MD04G1179300.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013238
Physical Location & Seq
Reverse (-)
27041056 .. 27041664
609 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1179300.v1.1.491

Sequence Viewer

Length: 609 bp
ATGCCAGAAAATAGCAACCACAACCAACCCAACAAGCGAAAACGTTCATTTCTTATTGCCATTAGTGTTATCCTATTCTTGATCTTCCTACTCTTCATCATCGCCCTGATTCTTGCCCTAACCGTTTTTAAGCCCAAACAGCCAAAAACCGAAATCCTCTCCGCCTTCGTGGATGGCGTGGCTCCTCGCATCACCTTTCCAGCAGTCCGGGTCGAACTCAACATTACCCTCAACATCACGATCAACGTCGAGAATCAAAACCACGCAAGCTTCAGGCATGGTGAGGGAAAGACTTTGCTTCTTTACCAAGGCACACAGGTTGGGAATGCAAACTTGTACCCGGGTAACATTCCGGCGAGGGGCAACGCCACGCTGCCCTGCCGGCTTACTTTACAGGTGGACAAGCTGGCTAACGACATGAGCAAATTGATCAGTGATGTGGTGGGGGGTGAGATTATGGTCGAAACGAAAACGAGGATTCCAGGTAGGGTTACGTTCTTGGGGTTCATCAAGAAGCACGCTGTAGCGATTTCAGAATGCCAACTGACGATTGGGTTTCCGGACATGAAGGTGAAGAGGCAAGATTGCAAGAGCAAGGCCAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

203

Amino Acids

22.39

Weight (kDa)

