AT3G05975

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013238
Physical Location & Seq
Reverse (-)
1792010 .. 1792745
736 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05975.1

Sequence Viewer

Length: 570 bp
ATGTCCAAGCGACGCATTTGCTGCATAGTTTCCGGAATCATCTTTGTCCTCTTCGTAATCTTCATGACCGCTTTGATCCTTGCACAAGTGTTCAAACCAAAACATCCGATACTACAAACCGTCTCTTCAACTGTTGATGGCATATCTACAAATATATCACTACCATACGAGGTCCAACTAAATTTCACTCTTACGCTGGAGATGCTGCTCAAGAATCCTAACGTTGCGGATTTTGAATACAAGACAGTGGAAAACTTGGTTTATTACAGGGATACACTAGTCGGAAATCTCACACTTCCTTCGAGCACATTACCTGCCAAAGGTTCAGTGCTTTTGCCATGTCCTCTATTTCTCCAGCTCGATAAATTTGTCGCGAATTTAGGTGATATCGTGCAAGATGTATTGCATGGAAAAATTGTGATGGAGACAAGAGCAAAAATGCCAGGAAAAATCACTTTGTTGGGAATCTTTAAGATACCTTTGGATTCAATATCGCATTGCAATCTCGTACTCGGCTTTCCTTCAATGGTAGTGGAGGACCAAGTGTGTGATCTCAAAACTAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

189

Amino Acids

20.97

Weight (kDa)

8.26

Isoelectric Point (pI)

