Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013238

Physical Location & Seq

Genomic Coordinates Reverse (-)

18597204 .. 18597645

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCAGAAAATAGCAACCACAACAAACCCAACAAGCGAAAACGCTCGTGTCTTATTGCCATTGGTGCTATCCTATTCTTGATCTTCCTACTCTTCATCATCGCCCTGATTCTTGCCCTAACCGTTTTTAAGCCCAAACAGCCAAAAACCAAAATCCTCTCCGCCTCCGTGGACGGTGTGGCTCCTCGCATCACCTTCCCAGCTGTCCGGATCGAACTCAACATTACCCTCTACCTGACGATCAATGTCGAGAATCAAAACCACGCAAGCTTCAGGCACGGCGAGGGAAAGACTTTGCTTCTTTACCAAGGCACACAGGTTGGGGATGCAAACTTGTACCCGGGTAACATCCCTGCGAGGGGCAACGCCATGCTGCCCTTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

129

Amino Acids

14.13

Weight (kDa)

10.08

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05975
fragaria_vesca	FvH4_6g09280
malus_domestica	MD04G1179300.v1.1 MD12G1194400.v1.1
prunus_persica	Prupe.6G299100_v2.0.a1
pyrus_communis	pycom04g15840 pycom12g18060
rosa_chinensis	RchiOBHm_Chr3g0459661
rosa_laevigata	RLG00000025069
rosa_multiflora	Rmu_sc0000240.1_g000019
rosa_roxburghii	Rroxscaffold_6G00420100
rosa_rugosa	Rorug03G0036900
rosa_samantha	Rh3AG095800 Rh3BG098300 Rh3CG100300 Rh3DG099700
rosa_wichuraiana	Rw0G013780 Rw0G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	358, 359
AluBI	AGCT	2 cut(s)	203, 270
AluI	AGCT	2 cut(s)	203, 270
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	340
Aor13HI	TCCGGA	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	373
AsuC2I	CCSGG	2 cut(s)	341, 342
AsuHPI	GGTGA	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	340
BauI	CACGAG	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	360
BceAI	ACGGC	1 cut(s)	295
BcnI	CCSGG	2 cut(s)	341, 342
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
Bme1390I	CCNGG	2 cut(s)	341, 342
BmeT110I	CYCGRG	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	341, 342
BmsI	GCATC	2 cut(s)	198, 316
BpuMI	CCSGG	2 cut(s)	341, 342
BsaJI	CCNNGG	3 cut(s)	168, 307, 340
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 359
BseAI	TCCGGA	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	168, 307, 340
BseGI	GGATG	2 cut(s)	331, 348
BseLI	CCNNNNNNNGG	2 cut(s)	358, 359
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	360
BseYI	CCCAGC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	2 cut(s)	208, 341
BslI	CCNNNNNNNGG	2 cut(s)	358, 359
BsoBI	CYCGRG	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	81, 210, 240
BspACI	CCGC	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	168, 307, 340
BssMI	GATC	3 cut(s)	81, 210, 240
BssSI	CACGAG	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	307
Bst2BI	CACGAG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	124, 176
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	331, 348
BstKTI	GATC	3 cut(s)	84, 213, 243
BstMBI	GATC	3 cut(s)	81, 210, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 139
BstSCI	CCNGG	2 cut(s)	339, 340
BstV1I	GCAGC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	331, 348
Cac8I	GCNNGC	1 cut(s)	268
Cfr9I	CCCGGG	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	133, 142, 182, 203, 270
CviKI_1	RGCY	5 cut(s)	133, 142, 182, 203, 270
CviQI	GTAC	1 cut(s)	337
DpnI	GATC	3 cut(s)	83, 212, 242
DpnII	GATC	3 cut(s)	81, 210, 240
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	1 cut(s)	373
FaiI	YATR	1 cut(s)	371
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	2 cut(s)	335, 338
Fsp4HI	GCNGC	1 cut(s)	374
GluI	GCNGC	1 cut(s)	374
GsaI	CCCAGC	1 cut(s)	203
HapII	CCGG	2 cut(s)	208, 341
Hin1II	CATG	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	2 cut(s)	109, 253
HpaII	CCGG	2 cut(s)	208, 341
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	3 cut(s)	79, 208, 250
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	124, 176
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 139
Hsp92II	CATG	1 cut(s)	373
Kpn2I	TCCGGA	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	81, 210, 240
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	18, 119, 213, 221, 248, 259, 302, 354, 366
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	2 cut(s)	198, 316
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	3 cut(s)	83, 212, 242
MboI	GATC	3 cut(s)	81, 210, 240
MboII	GAAGA	2 cut(s)	76, 85
MnlI	CCTC	6 cut(s)	167, 175, 195, 239, 277, 351
MroI	TCCGGA	1 cut(s)	207
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	208, 341
MspR9I	CCNGG	2 cut(s)	341, 342
MwoI	GCNNNNNNNGC	2 cut(s)	65, 139
NciI	CCSGG	2 cut(s)	341, 342
NdeII	GATC	3 cut(s)	81, 210, 240
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	109, 253
PkrI	GCNGC	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	3 cut(s)	81, 210, 240
ScrFI	CCNGG	2 cut(s)	341, 342
SetI	ASST	5 cut(s)	197, 205, 237, 272, 321
SfaNI	GCATC	2 cut(s)	198, 316
SmaI	CCCGGG	1 cut(s)	342
SsiI	CCGC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	339, 340
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	124, 176
TaqI	TCGA	2 cut(s)	213, 249
TfiI	GAWTC	2 cut(s)	109, 253
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	157
TspMI	CCCGGG	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.