BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05750 AT3G05750 AT3G05750 AT3G05750 AT3G58650 AT5G26910 AT5G26910 AT5G26910 AT5G26910 |
| fragaria_vesca | FvH4_4g19300 FvH4_4g19300 FvH4_4g19300 |
| malus_domestica | MD13G1158100.v1.1 MD16G1158900.v1.1 |
| prunus_persica | Prupe.1G125400_v2.0.a1 Prupe.1G125400_v2.0.a1 Prupe.1G125400_v2.0.a1 |
| pyrus_communis | pycom13g13520 pycom16g13380 |
| rosa_chinensis | RchiOBHm_Chr4g0424321 |
| rosa_laevigata | RLG00000007486 |
| rosa_multiflora | Rmu_sc0002260.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00366270 |
| rosa_rugosa | Rorug04G0195900 Rorug04G0195900 |
| rosa_samantha | Rh4AG252700 Rh4BG258100 Rh4CG269000 Rh4DG252400 Rh4DG252500 |
| rosa_wichuraiana | Rw4G021790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 888, 2153 |
| AccIII | TCCGGA | 1 cut(s) | 597 |
| AciI | CCGC | 7 cut(s) | 445, 520, 929, 1036, 1264, 1282, 1386 |
| AclI | AACGTT | 1 cut(s) | 536 |
| AclWI | GGATC | 5 cut(s) | 27, 136, 365, 381, 1346 |
| AcoI | YGGCCR | 1 cut(s) | 1969 |
| AcsI | RAATTY | 4 cut(s) | 208, 424, 1555, 1988 |
| AcuI | CTGAAG | 2 cut(s) | 805, 1938 |
| AfaI | GTAC | 2 cut(s) | 333, 1946 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 579, 1301, 1460 |
| AhlI | ACTAGT | 1 cut(s) | 260 |
| AjnI | CCWGG | 5 cut(s) | 67, 604, 620, 1213, 1767 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 885, 917 |
| Alw21I | GWGCWC | 2 cut(s) | 1247, 1941 |
| Alw26I | GTCTC | 4 cut(s) | 594, 969, 999, 2312 |
| AlwI | GGATC | 5 cut(s) | 27, 136, 365, 381, 1346 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1898, 1916 |
| Ama87I | CYCGRG | 4 cut(s) | 235, 675, 1940, 2061 |
| Aor13HI | TCCGGA | 1 cut(s) | 597 |
| AoxI | GGCC | 5 cut(s) | 65, 173, 509, 954, 1969 |
| ApeKI | GCWGC | 5 cut(s) | 102, 105, 108, 1284, 1830 |
| ApoI | RAATTY | 4 cut(s) | 208, 424, 1555, 1988 |
| AseI | ATTAAT | 1 cut(s) | 2382 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 89, 208, 1763 |
| AspS9I | GGNCC | 2 cut(s) | 174, 472 |
| AsuC2I | CCSGG | 1 cut(s) | 352 |
| AsuHPI | GGTGA | 7 cut(s) | 562, 1361, 1366, 1369, 1675, 1856, 2110 |
| AsuII | TTCGAA | 1 cut(s) | 911 |
| AsuNHI | GCTAGC | 1 cut(s) | 1070 |
| AvaI | CYCGRG | 4 cut(s) | 235, 675, 1940, 2061 |
| AvaII | GGWCC | 1 cut(s) | 472 |
| BalI | TGGCCA | 1 cut(s) | 1971 |