26.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 70 - 161 1.9e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05975
fragaria_vesca FvH4_6g09280
malus_domestica MD04G1179300.v1.1 MD12G1194400.v1.1
prunus_persica Prupe.6G299100_v2.0.a1
pyrus_communis pycom04g15840 pycom12g18060
rosa_chinensis RchiOBHm_Chr3g0459661
rosa_laevigata RLG00000025069
rosa_multiflora Rmu_sc0000240.1_g000019
rosa_roxburghii Rroxscaffold_6G00420100
rosa_rugosa Rorug03G0036900
rosa_samantha Rh3AG095800 Rh3BG098300 Rh3CG100300 Rh3DG099700
rosa_wichuraiana Rw0G013780 Rw0G017640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccII CGCG 1 cut(s) 374
AccIII TCCGGA 1 cut(s) 32
AciI CCGC 2 cut(s) 69, 227
AclI AACGTT 1 cut(s) 222
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 3 cut(s) 181, 365, 376
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 5 cut(s) 94, 129, 236, 489, 525
AhlI ACTAGT 1 cut(s) 277
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 2 cut(s) 358, 565
AluI AGCT 2 cut(s) 358, 565
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 2 cut(s) 127, 419
AlwI GGATC 1 cut(s) 70
Aor13HI TCCGGA 1 cut(s) 32
ApeKI GCWGC 2 cut(s) 21, 205
ApoI RAATTY 3 cut(s) 181, 365, 376
AspS9I GGNCC 2 cut(s) 172, 538
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 2 cut(s) 172, 538
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 8, 192
BccI CCATC 2 cut(s) 131, 415
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 127, 419
BcuI ACTAGT 1 cut(s) 277
BfaI CTAG 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 322
BfuI GTATCC 1 cut(s) 265
BisI GCNGC 2 cut(s) 22, 206
BlsI GCNGC 2 cut(s) 23, 207
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 2 cut(s) 172, 538
BmgT120I GGNCC 2 cut(s) 172, 538
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 192
BpmI CTGGAG 2 cut(s) 218, 338
BpuEI CTTGAG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 496
BseAI TCCGGA 1 cut(s) 32
BseBI CCWGG 1 cut(s) 444
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMI GCAATG 1 cut(s) 496
BseXI GCAGC 2 cut(s) 8, 192
Bsh1236I CGCG 1 cut(s) 374
BsiHKAI GWGCWC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 2 cut(s) 127, 419
BsmBI CGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 308
Bsp13I TCCGGA 1 cut(s) 32
Bsp143I GATC 2 cut(s) 75, 550
Bsp68I TCGCGA 1 cut(s) 374
BspACI CCGC 2 cut(s) 69, 227
BspEI TCCGGA 1 cut(s) 32
BspFNI CGCG 1 cut(s) 374
BspHI TCATGA 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 496
BssMI GATC 2 cut(s) 75, 550
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 121, 133, 247
Bst6I CTCTTC 2 cut(s) 56, 130
BstAPI GCANNNNNTGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 561
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 374
BstKTI GATC 2 cut(s) 78, 553
BstMAI GTCTC 2 cut(s) 127, 419
BstMBI GATC 2 cut(s) 75, 550
BstMWI GCNNNNNNNGC 2 cut(s) 21, 202
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 8, 192
BsuI GTATCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 252, 333
BtuMI TCGCGA 1 cut(s) 374
BveI ACCTGC 1 cut(s) 322
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 172, 538
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 509
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 3 cut(s) 64, 339, 407
CviJI RGCY 3 cut(s) 358, 516, 565
CviKI_1 RGCY 3 cut(s) 358, 516, 565
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 1 cut(s) 561
DpnI GATC 2 cut(s) 77, 552
DpnII GATC 2 cut(s) 75, 550
Eam1104I CTCTTC 2 cut(s) 56, 130
EarI CTCTTC 2 cut(s) 56, 130
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 172, 538
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 442
EcoRV GATATC 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 3 cut(s) 67, 342, 410
FaiI YATR 7 cut(s) 26, 65, 143, 155, 166, 340, 408
FatI CATG 3 cut(s) 63, 338, 406
Fnu4HI GCNGC 2 cut(s) 22, 206
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 22, 206
FspBI CTAG 1 cut(s) 278
GluI GCNGC 2 cut(s) 22, 206
GsuI CTGGAG 2 cut(s) 218, 338
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 21
Hin1II CATG 3 cut(s) 67, 342, 410
HinfI GANTC 4 cut(s) 36, 214, 465, 485
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 395
Hpy188I TCNGA 2 cut(s) 108, 284
Hpy188III TCNNGA 4 cut(s) 33, 64, 211, 373
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 309, 531
HpyCH4III ACNGT 3 cut(s) 121, 133, 247
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 24, 83, 394, 406, 501
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 202
HpyF3I CTNAG 1 cut(s) 561
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 67, 342, 410
Kpn2I TCCGGA 1 cut(s) 32
Kzo9I GATC 2 cut(s) 75, 550
LpnPI CCDG 7 cut(s) 46, 182, 253, 327, 368, 429, 456
Lsp1109I GCAGC 2 cut(s) 8, 192
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 222
MalI GATC 2 cut(s) 77, 552
MboI GATC 2 cut(s) 75, 550
MboII GAAGA 3 cut(s) 43, 52, 117
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 4 cut(s) 181, 365, 376, 414
MmeI TCCRAC 2 cut(s) 199, 262
MnlI CCTC 4 cut(s) 59, 163, 354, 529
MroI TCCGGA 1 cut(s) 32
MseI TTAA 1 cut(s) 471
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 21, 202
NdeII GATC 2 cut(s) 75, 550
NlaIII CATG 3 cut(s) 67, 342, 410
NmeAIII GCCGAG 1 cut(s) 492
NruI TCGCGA 1 cut(s) 374
PagI TCATGA 1 cut(s) 63
PfeI GAWTC 4 cut(s) 36, 214, 465, 485
PkrI GCNGC 2 cut(s) 23, 207
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspPI GGNCC 2 cut(s) 172, 538
RruI TCGCGA 1 cut(s) 374
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 2 cut(s) 22, 206
Sau3AI GATC 2 cut(s) 75, 550
Sau96I GGNCC 2 cut(s) 172, 538
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 308
SetI ASST 8 cut(s) 174, 225, 316, 325, 360, 385, 481, 567
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 2 cut(s) 172, 538
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SpeI ACTAGT 1 cut(s) 277
Sse9I AATT 4 cut(s) 181, 365, 376, 414
SsiI CCGC 2 cut(s) 69, 227
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 3 cut(s) 121, 133, 247
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 302, 360
TasI AATT 4 cut(s) 181, 365, 376, 414
TfiI GAWTC 4 cut(s) 36, 214, 465, 485
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 2 cut(s) 252, 333
TseI GCWGC 2 cut(s) 21, 205
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 2 cut(s) 252, 333
VpaK11BI GGWCC 2 cut(s) 172, 538
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 3 cut(s) 181, 365, 376
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.