Rh3AG203500

BTB POZ domain-containing protein At3g05675-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
20128828 .. 20131975
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG203500.1

Sequence Viewer

Length: 1347 bp
ATGTCTATAGTGTGTAATGCTTCAATGGAGTCTCCTAATTGTGAAAGAAGGATTCCTAGCAGGATTGGGGACAGATCAAACAGTGATGTTGTGGTGAGGATACGAACACAGGATGCCCGGGATGAATGGTTTTATTGTCACTCCAACATCCTCATAGAAAAGAGCAAGTATTTCGCTGATCGCCTCTCCGATAGTTGGCCAACTTGTCAAATTCTTGACTCGCGCAACTGTGTTGAGGTTTACTGCCAGGATTCAGACTTTGACTACCATGTCAGTGTTCTCCGTCTTCTCTACGTCTTAGTAGATGGCTCAGTTGATGACATGTGCCATGGTGTTAAAAATGCCCTTGGCATTCTCCAGGTGGCTGTCAAGCTTGAATGTCCCCAAATCATCACTGCTTGTGTGAAGTACTTGGAAGCAGTCTCCTGGGAAGAGTCTGAGGAGGAGGAGATATTAAAAATCATACCGCGCATGGGCCCGCAAGCCGAACCTATTCTTGACCGCCTCCAACCAGTCACTCAATCTGCCATCATGGGAATTTTTTTCTCAACCATCCGGTTCGCCACATCTTCCCCTCCTCCAATCATGAATGATCTCAAGACTTCAGCCCAGGAGCAGCTTGAGTACATGCTAACTGAAGATGATGATGCCCCTCTTTTGGCAGCTGATGATGAGATAAAGTCTGAGGTAAAAGAATGTGCAAAGAGACTATTTGAAAGATTCAATTATCAGTTAGAAGCTTTGTTATGCGAAATGGAATCATTTTCTGATGGGGGAAAGATACTATCATTTCAATCGCTTTTATCAGATTTGTCATGGGCATGCCAGATTTTAACTAAGTTGGAAATTATGAGGGAATTTGTCTGCAATTGGACAGATGCATCAGATAAAATAGTTATGGTCGTCAAGCAAGCGAGTCCTACAGCTGAGTTAATTGAGACAAAGCTTAAGGTTATTGAGGTTGCAGCAAAGGTTCTAGAGGCAATAGGTTATGGCACTGTGATTTTGCCAACTGCAAAACGGCTTCATATGGTCAATGTATGGCTTCCGTTTGTGAGGGTTACAAAACCTTTTATCGATTCTGCAGTGGCAGCTACTGATGATGATGCTCCGGCATTTAAAATGGATGGTGAACTGTGGCAATCCTTGGAATCCACATTTGTTTCCCTAATTCTTGCACTGCCATCCACTGAGCAGGCAGAGATATTGACTGAATGGTTACAGAATGAGCATATTGGATATCCTGACCTGACTGAAGCATTTGAGGTGTGGTGTTACAGATCCAAGGTTGCAAAAAGAAGACTATCAATGATTGCTGTGAATCATGACAAGATCGGTACACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

448

Amino Acids

50.73

Weight (kDa)

