 312, 431, 699, 873, 1318
Tru9I TTAA 5 cut(s) 312, 431, 699, 873, 1318
TscAI CASTG 5 cut(s) 64, 256, 994, 1053, 1095
TseFI GTSAC 2 cut(s) 113, 1060
TseI GCWGC 1 cut(s) 638
Tsp45I GTSAC 2 cut(s) 113, 1060
TspDTI ATGAA 2 cut(s) 578, 992
TspGWI ACGGA 3 cut(s) 94, 866, 1129
TspRI CASTG 5 cut(s) 64, 256, 994, 1053, 1095
VpaK11BI GGWCC 2 cut(s) 46, 124
XagI CCTNNNNNAGG 1 cut(s) 1226
XapI RAATTY 3 cut(s) 233, 327, 513
XbaI TCTAGA 1 cut(s) 952
XceI RCATGY 4 cut(s) 183, 301, 607, 801
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 3 cut(s) 953, 1121, 1286
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.