RLG00000025069

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013238
Physical Location & Seq
Reverse (-)
41777826 .. 41779219
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025069

Sequence Viewer

Length: 774 bp
ATGCAGAGCCGTGTCGTGCAGAATCACCCCTTTTTGTCTTTTTTAGAGTCAAAGCCGTGTTGGGAAGTCATAGTGTCCGTGTCTCTTCCTAGGCACAAAGACTGTGAACAAACCGAACGTAGTTGTCAGTTTAGAAATCAGGTTTCAAACATTGATCGATCAACCATGACAGAAACTGGCACAGACAACAAACCCAACAAGCGAAAGCGCCCGTGTCTCATCGCAATCGGAGTTTTCCTGTTTTTGATTCTTCTAGTCTTCATTATCTGCCTCATACTTGCCTTAACCGTTTTCAAAGCCAAACAGCCGAGAACCTCGGTCGTCTCCGCCAGCGTCGACGGCGTGGCTCCACGTCTCTCATTCCCGGCGGTCAAGATCGAGCTCAACATCACCGTTGATCTTGTTATCCTCATAGAGAATCGGAACCACGCTAGCTTCAAGCATGGGACAGGGAAGAGTTTACTGTTGTATCGAGGAGTTCAGGTTGGAGATGCTGATCTTTACCCCGGTGATATTCCGGCGAGGGGTAATGGTACTCTGCCGGCGAAGCTGACTATGCAGGCGGATCGGCTGGCGTCACAGATGAGCAATTTGGTCAGTGATGCATCGAGTGGTGAATTTGTTATTGAAACAAAGTCAAGCATTCCAGGGAGGATTACGTTATTGGGGTTTATCAAGAAGCATGCTGTTGCTGAATCTGAATGCCAATTGACTATTGGGTTTCCCAACTTGAAGGTCAAGAGTCAAGTCTGCAAAAGCAAGACCAACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

258

Amino Acids

28.29

Weight (kDa)

