Rw0G017640

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00786
OG0013238
Physical Location & Seq
Forward (+)
79083 .. 79691
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017640.1

Sequence Viewer

Length: 609 bp
ATGACAGAAACTGGCACAGACAACAAACCCAACAAGCGAAAGCGCCCGTGTCTCATCGCAATCGGAGTTTTCCTGTTTTTGATTCTTCTAGTCTTCATTATCTGCCTCATACTTGCCTTAACCGTTTTCAAAGCCAAACAGCCGAGAACCTCGGTCGTCTCCGCCAGCGTCGACGGCGTGGCGCAACGTCTCTCATTCCCGGCGGTCAAGATCGAGCTCAACATCACCGTTGATCTTGTAATCCTAATAGAGAATCGGAACCACGCTAGTTTCAAGCATGGGACAGGCAAGAGTTTACTGTTGTATCGAGGAGCTCAGGTTGGAGATGCTGATCTTTATCCCGGTGATATTCCGGCGAGGGCTAATAGTACGCTGCCGGCGAGGCTGACTATGCAGGCGGATCGGCTGGCGTCACAGATGAGCAATTTGGTCACTGATGCATTGAGTGGTGAATTTGTTATTGAAACAAAGTCAAGCATTCCAGGGAGGATTACGTTCTTGGGGTTTATCAAGAAGCATGCTGTTGCTGAATCTGAATGCCAATTGACTATTGGGTTTCCCAACTTGAAGGTCAAGAGTCAAGTCTGCAAAAGCAAGACCAAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

202

Amino Acids

21.99

Weight (kDa)