| BanII | GRGCYC | 2 cut(s) | 351, 1941 |
| BauI | CACGAG | 1 cut(s) | 1834 |
| BbsI | GAAGAC | 2 cut(s) | 1400, 1629 |
| Bbv12I | GWGCWC | 2 cut(s) | 1247, 1941 |
| BbvI | GCAGC | 5 cut(s) | 114, 117, 120, 1296, 1842 |
| BccI | CCATC | 6 cut(s) | 263, 452, 1376, 1591, 1996, 2248 |
| BceAI | ACGGC | 1 cut(s) | 1669 |
| BciT130I | CCWGG | 5 cut(s) | 69, 606, 622, 1215, 1769 |
| BclI | TGATCA | 2 cut(s) | 1501, 1693 |
| BcnI | CCSGG | 1 cut(s) | 352 |
| BcoDI | GTCTC | 4 cut(s) | 594, 969, 999, 2312 |
| BcuI | ACTAGT | 1 cut(s) | 260 |
| BfaI | CTAG | 6 cut(s) | 99, 261, 758, 1071, 1077, 2264 |
| BfmI | CTRYAG | 3 cut(s) | 1000, 1735, 1828 |
| BfuAI | ACCTGC | 2 cut(s) | 888, 2153 |
| BisI | GCNGC | 6 cut(s) | 103, 106, 109, 929, 1285, 1831 |
| BlsI | GCNGC | 6 cut(s) | 104, 107, 110, 930, 1286, 1832 |
| Bme1390I | CCNGG | 6 cut(s) | 69, 352, 606, 622, 1215, 1769 |
| Bme18I | GGWCC | 1 cut(s) | 472 |
| BmeT110I | CYCGRG | 4 cut(s) | 235, 675, 1940, 2061 |
| BmgT120I | GGNCC | 2 cut(s) | 174, 472 |
| BmiI | GGNNCC | 6 cut(s) | 280, 348, 473, 626, 1645, 2143 |
| BmrFI | CCNGG | 6 cut(s) | 69, 352, 606, 622, 1215, 1769 |
| BmrI | ACTGGG | 1 cut(s) | 1942 |
| BmsI | GCATC | 3 cut(s) | 403, 1498, 2047 |
| BmtI | GCTAGC | 1 cut(s) | 1074 |
| BmuI | ACTGGG | 1 cut(s) | 1942 |
| BpiI | GAAGAC | 2 cut(s) | 1400, 1629 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2044, 2076 |
| BpmI | CTGGAG | 1 cut(s) | 1338 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2223 |
| Bpu14I | TTCGAA | 1 cut(s) | 911 |
| BpuEI | CTTGAG | 2 cut(s) | 845, 1828 |
| BpuMI | CCSGG | 1 cut(s) | 352 |
| BsaBI | GATNNNNATC | 1 cut(s) | 369 |
| BsaI | GGTCTC | 1 cut(s) | 999 |
| BsaJI | CCNNGG | 6 cut(s) | 342, 350, 545, 605, 674, 1995 |
| BsaWI | WCCGGW | 1 cut(s) | 597 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 238, 268, 526, 556, 1928, 1958 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 579, 1301, 1460 |
| Bse118I | RCCGGY | 2 cut(s) | 507, 1294 |
| Bse1I | ACTGG | 1 cut(s) | 1937 |
| Bse3DI | GCAATG | 3 cut(s) | 1679, 1861, 1959 |
| Bse8I | GATNNNNATC | 1 cut(s) | 369 |
| BseAI | TCCGGA | 1 cut(s) | 597 |
| BseBI | CCWGG | 5 cut(s) | 69, 606, 622, 1215, 1769 |
| BseDI | CCNNGG | 6 cut(s) | 342, 350, 545, 605, 674, 1995 |
| BseGI | GGATG | 6 cut(s) | 248, 418, 1432, 1448, 2007, 2263 |