9.49

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05975
fragaria_vesca FvH4_6g09280
malus_domestica MD04G1179300.v1.1 MD12G1194400.v1.1
prunus_persica Prupe.6G299100_v2.0.a1
pyrus_communis pycom04g15840 pycom12g18060
rosa_chinensis RchiOBHm_Chr3g0459661
rosa_laevigata RLG00000025069
rosa_multiflora Rmu_sc0000240.1_g000019
rosa_roxburghii Rroxscaffold_6G00420100
rosa_rugosa Rorug03G0036900
rosa_samantha Rh3AG095800 Rh3BG098300 Rh3CG100300 Rh3DG099700
rosa_wichuraiana Rw0G013780 Rw0G017640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 336
AciI CCGC 3 cut(s) 327, 368, 563
AclWI GGATC 1 cut(s) 573
AcsI RAATTY 1 cut(s) 617
AcyI GRCGYC 1 cut(s) 575
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 1 cut(s) 524
AgsI TTSAA 5 cut(s) 147, 295, 439, 629, 733
AjiI CACGTC 1 cut(s) 353
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 3 cut(s) 382, 435, 550
AluI AGCT 3 cut(s) 382, 435, 550
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 4 cut(s) 87, 221, 328, 359
AlwI GGATC 1 cut(s) 573
AlwNI CAGNNNCTG 1 cut(s) 176
ApoI RAATTY 1 cut(s) 617
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 1 cut(s) 210
AsuC2I CCSGG 2 cut(s) 365, 507
AsuHPI GGTGA 4 cut(s) 17, 382, 521, 626
AsuNHI GCTAGC 1 cut(s) 431
AvrII CCTAGG 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 452, 485
BanII GRGCYC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 384
BceAI ACGGC 2 cut(s) 40, 355
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 1 cut(s) 648
BcnI CCSGG 2 cut(s) 365, 507
BcoDI GTCTC 4 cut(s) 87, 221, 328, 359
BfaI CTAG 3 cut(s) 90, 254, 432
BfoI RGCGCY 1 cut(s) 211
BlnI CCTAGG 1 cut(s) 89
Bme1390I CCNGG 3 cut(s) 365, 507, 648
BmgBI CACGTC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 348, 425
BmrFI CCNGG 3 cut(s) 365, 507, 648
BmsI GCATC 3 cut(s) 481, 592, 614
BmtI GCTAGC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 250
BpuMI CCSGG 2 cut(s) 365, 507
Bsa29I ATCGAT 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 575
BsaJI CCNNGG 4 cut(s) 89, 315, 505, 647
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 1 cut(s) 648
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 4 cut(s) 89, 315, 505, 647
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 321
BshVI ATCGAT 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 384
BsiSI CCGG 4 cut(s) 365, 507, 518, 542
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 4 cut(s) 87, 221, 328, 359
BsmBI CGTCTC 2 cut(s) 328, 359
BsmFI GGGAC 1 cut(s) 460
BsmI GAATGC 2 cut(s) 642, 707
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 6 cut(s) 154, 158, 375, 397, 496, 565
BspACI CCGC 3 cut(s) 327, 368, 563
BspDI ATCGAT 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 348, 425
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 4 cut(s) 89, 315, 505, 647
BssMI GATC 6 cut(s) 154, 158, 375, 397, 496, 565
BssNI GRCGYC 1 cut(s) 575
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 4 cut(s) 104, 289, 394, 465
Bst6I CTCTTC 2 cut(s) 90, 449
BstACI GRCGYC 1 cut(s) 575
BstC8I GCNNGC 6 cut(s) 331, 433, 543, 561, 573, 684
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 6 cut(s) 157, 161, 378, 400, 499, 568
BstMAI GTCTC 4 cut(s) 87, 221, 328, 359
BstMBI GATC 6 cut(s) 154, 158, 375, 397, 496, 565
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 3 cut(s) 339, 547, 556
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 3 cut(s) 363, 505, 646
BstV2I GAAGAC 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 157
BsuTUI ATCGAT 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 205
BtrI CACGTC 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 604
Cac8I GCNNGC 6 cut(s) 331, 433, 543, 561, 573, 684
CaiI CAGNNNCTG 1 cut(s) 176
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 541
ClaI ATCGAT 1 cut(s) 157
CseI GACGC 2 cut(s) 322, 564
Csp6I GTAC 1 cut(s) 534
CviAII CATG 3 cut(s) 166, 443, 683
CviJI RGCY 9 cut(s) 9, 55, 299, 307, 347, 382, 435, 550, 571
CviKI_1 RGCY 9 cut(s) 9, 55, 299, 307, 347, 382, 435, 550, 571
CviQI GTAC 1 cut(s) 534
DpnI GATC 6 cut(s) 156, 160, 377, 399, 498, 567
DpnII GATC 6 cut(s) 154, 158, 375, 397, 496, 565