9.93

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 80 - 178 1e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05975
fragaria_vesca FvH4_6g09280
malus_domestica MD04G1179300.v1.1 MD12G1194400.v1.1
prunus_persica Prupe.6G299100_v2.0.a1
pyrus_communis pycom04g15840 pycom12g18060
rosa_chinensis RchiOBHm_Chr3g0459661
rosa_laevigata RLG00000025069
rosa_multiflora Rmu_sc0000240.1_g000019
rosa_roxburghii Rroxscaffold_6G00420100
rosa_rugosa Rorug03G0036900
rosa_samantha Rh3AG095800 Rh3BG098300 Rh3CG100300 Rh3DG099700
rosa_wichuraiana Rw0G013780 Rw0G017640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 1 cut(s) 162
AclI AACGTT 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 256
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 359
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 2 cut(s) 270, 406
AluI AGCT 2 cut(s) 270, 406
Ama87I CYCGRG 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 43
AsuC2I CCSGG 3 cut(s) 209, 341, 342
AsuHPI GGTGA 4 cut(s) 184, 293, 461, 583
AvaI CYCGRG 1 cut(s) 340
BbvI GCAGC 1 cut(s) 360
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 3 cut(s) 209, 341, 342
BfmI CTRYAG 1 cut(s) 522
BglI GCCNNNNNGGC 1 cut(s) 382
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 4 cut(s) 209, 341, 342, 483
BmeT110I CYCGRG 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 4 cut(s) 209, 341, 342, 483
BmsI GCATC 1 cut(s) 198
BpuMI CCSGG 3 cut(s) 209, 341, 342
BsaJI CCNNGG 2 cut(s) 307, 340
BsaWI WCCGGW 1 cut(s) 559
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 559
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 307, 340
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 360
BshFI GGCC 1 cut(s) 599
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 5 cut(s) 208, 341, 353, 382, 560
BslI CCNNNNNNNGG 1 cut(s) 359
BsmI GAATGC 2 cut(s) 331, 542
BsnI GGCC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 559
Bsp143I GATC 3 cut(s) 81, 240, 429
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 599
BspEI TCCGGA 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 307, 340
BssMI GATC 3 cut(s) 81, 240, 429
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 98, 569
BstC8I GCNNGC 4 cut(s) 268, 383, 408, 519
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 3 cut(s) 84, 243, 432
BstMBI GATC 3 cut(s) 81, 240, 429
BstMWI GCNNNNNNNGC 2 cut(s) 139, 382
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 4 cut(s) 207, 339, 340, 481
BstSFI CTRYAG 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 599
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 4 cut(s) 268, 383, 408, 519
Cfr10I RCCGGY 1 cut(s) 381
Cfr9I CCCGGG 1 cut(s) 340
Csp6I GTAC 1 cut(s) 337
CviAII CATG 3 cut(s) 278, 418, 565
CviJI RGCY 8 cut(s) 133, 142, 182, 270, 385, 406, 410, 599
CviKI_1 RGCY 8 cut(s) 133, 142, 182, 270, 385, 406, 410, 599
CviQI GTAC 1 cut(s) 337
DpnI GATC 3 cut(s) 83, 242, 431
DpnII GATC 3 cut(s) 81, 240, 429
Eam1104I CTCTTC 2 cut(s) 98, 569
EarI CTCTTC 2 cut(s) 98, 569
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 3 cut(s) 281, 421, 568
FaiI YATR 4 cut(s) 279, 419, 458, 566
FatI CATG 3 cut(s) 277, 417, 564
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 374
GluI GCNGC 1 cut(s) 374
HaeIII GGCC 1 cut(s) 599
HapII CCGG 5 cut(s) 208, 341, 353, 382, 560
Hin1II CATG 3 cut(s) 281, 421, 568
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 3 cut(s) 109, 253, 478
HpaII CCGG 5 cut(s) 208, 341, 353, 382, 560
HphI GGTGA 4 cut(s) 184, 293, 461, 583
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 1 cut(s) 535
Hpy188III TCNNGA 5 cut(s) 79, 238, 250, 511, 560
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 175, 562
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 3 cut(s) 43, 246, 494
HpyCH4V TGCA 2 cut(s) 329, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 382
HpySE526I ACGT 3 cut(s) 43, 246, 494
Hsp92II CATG 3 cut(s) 281, 421, 568
Kpn2I TCCGGA 1 cut(s) 559
KroI GCCGGC 1 cut(s) 381
KroNI GCCGGC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 3 cut(s) 81, 240, 429
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 1 cut(s) 198
MaeII ACGT 3 cut(s) 43, 246, 494
MaeIII GTNAC 2 cut(s) 344, 490
MalI GATC 3 cut(s) 83, 242, 431
MboI GATC 3 cut(s) 81, 240, 429
MboII GAAGA 3 cut(s) 76, 85, 586
MluCI AATT 1 cut(s) 425
MnlI CCTC 7 cut(s) 167, 195, 239, 277, 351, 468, 570
MroI TCCGGA 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 381
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 569
MspI CCGG 5 cut(s) 208, 341, 353, 382, 560
MspR9I CCNGG 4 cut(s) 209, 341, 342, 483
Mva1269I GAATGC 2 cut(s) 331, 542
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 139, 382
NaeI GCCGGC 1 cut(s) 383
NciI CCSGG 3 cut(s) 209, 341, 342
NdeII GATC 3 cut(s) 81, 240, 429
NgoMIV GCCGGC 1 cut(s) 381
NlaIII CATG 3 cut(s) 281, 421, 568
NlaIV GGNNCC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 2 cut(s) 331, 542
PdiI GCCGGC 1 cut(s) 383
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 3 cut(s) 109, 253, 478
PkrI GCNGC 1 cut(s) 375
Psp1406I AACGTT 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 3 cut(s) 81, 240, 429
ScrFI CCNGG 4 cut(s) 209, 341, 342, 483
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 522
SmaI CCCGGG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 1 cut(s) 425
SsiI CCGC 1 cut(s) 162
StyD4I CCNGG 4 cut(s) 207, 339, 340, 481
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 3 cut(s) 46, 249, 497
TaqI TCGA 3 cut(s) 213, 249, 462
TasI AATT 1 cut(s) 425
TfiI GAWTC 3 cut(s) 109, 253, 478
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 439
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 36, 85, 496, 581
TspMI CCCGGG 1 cut(s) 340
TspRI CASTG 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmaI CCCGGG 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.