4.73

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 27 - 139 3.4e-06 BTB/POZ domain
BTB-POZ_ANK-like PF25553 267 - 429 1.8e-06 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AccII CGCG 2 cut(s) 223, 469
AciI CCGC 3 cut(s) 467, 479, 502
AclWI GGATC 1 cut(s) 1275
AcoI YGGCCR 1 cut(s) 197
AcsI RAATTY 3 cut(s) 210, 537, 857
AcuI CTGAAG 3 cut(s) 588, 657, 1275
AfaI GTAC 3 cut(s) 410, 626, 1339
AfiI CCNNNNNNNGG 3 cut(s) 195, 473, 658
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 5 cut(s) 24, 377, 716, 724, 794
AjnI CCWGG 4 cut(s) 246, 357, 425, 609
AluBI AGCT 7 cut(s) 373, 619, 665, 740, 926, 946, 1094
AluI AGCT 7 cut(s) 373, 619, 665, 740, 926, 946, 1094
Alw26I GTCTC 4 cut(s) 36, 427, 700, 932
AlwI GGATC 1 cut(s) 1275
AlwNI CAGNNNCTG 1 cut(s) 1097
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 2 cut(s) 197, 475
ApaI GGGCCC 1 cut(s) 479
ApeKI GCWGC 4 cut(s) 616, 662, 965, 1091
ApoI RAATTY 3 cut(s) 210, 537, 857
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 2 cut(s) 225, 471
AspS9I GGNCC 2 cut(s) 475, 476
AsuC2I CCSGG 2 cut(s) 118, 119
AsuHPI GGTGA 2 cut(s) 106, 1142
AvaI CYCGRG 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 479
BalI TGGCCA 1 cut(s) 199
BanII GRGCYC 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 278, 1306
BbvI GCAGC 4 cut(s) 628, 674, 977, 1103
BccI CCATC 6 cut(s) 299, 536, 560, 764, 1121, 1192
BceAI ACGGC 1 cut(s) 1037
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 4 cut(s) 248, 359, 427, 611
BciVI GTATCC 1 cut(s) 93
BcnI CCSGG 2 cut(s) 118, 119
BcoDI GTCTC 4 cut(s) 36, 427, 700, 932
BfaI CTAG 2 cut(s) 57, 977
BfmI CTRYAG 3 cut(s) 6, 921, 1083
BfrI CTTAAG 1 cut(s) 947
BfuI GTATCC 1 cut(s) 93
BisI GCNGC 4 cut(s) 617, 663, 966, 1092
BlsI GCNGC 4 cut(s) 618, 664, 967, 1093
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 6 cut(s) 118, 119, 248, 359, 427, 611
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 475, 476
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 6 cut(s) 118, 119, 248, 359, 427, 611
BmsI GCATC 5 cut(s) 103, 637, 868, 890, 1096
BpiI GAAGAC 2 cut(s) 278, 1306
BpmI CTGGAG 1 cut(s) 341
BpuEI CTTGAG 2 cut(s) 581, 641
BpuMI CCSGG 2 cut(s) 118, 119
Bsa29I ATCGAT 1 cut(s) 1077
BsaJI CCNNGG 7 cut(s) 117, 328, 346, 426, 609, 1146, 1284
BsaWI WCCGGW 1 cut(s) 555
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 473, 658
Bse1I ACTGG 1 cut(s) 512
BseBI CCWGG 4 cut(s) 248, 359, 427, 611
BseCI ATCGAT 1 cut(s) 1077
BseDI CCNNGG 7 cut(s) 117, 328, 346, 426, 609, 1146, 1284
BseGI GGATG 6 cut(s) 118, 127, 147, 552, 1132, 1184
BseLI CCNNNNNNNGG 3 cut(s) 195, 473, 658
BseMII CTCAG 5 cut(s) 324, 429, 675, 918, 1182
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 4 cut(s) 455, 458, 461, 567
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 4 cut(s) 628, 674, 977, 1103