Eam1104I CTCTTC 2 cut(s) 90, 449
EarI CTCTTC 2 cut(s) 90, 449
EciI GGCGGA 2 cut(s) 316, 578
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 382
EcoICRI GAGCTC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 89
Esp3I CGTCTC 2 cut(s) 328, 359
FaeI CATG 3 cut(s) 169, 446, 686
FaiI YATR 8 cut(s) 71, 167, 275, 413, 444, 557, 684, 772
FalI AAGNNNNNCTT 1 cut(s) 752
FaqI GGGAC 1 cut(s) 460
FatI CATG 3 cut(s) 165, 442, 682
FblI GTMKAC 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 384
FspBI CTAG 3 cut(s) 90, 254, 432
GlaI GCGC 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 211
HapII CCGG 4 cut(s) 365, 507, 518, 542
HgaI GACGC 2 cut(s) 322, 564
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 575
Hin1II CATG 3 cut(s) 169, 446, 686
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 6 cut(s) 22, 47, 247, 418, 695, 742
HpaII CCGG 4 cut(s) 365, 507, 518, 542
HphI GGTGA 4 cut(s) 17, 382, 521, 626
Hpy166II GTNNAC 3 cut(s) 107, 337, 461
Hpy188I TCNGA 3 cut(s) 230, 423, 700
Hpy188III TCNNGA 3 cut(s) 373, 676, 739
Hpy8I GTNNAC 3 cut(s) 107, 337, 461
Hpy99I CGWCG 2 cut(s) 338, 341
HpyAV CCTTC 1 cut(s) 727
HpyCH4III ACNGT 4 cut(s) 104, 289, 394, 465
HpyCH4IV ACGT 3 cut(s) 118, 352, 659
HpyCH4V TGCA 5 cut(s) 4, 19, 559, 605, 753
HpyF10VI GCNNNNNNNGC 3 cut(s) 339, 547, 556
HpySE526I ACGT 3 cut(s) 118, 352, 659
Hsp92I GRCGYC 1 cut(s) 575
Hsp92II CATG 3 cut(s) 169, 446, 686
HspAI GCGC 1 cut(s) 208
KroI GCCGGC 1 cut(s) 541
KroNI GCCGGC 1 cut(s) 543
Kzo9I GATC 6 cut(s) 154, 158, 375, 397, 496, 565
LmnI GCTCC 1 cut(s) 352
LweI GCATC 3 cut(s) 481, 592, 614
MaeI CTAG 3 cut(s) 90, 254, 432
MaeII ACGT 3 cut(s) 118, 352, 659
MaeIII GTNAC 1 cut(s) 576
MalI GATC 6 cut(s) 156, 160, 377, 399, 498, 567
MboI GATC 6 cut(s) 154, 158, 375, 397, 496, 565
MboII GAAGA 4 cut(s) 77, 242, 250, 466
MfeI CAATTG 1 cut(s) 707
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 3 cut(s) 589, 617, 707
MlyI GAGTC 2 cut(s) 56, 751
MmeI TCCRAC 1 cut(s) 466
MnlI CCTC 6 cut(s) 281, 325, 419, 467, 516, 645
Mph1103I ATGCAT 1 cut(s) 607
MroNI GCCGGC 1 cut(s) 541
MseI TTAA 1 cut(s) 284
MspI CCGG 4 cut(s) 365, 507, 518, 542
MspR9I CCNGG 3 cut(s) 365, 507, 648
MunI CAATTG 1 cut(s) 707
Mva1269I GAATGC 2 cut(s) 642, 707
MvaI CCWGG 1 cut(s) 648
MwoI GCNNNNNNNGC 3 cut(s) 339, 547, 556
NaeI GCCGGC 1 cut(s) 543
NciI CCSGG 2 cut(s) 365, 507
NdeII GATC 6 cut(s) 154, 158, 375, 397, 496, 565
NgoMIV GCCGGC 1 cut(s) 541
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 3 cut(s) 169, 446, 686
NlaIV GGNNCC 2 cut(s) 348, 425
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 576
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 1 cut(s) 686
PaeI GCATGC 1 cut(s) 686
PctI GAATGC 2 cut(s) 642, 707
PdiI GCCGGC 1 cut(s) 543
PfeI GAWTC 4 cut(s) 22, 247, 418, 695
PleI GAGTC 2 cut(s) 55, 750
PpsI GAGTC 2 cut(s) 55, 750
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 2 cut(s) 348, 425
PstNI CAGNNNCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
SacI GAGCTC 1 cut(s) 384
SalI GTCGAC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 284
Sau3AI GATC 6 cut(s) 154, 158, 375, 397, 496, 565
SchI GAGTC 2 cut(s) 56, 751
ScrFI CCNGG 3 cut(s) 365, 507, 648
SduI GDGCHC 1 cut(s) 384
SfaNI GCATC 3 cut(s) 481, 592, 614
SgrDI CGTCGACG 1 cut(s) 335
SphI GCATGC 1 cut(s) 686
Sse9I AATT 3 cut(s) 589, 617, 707
SsiI CCGC 3 cut(s) 327, 368, 563
SspMI CTAG 3 cut(s) 90, 254, 432
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 3 cut(s) 363, 505, 646
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 4 cut(s) 104, 289, 394, 465
TaiI ACGT 3 cut(s) 121, 355, 662
TaqI TCGA 5 cut(s) 157, 336, 378, 472, 608
TaqII GACCGA 1 cut(s) 307
TasI AATT 3 cut(s) 589, 617, 707
TfiI GAWTC 4 cut(s) 22, 247, 418, 695
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 1 cut(s) 576
Tsp45I GTSAC 1 cut(s) 576
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 604
XapI RAATTY 1 cut(s) 617
XceI RCATGY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 713
XmaJI CCTAGG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 3 cut(s) 90, 254, 432
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.