| BseJI | GATNNNNATC | 1 cut(s) | 369 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 579, 1301, 1460 |
| BseMI | GCAATG | 3 cut(s) | 1679, 1861, 1959 |
| BseMII | CTCAG | 5 cut(s) | 397, 1591, 1905, 2015, 2237 |
| BseNI | ACTGG | 1 cut(s) | 1937 |
| BseRI | GAGGAG | 2 cut(s) | 54, 85 |
| BseXI | GCAGC | 5 cut(s) | 114, 117, 120, 1296, 1842 |
| BsgI | GTGCAG | 1 cut(s) | 927 |
| Bsh1285I | CGRYCG | 1 cut(s) | 520 |
| BshFI | GGCC | 5 cut(s) | 67, 175, 511, 956, 1971 |
| BsiEI | CGRYCG | 1 cut(s) | 520 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1247, 1941 |
| BsiHKCI | CYCGRG | 4 cut(s) | 235, 675, 1940, 2061 |
| BsiSI | CCGG | 4 cut(s) | 352, 508, 598, 1295 |
| BslFI | GGGAC | 4 cut(s) | 485, 1246, 1415, 1684 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 579, 1301, 1460 |
| BsmAI | GTCTC | 4 cut(s) | 594, 969, 999, 2312 |
| BsmFI | GGGAC | 4 cut(s) | 485, 1246, 1415, 1684 |
| BsnI | GGCC | 5 cut(s) | 67, 175, 511, 956, 1971 |
| Bso31I | GGTCTC | 1 cut(s) | 999 |
| BsoBI | CYCGRG | 4 cut(s) | 235, 675, 1940, 2061 |
| Bsp119I | TTCGAA | 1 cut(s) | 911 |
| Bsp1286I | GDGCHC | 3 cut(s) | 351, 1247, 1941 |
| Bsp13I | TCCGGA | 1 cut(s) | 597 |
| BspACI | CCGC | 7 cut(s) | 445, 520, 929, 1036, 1264, 1282, 1386 |
| BspANI | GGCC | 5 cut(s) | 67, 175, 511, 956, 1971 |
| BspCNI | CTCAG | 5 cut(s) | 396, 1590, 1904, 2016, 2236 |
| BspEI | TCCGGA | 1 cut(s) | 597 |
| BspHI | TCATGA | 1 cut(s) | 1927 |
| BspLI | GGNNCC | 6 cut(s) | 280, 348, 473, 626, 1645, 2143 |
| BspMAI | CTGCAG | 1 cut(s) | 1832 |
| BspMI | ACCTGC | 2 cut(s) | 888, 2153 |
| BspOI | GCTAGC | 1 cut(s) | 1074 |
| BspPI | GGATC | 5 cut(s) | 27, 136, 365, 381, 1346 |
| BspQI | GCTCTTC | 1 cut(s) | 95 |
| BspT104I | TTCGAA | 1 cut(s) | 911 |
| BspTNI | GGTCTC | 1 cut(s) | 999 |
| BsrDI | GCAATG | 3 cut(s) | 1679, 1861, 1959 |
| BsrFI | RCCGGY | 2 cut(s) | 507, 1294 |
| BsrI | ACTGG | 1 cut(s) | 1937 |
| BssAI | RCCGGY | 2 cut(s) | 507, 1294 |
| BssECI | CCNNGG | 6 cut(s) | 342, 350, 545, 605, 674, 1995 |
| BssSI | CACGAG | 1 cut(s) | 1834 |
| BssT1I | CCWWGG | 3 cut(s) | 342, 545, 1995 |
| Bst2BI | CACGAG | 1 cut(s) | 1834 |
| Bst2UI | CCWGG | 5 cut(s) | 69, 606, 622, 1215, 1769 |
| Bst4CI | ACNGT | 8 cut(s) | 696, 980, 1087, 1328, 1378, 1706, 1796, 2088 |