Bsh1236I CGCG 2 cut(s) 223, 469
BshFI GGCC 2 cut(s) 199, 477
BshVI ATCGAT 1 cut(s) 1077
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 3 cut(s) 118, 556, 1112
BslFI GGGAC 2 cut(s) 83, 366
BslI CCNNNNNNNGG 3 cut(s) 195, 473, 658
BsmAI GTCTC 4 cut(s) 36, 427, 700, 932
BsmFI GGGAC 2 cut(s) 83, 366
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 2 cut(s) 199, 477
BsoBI CYCGRG 1 cut(s) 117
Bsp120I GGGCCC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 5 cut(s) 74, 178, 592, 1280, 1332
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 3 cut(s) 467, 479, 502
BspANI GGCC 2 cut(s) 199, 477
BspCNI CTCAG 5 cut(s) 323, 430, 676, 919, 1183
BspDI ATCGAT 1 cut(s) 1077
BspFNI CGCG 2 cut(s) 223, 469
BspHI TCATGA 2 cut(s) 585, 1324
BspLI GGNNCC 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 1 cut(s) 1275
BspTI CTTAAG 1 cut(s) 947
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 7 cut(s) 117, 328, 346, 426, 609, 1146, 1284
BssMI GATC 5 cut(s) 74, 178, 592, 1280, 1332
BssT1I CCWWGG 4 cut(s) 328, 346, 1146, 1284
Bst2UI CCWGG 4 cut(s) 248, 359, 427, 611
Bst4CI ACNGT 4 cut(s) 83, 230, 1000, 1137
Bst6I CTCTTC 1 cut(s) 426
BstAFI CTTAAG 1 cut(s) 947
BstC8I GCNNGC 5 cut(s) 479, 483, 823, 912, 1197
BstDEI CTNAG 7 cut(s) 298, 310, 438, 684, 837, 927, 1191
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 6 cut(s) 118, 127, 147, 552, 1132, 1184
BstFNI CGCG 2 cut(s) 223, 469
BstHHI GCGC 2 cut(s) 225, 471
BstKTI GATC 5 cut(s) 77, 181, 595, 1283, 1335
BstMAI GTCTC 4 cut(s) 36, 427, 700, 932
BstMBI GATC 5 cut(s) 74, 178, 592, 1280, 1332
BstMWI GCNNNNNNNGC 1 cut(s) 1091
BstNI CCWGG 4 cut(s) 248, 359, 427, 611
BstNSI RCATGY 3 cut(s) 325, 631, 825
BstSCI CCNGG 6 cut(s) 116, 117, 246, 357, 425, 609
BstSFI CTRYAG 3 cut(s) 6, 921, 1083
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 2 cut(s) 223, 469
BstV1I GCAGC 4 cut(s) 628, 674, 977, 1103
BstV2I GAAGAC 2 cut(s) 278, 1306
BstX2I RGATCY 1 cut(s) 1280
BstYI RGATCY 1 cut(s) 1280
Bsu15I ATCGAT 1 cut(s) 1077
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 2 cut(s) 199, 477
BsuTUI ATCGAT 1 cut(s) 1077
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 6 cut(s) 118, 127, 147, 552, 1132, 1184
BtsI GCAGTG 3 cut(s) 393, 1092, 1178
BtsIMutI CAGTG 7 cut(s) 88, 280, 393, 996, 1092, 1178, 1188
Cac8I GCNNGC 5 cut(s) 479, 483, 823, 912, 1197
CaiI CAGNNNCTG 1 cut(s) 1097
CciI TCATGA 2 cut(s) 585, 1324
CfoI GCGC 2 cut(s) 225, 471
Cfr13I GGNCC 2 cut(s) 475, 476
Cfr9I CCCGGG 1 cut(s) 117
ClaI ATCGAT 1 cut(s) 1077
Csp6I GTAC 3 cut(s) 409, 625, 1338
CviQI GTAC 3 cut(s) 409, 625, 1338
DdeI CTNAG 7 cut(s) 298, 310, 438, 684, 837, 927, 1191
DpnI GATC 5 cut(s) 76, 180, 594, 1282, 1334
DpnII GATC 5 cut(s) 74, 178, 592, 1280, 1332
DraI TTTAAA 1 cut(s) 1120