9.76

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05975
fragaria_vesca FvH4_6g09280
malus_domestica MD04G1179300.v1.1 MD12G1194400.v1.1
prunus_persica Prupe.6G299100_v2.0.a1
pyrus_communis pycom04g15840 pycom12g18060
rosa_chinensis RchiOBHm_Chr3g0459661
rosa_laevigata RLG00000025069
rosa_multiflora Rmu_sc0000240.1_g000019
rosa_roxburghii Rroxscaffold_6G00420100
rosa_rugosa Rorug03G0036900
rosa_samantha Rh3AG095800 Rh3BG098300 Rh3CG100300 Rh3DG099700
rosa_wichuraiana Rw0G013780 Rw0G017640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AciI CCGC 3 cut(s) 162, 203, 398
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 1 cut(s) 370
AgsI TTSAA 4 cut(s) 130, 274, 464, 568
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 2 cut(s) 217, 314
AluI AGCT 2 cut(s) 217, 314
Alw21I GWGCWC 2 cut(s) 219, 316
Alw26I GTCTC 3 cut(s) 56, 163, 194
AlwI GGATC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 2 cut(s) 45, 184
AsuC2I CCSGG 2 cut(s) 200, 342
AsuHPI GGTGA 3 cut(s) 217, 356, 461
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BanII GRGCYC 2 cut(s) 219, 316
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 219, 316
BbvI GCAGC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 2 cut(s) 200, 342
BcoDI GTCTC 3 cut(s) 56, 163, 194
BfaI CTAG 2 cut(s) 89, 267
BfoI RGCGCY 1 cut(s) 46
BglI GCCNNNNNGGC 1 cut(s) 382
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 3 cut(s) 200, 342, 483
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 3 cut(s) 200, 342, 483
BmsI GCATC 2 cut(s) 316, 427
BpiI GAAGAC 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 315
BpuMI CCSGG 2 cut(s) 200, 342
BsaBI GATNNNNATC 2 cut(s) 330, 336
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 150, 482
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 330, 336
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 150, 482
BseJI GATNNNNATC 2 cut(s) 330, 336
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 219, 316
BsiSI CCGG 4 cut(s) 200, 342, 353, 377
BslFI GGGAC 1 cut(s) 295
BsmAI GTCTC 3 cut(s) 56, 163, 194
BsmBI CGTCTC 2 cut(s) 163, 194
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 2 cut(s) 477, 542
Bsp1286I GDGCHC 2 cut(s) 219, 316
Bsp143I GATC 4 cut(s) 210, 232, 331, 400
BspACI CCGC 3 cut(s) 162, 203, 398
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 150, 482
BssMI GATC 4 cut(s) 210, 232, 331, 400
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 124, 229, 300
BstACI GRCGYC 1 cut(s) 410
BstC8I GCNNGC 5 cut(s) 166, 378, 396, 408, 519
BstDEI CTNAG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 2 cut(s) 45, 184
BstKTI GATC 4 cut(s) 213, 235, 334, 403
BstMAI GTCTC 3 cut(s) 56, 163, 194
BstMBI GATC 4 cut(s) 210, 232, 331, 400
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 174, 382, 391
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 198, 340, 481
BstV1I GCAGC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 5 cut(s) 166, 378, 396, 408, 519
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 2 cut(s) 45, 184
Cfr10I RCCGGY 1 cut(s) 376
CseI GACGC 2 cut(s) 157, 399
Csp6I GTAC 1 cut(s) 369
CviAII CATG 2 cut(s) 278, 518
CviJI RGCY 7 cut(s) 134, 142, 217, 314, 362, 385, 406
CviKI_1 RGCY 7 cut(s) 134, 142, 217, 314, 362, 385, 406
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 315
DpnI GATC 4 cut(s) 212, 234, 333, 402
DpnII GATC 4 cut(s) 210, 232, 331, 400
EciI GGCGGA 2 cut(s) 151, 413
Ecl136II GAGCTC 2 cut(s) 217, 314
Eco24I GRGCYC 2 cut(s) 219, 316
Eco53kI GAGCTC 2 cut(s) 217, 314
EcoICRI GAGCTC 2 cut(s) 217, 314
EcoRII CCWGG 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 2 cut(s) 219, 316
Esp3I CGTCTC 2 cut(s) 163, 194
FaeI CATG 2 cut(s) 281, 521
FaiI YATR 5 cut(s) 110, 279, 392, 519, 607
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 277, 517
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 374
FriOI GRGCYC 2 cut(s) 219, 316
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 2 cut(s) 89, 267
GlaI GCGC 2 cut(s) 44, 183
GluI GCNGC 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 46
HapII CCGG 4 cut(s) 200, 342, 353, 377
HgaI GACGC 2 cut(s) 157, 399
HhaI GCGC 2 cut(s) 45, 184
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 2 cut(s) 281, 521
Hin6I GCGC 2 cut(s) 43, 182
HinP1I GCGC 2 cut(s) 43, 182
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 4 cut(s) 82, 253, 530, 577
HpaII CCGG 4 cut(s) 200, 342, 353, 377
HphI GGTGA 3 cut(s) 217, 356, 461
Hpy166II GTNNAC 2 cut(s) 172, 296
Hpy188I TCNGA 3 cut(s) 65, 258, 535
Hpy188III TCNNGA 3 cut(s) 208, 511, 574
Hpy8I GTNNAC 2 cut(s) 172, 296
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 3 cut(s) 124, 229, 300
HpyCH4IV ACGT 2 cut(s) 187, 494
HpyCH4V TGCA 3 cut(s) 394, 440, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 382, 391
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 2 cut(s) 187, 494
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 2 cut(s) 281, 521
HspAI GCGC 2 cut(s) 43, 182
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 4 cut(s) 210, 232, 331, 400
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 2 cut(s) 316, 427
MaeI CTAG 2 cut(s) 89, 267
MaeII ACGT 2 cut(s) 187, 494
MaeIII GTNAC 2 cut(s) 411, 430
MalI GATC 4 cut(s) 212, 234, 333, 402
MboI GATC 4 cut(s) 210, 232, 331, 400
MboII GAAGA 2 cut(s) 77, 85
MfeI CAATTG 1 cut(s) 542
MhlI GDGCHC 2 cut(s) 219, 316
MluCI AATT 4 cut(s) 424, 452, 542, 602
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 6 cut(s) 116, 160, 302, 351, 375, 480
Mph1103I ATGCAT 1 cut(s) 442
MroNI GCCGGC 1 cut(s) 376
MseI TTAA 1 cut(s) 119
MspI CCGG 4 cut(s) 200, 342, 353, 377
MspR9I CCNGG 3 cut(s) 200, 342, 483
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 2 cut(s) 477, 542
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 3 cut(s) 174, 382, 391
NaeI GCCGGC 1 cut(s) 378
NciI CCSGG 2 cut(s) 200, 342
NdeII GATC 4 cut(s) 210, 232, 331, 400
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 2 cut(s) 281, 521
NlaIV GGNNCC 1 cut(s) 260
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 411, 430
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 521
PaeI GCATGC 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 2 cut(s) 477, 542
PdiI GCCGGC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 82, 253, 530
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
Psp124BI GAGCTC 2 cut(s) 219, 316
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SacI GAGCTC 2 cut(s) 219, 316
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 4 cut(s) 210, 232, 331, 400
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 3 cut(s) 200, 342, 483
SduI GDGCHC 2 cut(s) 219, 316
SetI ASST 7 cut(s) 152, 190, 219, 316, 321, 497, 573
SfaNI GCATC 2 cut(s) 316, 427
SgrDI CGTCGACG 1 cut(s) 170
SphI GCATGC 1 cut(s) 521
Sse9I AATT 4 cut(s) 424, 452, 542, 602
SsiI CCGC 3 cut(s) 162, 203, 398
SspMI CTAG 2 cut(s) 89, 267
SstI GAGCTC 2 cut(s) 219, 316
StyD4I CCNGG 3 cut(s) 198, 340, 481
TaaI ACNGT 3 cut(s) 124, 229, 300
TaiI ACGT 2 cut(s) 190, 497
TaqI TCGA 3 cut(s) 171, 213, 307
TaqII GACCGA 1 cut(s) 142
TasI AATT 4 cut(s) 424, 452, 542, 602
TfiI GAWTC 3 cut(s) 82, 253, 530
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 2 cut(s) 411, 430
TseI GCWGC 1 cut(s) 373
Tsp45I GTSAC 2 cut(s) 411, 430
TspDTI ATGAA 1 cut(s) 85
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 452
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 2 cut(s) 89, 267
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.