| Bst6I | CTCTTC | 4 cut(s) | 95, 721, 1626, 2343 |
| BstBI | TTCGAA | 1 cut(s) | 911 |
| BstC8I | GCNNGC | 3 cut(s) | 403, 1072, 2126 |
| BstDEI | CTNAG | 8 cut(s) | 383, 1029, 1206, 1577, 1593, 1891, 2024, 2223 |
| BstF5I | GGATG | 6 cut(s) | 248, 418, 1432, 1448, 2007, 2263 |
| BstMAI | GTCTC | 4 cut(s) | 594, 969, 999, 2312 |
| BstMCI | CGRYCG | 1 cut(s) | 520 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 108, 402, 1232, 1517 |
| BstNI | CCWGG | 5 cut(s) | 69, 606, 622, 1215, 1769 |
| BstNSI | RCATGY | 1 cut(s) | 950 |
| BstSCI | CCNGG | 6 cut(s) | 67, 350, 604, 620, 1213, 1767 |
| BstSFI | CTRYAG | 3 cut(s) | 1000, 1735, 1828 |
| BstV1I | GCAGC | 5 cut(s) | 114, 117, 120, 1296, 1842 |
| BstV2I | GAAGAC | 2 cut(s) | 1400, 1629 |
| BstX2I | RGATCY | 1 cut(s) | 386 |
| BstYI | RGATCY | 1 cut(s) | 386 |
| BsuRI | GGCC | 5 cut(s) | 67, 175, 511, 956, 1971 |
| BtsCI | GGATG | 6 cut(s) | 248, 418, 1432, 1448, 2007, 2263 |
| BtsI | GCAGTG | 2 cut(s) | 454, 1803 |
| BtsIMutI | CAGTG | 5 cut(s) | 454, 1333, 1803, 2084, 2111 |
| BveI | ACCTGC | 2 cut(s) | 888, 2153 |
| Cac8I | GCNNGC | 3 cut(s) | 403, 1072, 2126 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1898, 1916 |
| CciI | TCATGA | 1 cut(s) | 1927 |
| Cfr10I | RCCGGY | 2 cut(s) | 507, 1294 |
| Cfr13I | GGNCC | 2 cut(s) | 174, 472 |
| Csp6I | GTAC | 2 cut(s) | 332, 1945 |
| CviQI | GTAC | 2 cut(s) | 332, 1945 |
| DdeI | CTNAG | 8 cut(s) | 383, 1029, 1206, 1577, 1593, 1891, 2024, 2223 |
| DraI | TTTAAA | 1 cut(s) | 1491 |
| EaeI | YGGCCR | 1 cut(s) | 1969 |
| Eam1104I | CTCTTC | 4 cut(s) | 95, 721, 1626, 2343 |
| EarI | CTCTTC | 4 cut(s) | 95, 721, 1626, 2343 |
| Ecl136II | GAGCTC | 1 cut(s) | 1939 |
| Eco130I | CCWWGG | 3 cut(s) | 342, 545, 1995 |
| Eco24I | GRGCYC | 2 cut(s) | 351, 1941 |
| Eco31I | GGTCTC | 1 cut(s) | 999 |
| Eco47I | GGWCC | 1 cut(s) | 472 |
| Eco53kI | GAGCTC | 1 cut(s) | 1939 |
| Eco57I | CTGAAG | 2 cut(s) | 805, 1938 |
| Eco88I | CYCGRG | 4 cut(s) | 235, 675, 1940, 2061 |
| EcoICRI | GAGCTC | 1 cut(s) | 1939 |
| EcoRI | GAATTC | 2 cut(s) | 208, 1988 |
| EcoRII | CCWGG | 5 cut(s) | 67, 604, 620, 1213, 1767 |
| EcoT14I | CCWWGG | 3 cut(s) | 342, 545, 1995 |
| EcoT22I | ATGCAT | 1 cut(s) | 418 |
| EcoT38I | GRGCYC | 2 cut(s) | 351, 1941 |
| ErhI | CCWWGG | 3 cut(s) | 342, 545, 1995 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 74, 106 |