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 4 cut(s) 328, 346, 1146, 1284
Eco24I GRGCYC 1 cut(s) 479
Eco32I GATATC 1 cut(s) 1241
Eco57I CTGAAG 3 cut(s) 588, 657, 1275
Eco88I CYCGRG 1 cut(s) 117
EcoRII CCWGG 4 cut(s) 246, 357, 425, 609
EcoRV GATATC 1 cut(s) 1241
EcoT14I CCWWGG 4 cut(s) 328, 346, 1146, 1284
EcoT22I ATGCAT 1 cut(s) 883
EcoT38I GRGCYC 1 cut(s) 479
ErhI CCWWGG 4 cut(s) 328, 346, 1146, 1284
FaqI GGGAC 2 cut(s) 83, 366
FauI CCCGC 1 cut(s) 486
FauNDI CATATG 1 cut(s) 1029
Fnu4HI GCNGC 4 cut(s) 617, 663, 966, 1092
FokI GGATG 6 cut(s) 125, 134, 134, 539, 1139, 1171
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 4 cut(s) 617, 663, 966, 1092
FspBI CTAG 2 cut(s) 57, 977
GlaI GCGC 2 cut(s) 224, 470
GluI GCNGC 4 cut(s) 617, 663, 966, 1092
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 199, 477
HapII CCGG 3 cut(s) 118, 556, 1112
HhaI GCGC 2 cut(s) 225, 471
Hin6I GCGC 2 cut(s) 223, 469
HinP1I GCGC 2 cut(s) 223, 469
HindIII AAGCTT 3 cut(s) 371, 738, 944
HpaII CCGG 3 cut(s) 118, 556, 1112
HphI GGTGA 2 cut(s) 106, 1142
Hpy166II GTNNAC 3 cut(s) 241, 1133, 1340
Hpy188I TCNGA 7 cut(s) 190, 256, 439, 685, 769, 808, 886
Hpy188III TCNNGA 7 cut(s) 215, 497, 586, 598, 977, 1244, 1325
Hpy8I GTNNAC 3 cut(s) 241, 1133, 1340
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 4 cut(s) 83, 230, 1000, 1137
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 8 cut(s) 701, 867, 881, 965, 1016, 1085, 1178, 1292
HpyF10VI GCNNNNNNNGC 1 cut(s) 1091
HpyF3I CTNAG 7 cut(s) 298, 310, 438, 684, 837, 927, 1191
HpySE526I ACGT 1 cut(s) 294
HspAI GCGC 2 cut(s) 223, 469
Kzo9I GATC 5 cut(s) 74, 178, 592, 1280, 1332
LmnI GCTCC 2 cut(s) 613, 1114
Lsp1109I GCAGC 4 cut(s) 628, 674, 977, 1103
LweI GCATC 5 cut(s) 103, 637, 868, 890, 1096
MaeI CTAG 2 cut(s) 57, 977
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 5 cut(s) 137, 514, 1060, 1218, 1274
MalI GATC 5 cut(s) 76, 180, 594, 1282, 1334
MboI GATC 5 cut(s) 74, 178, 592, 1280, 1332
MboII GAAGA 5 cut(s) 278, 443, 561, 650, 1311
MfeI CAATTG 1 cut(s) 868
MflI RGATCY 1 cut(s) 1280
MhlI GDGCHC 1 cut(s) 479
MlsI TGGCCA 1 cut(s) 199
MluCI AATT 9 cut(s) 37, 210, 537, 724, 846, 857, 868, 933, 1170
MluNI TGGCCA 1 cut(s) 199
MlyI GAGTC 4 cut(s) 38, 212, 443, 925
MmeI TCCRAC 3 cut(s) 168, 532, 822
Mox20I TGGCCA 1 cut(s) 199
Mph1103I ATGCAT 1 cut(s) 883
MroXI GAANNNNTTC 1 cut(s) 492
MscI TGGCCA 1 cut(s) 199
MseI TTAA 6 cut(s) 336, 455, 833, 932, 948, 1119
MslI CAYNNNNRTG 2 cut(s) 273, 820
Msp20I TGGCCA 1 cut(s) 199
MspA1I CMGCKG 2 cut(s) 665, 926
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 3 cut(s) 118, 556, 1112
MspR9I CCNGG 6 cut(s) 118, 119, 248, 359, 427, 611
MunI CAATTG 1 cut(s) 868
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 4 cut(s) 248, 359, 427, 611