| FaqI | GGGAC | 4 cut(s) | 485, 1246, 1415, 1684 |
| FauI | CCCGC | 3 cut(s) | 1271, 1289, 1379 |
| FauNDI | CATATG | 1 cut(s) | 418 |
| FbaI | TGATCA | 2 cut(s) | 1501, 1693 |
| Fnu4HI | GCNGC | 6 cut(s) | 103, 106, 109, 929, 1285, 1831 |
| FokI | GGATG | 6 cut(s) | 235, 425, 1435, 1439, 2014, 2270 |
| FriOI | GRGCYC | 2 cut(s) | 351, 1941 |
| Fsp4HI | GCNGC | 6 cut(s) | 103, 106, 109, 929, 1285, 1831 |
| FspBI | CTAG | 6 cut(s) | 99, 261, 758, 1071, 1077, 2264 |
| GluI | GCNGC | 6 cut(s) | 103, 106, 109, 929, 1285, 1831 |
| GsuI | CTGGAG | 1 cut(s) | 1338 |
| HaeIII | GGCC | 5 cut(s) | 67, 175, 511, 956, 1971 |
| HapII | CCGG | 4 cut(s) | 352, 508, 598, 1295 |
| HincII | GTYRAC | 4 cut(s) | 1324, 1792, 2112, 2269 |
| HindII | GTYRAC | 4 cut(s) | 1324, 1792, 2112, 2269 |
| HindIII | AAGCTT | 2 cut(s) | 648, 762 |
| HpaI | GTTAAC | 3 cut(s) | 1324, 1792, 2112 |
| HpaII | CCGG | 4 cut(s) | 352, 508, 598, 1295 |
| HphI | GGTGA | 7 cut(s) | 562, 1361, 1366, 1369, 1675, 1856, 2110 |
| Hpy166II | GTNNAC | 7 cut(s) | 1174, 1324, 1440, 1792, 1850, 2112, 2269 |
| Hpy8I | GTNNAC | 7 cut(s) | 1174, 1324, 1440, 1792, 1850, 2112, 2269 |
| Hpy99I | CGWCG | 1 cut(s) | 1382 |
| HpyAV | CCTTC | 9 cut(s) | 119, 907, 1012, 1348, 1411, 1916, 2039, 2285, 2324 |
| HpyCH4III | ACNGT | 8 cut(s) | 696, 980, 1087, 1328, 1378, 1706, 1796, 2088 |
| HpyCH4IV | ACGT | 2 cut(s) | 536, 1130 |
| HpyCH4V | TGCA | 9 cut(s) | 416, 807, 944, 950, 1309, 1511, 1611, 1830, 2148 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 108, 402, 1232, 1517 |
| HpyF3I | CTNAG | 8 cut(s) | 383, 1029, 1206, 1577, 1593, 1891, 2024, 2223 |
| HpySE526I | ACGT | 2 cut(s) | 536, 1130 |
| Kpn2I | TCCGGA | 1 cut(s) | 597 |
| Ksp22I | TGATCA | 2 cut(s) | 1501, 1693 |
| KspAI | GTTAAC | 3 cut(s) | 1324, 1792, 2112 |
| LguI | GCTCTTC | 1 cut(s) | 95 |
| LmnI | GCTCC | 3 cut(s) | 292, 346, 1936 |
| Lsp1109I | GCAGC | 5 cut(s) | 114, 117, 120, 1296, 1842 |
| LweI | GCATC | 3 cut(s) | 403, 1498, 2047 |
| MaeI | CTAG | 6 cut(s) | 99, 261, 758, 1071, 1077, 2264 |
| MaeII | ACGT | 2 cut(s) | 536, 1130 |
| MaeIII | GTNAC | 6 cut(s) | 230, 449, 503, 537, 568, 1367 |
| MflI | RGATCY | 1 cut(s) | 386 |
| MhlI | GDGCHC | 3 cut(s) | 351, 1247, 1941 |
| MlsI | TGGCCA | 1 cut(s) | 1971 |