MvnI CGCG 2 cut(s) 223, 469
MwoI GCNNNNNNNGC 1 cut(s) 1091
NciI CCSGG 2 cut(s) 118, 119
NcoI CCATGG 1 cut(s) 328
NdeI CATATG 1 cut(s) 1029
NdeII GATC 5 cut(s) 74, 178, 592, 1280, 1332
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 2 cut(s) 137, 514
NsiI ATGCAT 1 cut(s) 883
NspI RCATGY 3 cut(s) 325, 631, 825
PaeI GCATGC 1 cut(s) 825
PagI TCATGA 2 cut(s) 585, 1324
PciI ACATGT 1 cut(s) 321
PctI GAATGC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 7 cut(s) 52, 251, 720, 758, 1079, 1151, 1321
PkrI GCNGC 4 cut(s) 618, 664, 967, 1093
PleI GAGTC 4 cut(s) 37, 212, 442, 924
PpsI GAGTC 4 cut(s) 37, 212, 442, 924
PscI ACATGT 1 cut(s) 321
Psp6I CCWGG 4 cut(s) 246, 357, 425, 609
PspGI CCWGG 4 cut(s) 246, 357, 425, 609
PspN4I GGNNCC 1 cut(s) 477
PspOMI GGGCCC 1 cut(s) 475
PspPI GGNCC 2 cut(s) 475, 476
PstI CTGCAG 1 cut(s) 1087
PstNI CAGNNNCTG 1 cut(s) 1097
PsuI RGATCY 1 cut(s) 1280
PvuII CAGCTG 2 cut(s) 665, 926
RsaI GTAC 3 cut(s) 410, 626, 1339
RsaNI GTAC 3 cut(s) 409, 625, 1338
RseI CAYNNNNRTG 2 cut(s) 273, 820
SaqAI TTAA 6 cut(s) 336, 455, 833, 932, 948, 1119
SatI GCNGC 4 cut(s) 617, 663, 966, 1092
Sau3AI GATC 5 cut(s) 74, 178, 592, 1280, 1332
Sau96I GGNCC 2 cut(s) 475, 476
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 4 cut(s) 38, 212, 443, 925
ScrFI CCNGG 6 cut(s) 118, 119, 248, 359, 427, 611
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 5 cut(s) 103, 637, 868, 890, 1096
SfcI CTRYAG 3 cut(s) 6, 921, 1083
SmaI CCCGGG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 273, 820
SmlI CTYRAG 3 cut(s) 596, 620, 947
SmoI CTYRAG 3 cut(s) 596, 620, 947
SphI GCATGC 1 cut(s) 825
Sse9I AATT 9 cut(s) 37, 210, 537, 724, 846, 857, 868, 933, 1170
SsiI CCGC 3 cut(s) 467, 479, 502
SspMI CTAG 2 cut(s) 57, 977
StyD4I CCNGG 6 cut(s) 116, 117, 246, 357, 425, 609
StyI CCWWGG 4 cut(s) 328, 346, 1146, 1284
TaaI ACNGT 4 cut(s) 83, 230, 1000, 1137
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 1077
TasI AATT 9 cut(s) 37, 210, 537, 724, 846, 857, 868, 933, 1170
TatI WGTACW 2 cut(s) 408, 624
TfiI GAWTC 7 cut(s) 52, 251, 720, 758, 1079, 1151, 1321
Tru1I TTAA 6 cut(s) 336, 455, 833, 932, 948, 1119
Tru9I TTAA 6 cut(s) 336, 455, 833, 932, 948, 1119
TscAI CASTG 7 cut(s) 88, 280, 400, 1003, 1092, 1185, 1195
TseFI GTSAC 2 cut(s) 137, 514
TseI GCWGC 4 cut(s) 616, 662, 965, 1091
Tsp45I GTSAC 2 cut(s) 137, 514
TspDTI ATGAA 3 cut(s) 138, 602, 1016
TspGWI ACGGA 2 cut(s) 272, 1038
TspMI CCCGGG 1 cut(s) 117
TspRI CASTG 7 cut(s) 88, 280, 400, 1003, 1092, 1185, 1195
Vha464I CTTAAG 1 cut(s) 947
XapI RAATTY 3 cut(s) 210, 537, 857
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 3 cut(s) 325, 631, 825
XmaI CCCGGG 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 2 cut(s) 57, 977
ZrmI AGTACT 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.