| MluCI | AATT | 9 cut(s) | 208, 424, 880, 1118, 1555, 1988, 2334, 2363, 2379 |
| MluNI | TGGCCA | 1 cut(s) | 1971 |
| MlyI | GAGTC | 6 cut(s) | 227, 329, 610, 1523, 1610, 1643 |
| MmeI | TCCRAC | 1 cut(s) | 1545 |
| Mox20I | TGGCCA | 1 cut(s) | 1971 |
| Mph1103I | ATGCAT | 1 cut(s) | 418 |
| MroI | TCCGGA | 1 cut(s) | 597 |
| MroXI | GAANNNNTTC | 3 cut(s) | 89, 208, 1763 |
| MscI | TGGCCA | 1 cut(s) | 1971 |
| MseI | TTAA | 8 cut(s) | 1056, 1323, 1490, 1791, 1983, 2111, 2378, 2382 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1427, 2119 |
| Msp20I | TGGCCA | 1 cut(s) | 1971 |
| MspI | CCGG | 4 cut(s) | 352, 508, 598, 1295 |
| MspR9I | CCNGG | 6 cut(s) | 69, 352, 606, 622, 1215, 1769 |
| MvaI | CCWGG | 5 cut(s) | 69, 606, 622, 1215, 1769 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 108, 402, 1232, 1517 |
| NciI | CCSGG | 1 cut(s) | 352 |
| NdeI | CATATG | 1 cut(s) | 418 |
| NheI | GCTAGC | 1 cut(s) | 1070 |
| NlaIV | GGNNCC | 6 cut(s) | 280, 348, 473, 626, 1645, 2143 |
| NmuCI | GTSAC | 3 cut(s) | 230, 449, 568 |
| NsiI | ATGCAT | 1 cut(s) | 418 |
| NspI | RCATGY | 1 cut(s) | 950 |
| NspV | TTCGAA | 1 cut(s) | 911 |
| PacI | TTAATTAA | 1 cut(s) | 2382 |
| PaeR7I | CTCGAG | 2 cut(s) | 235, 1940 |
| PagI | TCATGA | 1 cut(s) | 1927 |
| PciSI | GCTCTTC | 1 cut(s) | 95 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2040 |
| PdmI | GAANNNNTTC | 3 cut(s) | 89, 208, 1763 |
| PfoI | TCCNGGA | 1 cut(s) | 620 |
| PkrI | GCNGC | 6 cut(s) | 104, 107, 110, 930, 1286, 1832 |
| PleI | GAGTC | 6 cut(s) | 227, 328, 609, 1522, 1609, 1642 |
| PpsI | GAGTC | 6 cut(s) | 227, 328, 609, 1522, 1609, 1642 |
| PshBI | ATTAAT | 1 cut(s) | 2382 |
| Psp124BI | GAGCTC | 1 cut(s) | 1941 |
| Psp1406I | AACGTT | 1 cut(s) | 536 |
| Psp6I | CCWGG | 5 cut(s) | 67, 604, 620, 1213, 1767 |
| PspGI | CCWGG | 5 cut(s) | 67, 604, 620, 1213, 1767 |
| PspN4I | GGNNCC | 6 cut(s) | 280, 348, 473, 626, 1645, 2143 |
| PspPI | GGNCC | 2 cut(s) | 174, 472 |
| PspXI | VCTCGAGB | 2 cut(s) | 235, 1940 |
| PstI | CTGCAG | 1 cut(s) | 1832 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1898, 1916 |
| PsuI | RGATCY | 1 cut(s) | 386 |
| RsaI | GTAC | 2 cut(s) | 333, 1946 |
| RsaNI | GTAC | 2 cut(s) | 332, 1945 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1427, 2119 |
| SacI | GAGCTC | 1 cut(s) | 1941 |
| SapI | GCTCTTC | 1 cut(s) | 95 |
| SaqAI | TTAA | 8 cut(s) | 1056, 1323, 1490, 1791, 1983, 2111, 2378, 2382 |
| SatI | GCNGC | 6 cut(s) | 103, 106, 109, 929, 1285, 1831 |
| Sau96I | GGNCC | 2 cut(s) | 174, 472 |
| SchI | GAGTC | 6 cut(s) | 227, 329, 610, 1523, 1610, 1643 |
| ScrFI | CCNGG | 6 cut(s) | 69, 352, 606, 622, 1215, 1769 |
| SduI | GDGCHC | 3 cut(s) | 351, 1247, 1941 |
| SfaNI | GCATC | 3 cut(s) | 403, 1498, 2047 |
| SfcI | CTRYAG | 3 cut(s) | 1000, 1735, 1828 |
| Sfr274I | CTCGAG | 2 cut(s) | 235, 1940 |
| SfuI | TTCGAA | 1 cut(s) | 911 |
| SinI | GGWCC | 1 cut(s) | 472 |
| SlaI | CTCGAG | 2 cut(s) | 235, 1940 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1427, 2119 |
| SmlI | CTYRAG | 4 cut(s) | 235, 860, 1843, 1940 |
| SmoI | CTYRAG | 4 cut(s) | 235, 860, 1843, 1940 |
| SpeI | ACTAGT | 1 cut(s) | 260 |
| Sse9I | AATT | 9 cut(s) | 208, 424, 880, 1118, 1555, 1988, 2334, 2363, 2379 |
| SsiI | CCGC | 7 cut(s) | 445, 520, 929, 1036, 1264, 1282, 1386 |
| SspI | AATATT | 1 cut(s) | 1764 |
| SspMI | CTAG | 6 cut(s) | 99, 261, 758, 1071, 1077, 2264 |
| SstI | GAGCTC | 1 cut(s) | 1941 |
| StyD4I | CCNGG | 6 cut(s) | 67, 350, 604, 620, 1213, 1767 |
| StyI | CCWWGG | 3 cut(s) | 342, 545, 1995 |
| TaaI | ACNGT | 8 cut(s) | 696, 980, 1087, 1328, 1378, 1706, 1796, 2088 |
| TaiI | ACGT | 2 cut(s) | 539, 1133 |
| TasI | AATT | 9 cut(s) | 208, 424, 880, 1118, 1555, 1988, 2334, 2363, 2379 |
| TatI | WGTACW | 1 cut(s) | 1944 |
| TauI | GCSGC | 1 cut(s) | 931 |
| Tru1I | TTAA | 8 cut(s) | 1056, 1323, 1490, 1791, 1983, 2111, 2378, 2382 |
| Tru9I | TTAA | 8 cut(s) | 1056, 1323, 1490, 1791, 1983, 2111, 2378, 2382 |
| TscAI | CASTG | 5 cut(s) | 454, 1333, 1810, 2091, 2111 |
| TseFI | GTSAC | 3 cut(s) | 230, 449, 568 |
| TseI | GCWGC | 5 cut(s) | 102, 105, 108, 1284, 1830 |
| Tsp45I | GTSAC | 3 cut(s) | 230, 449, 568 |
| TspGWI | ACGGA | 3 cut(s) | 1209, 1351, 1967 |
| TspRI | CASTG | 5 cut(s) | 454, 1333, 1810, 2091, 2111 |
| VpaK11BI | GGWCC | 1 cut(s) | 472 |
| VspI | ATTAAT | 1 cut(s) | 2382 |
| XapI | RAATTY | 4 cut(s) | 208, 424, 1555, 1988 |
| XceI | RCATGY | 1 cut(s) | 950 |
| XhoI | CTCGAG | 2 cut(s) | 235, 1940 |
| XmnI | GAANNNNTTC | 3 cut(s) | 89, 208, 1763 |
| XspI | CTAG | 6 cut(s) | 99, 261, 758, 1071, 1077, 2264 |
| Zsp2I | ATGCAT | 1 cut(s) | 418 |