FvH4_6g09280

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013238
Physical Location & Seq
Forward (+)
5511422 .. 5513010
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09280.t1

Sequence Viewer

Length: 609 bp
ATGACAGAAACTCCCACAGACAACAAACCCAACAAGCGAAATCGCCCATGTCTTATTGCCATAGGAGTTGTCCTGTTTCTGATCCTGTTGATGTTCATCATCTGCCTCATACTTGCCCTCACCGTTTTCAAGCCCAAACAGCCGAGAACCACCCTCGTCTCCGCCACCGTCGACGGCGTGGCTCCACTTGTCTCGTTCCCGGCGGTCAATATCAGGCTCAACATCTCCGTTGGTCTTGTTCTCCTCATAGAGAATAGGAACCACGCTAGCTTCAAACATGGGACAGGGAAGAGTTTACTGCTGTACAGAGGAGTTCAGGTTGGAGATGCTGATCTTTACCCTGGTGAGATTCCGGCGAGGGGTAATGGTACGATGTCGGCGAAGCTGACTATGCAGGCGGATCGGCTGGCGTCGGATATGAACAATTTGGTCACTGATGCATTAGGTGGTGAATTCGTCATTGAAGTAAAGTCGAGCGTTCCGGGGAGGATTACTTTCTTGGGGTTCATCAAGAAGCATGCAGTTGCTGTATCTGAATGCGAATTGACTGTTGGGGTTCCCAATTTTAAGATCAAGAATCAAGTTTGCAAAAACAAGACCAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

203

Amino Acids

21.88

Weight (kDa)

9.69

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 81 - 175 2.5e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05975
fragaria_vesca FvH4_6g09280
malus_domestica MD04G1179300.v1.1 MD12G1194400.v1.1
prunus_persica Prupe.6G299100_v2.0.a1
pyrus_communis pycom04g15840 pycom12g18060
rosa_chinensis RchiOBHm_Chr3g0459661
rosa_laevigata RLG00000025069
rosa_multiflora Rmu_sc0000240.1_g000019
rosa_roxburghii Rroxscaffold_6G00420100
rosa_rugosa Rorug03G0036900
rosa_samantha Rh3AG095800 Rh3BG098300 Rh3CG100300 Rh3DG099700
rosa_wichuraiana Rw0G013780 Rw0G017640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AciI CCGC 3 cut(s) 162, 203, 398
AclWI GGATC 2 cut(s) 76, 408
AcsI RAATTY 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 2 cut(s) 305, 370
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 3 cut(s) 130, 274, 464
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 3 cut(s) 270, 385, 604
AluI AGCT 3 cut(s) 270, 385, 604
Alw26I GTCTC 2 cut(s) 163, 196
AlwI GGATC 2 cut(s) 76, 408
AlwNI CAGNNNCTG 1 cut(s) 527
ApoI RAATTY 1 cut(s) 452
AsuC2I CCSGG 2 cut(s) 200, 483
AsuHPI GGTGA 3 cut(s) 112, 356, 461
AsuNHI GCTAGC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 1 cut(s) 342
BcnI CCSGG 2 cut(s) 200, 483
BcoDI GTCTC 2 cut(s) 163, 196
BfaI CTAG 1 cut(s) 267
Bme1390I CCNGG 3 cut(s) 200, 342, 483
BmiI GGNNCC 3 cut(s) 183, 260, 558
BmrFI CCNGG 3 cut(s) 200, 342, 483
BmsI GCATC 2 cut(s) 316, 427
BmtI GCTAGC 1 cut(s) 270
BpuMI CCSGG 2 cut(s) 200, 483
BsaBI GATNNNNATC 2 cut(s) 95, 330
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 340, 482
BsaXI ACNNNNNCTCC 3 cut(s) 25, 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse8I GATNNNNATC 2 cut(s) 95, 330
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 340, 482
BseJI GATNNNNATC 2 cut(s) 95, 330
BseLI CCNNNNNNNGG 1 cut(s) 359
BseRI GAGGAG 2 cut(s) 233, 324
BsiSI CCGG 3 cut(s) 200, 353, 482
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 2 cut(s) 163, 196
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 542
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 4 cut(s) 81, 331, 400, 570
BspACI CCGC 3 cut(s) 162, 203, 398
BspLI GGNNCC 3 cut(s) 183, 260, 558
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 2 cut(s) 76, 408
BsrGI TGTACA 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 340, 482
BssMI GATC 4 cut(s) 81, 331, 400, 570
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 3 cut(s) 124, 169, 550
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 4 cut(s) 268, 396, 408, 519
BstKTI GATC 4 cut(s) 84, 334, 403, 573
BstMAI GTCTC 2 cut(s) 163, 196
BstMBI GATC 4 cut(s) 81, 331, 400, 570
BstMWI GCNNNNNNNGC 2 cut(s) 139, 391
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 198, 340, 481
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 4 cut(s) 268, 396, 408, 519
CaiI CAGNNNCTG 1 cut(s) 527
CseI GACGC 1 cut(s) 399
Csp6I GTAC 2 cut(s) 304, 369
CviAII CATG 3 cut(s) 48, 278, 518
CviJI RGCY 8 cut(s) 133, 142, 182, 217, 270, 385, 406, 604
CviKI_1 RGCY 8 cut(s) 133, 142, 182, 217, 270, 385, 406, 604
CviQI GTAC 2 cut(s) 304, 369
DpnI GATC 4 cut(s) 83, 333, 402, 572
DpnII GATC 4 cut(s) 81, 331, 400, 570
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 2 cut(s) 151, 413
EcoRI GAATTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 3 cut(s) 51, 281, 521
FaiI YATR 9 cut(s) 49, 62, 110, 248, 279, 392, 419, 519, 607
FaqI GGGAC 1 cut(s) 295
FatI CATG 3 cut(s) 47, 277, 517
FblI GTMKAC 1 cut(s) 171
FspBI CTAG 1 cut(s) 267
HapII CCGG 3 cut(s) 200, 353, 482
HgaI GACGC 1 cut(s) 399
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 3 cut(s) 51, 281, 521
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 349, 577
HpaII CCGG 3 cut(s) 200, 353, 482
HphI GGTGA 3 cut(s) 112, 356, 461
Hpy166II GTNNAC 2 cut(s) 172, 296
Hpy188I TCNGA 3 cut(s) 81, 415, 535
Hpy188III TCNNGA 2 cut(s) 511, 574
Hpy8I GTNNAC 2 cut(s) 172, 296
Hpy99I CGWCG 3 cut(s) 173, 176, 415
HpyCH4III ACNGT 3 cut(s) 124, 169, 550
HpyCH4V TGCA 4 cut(s) 394, 440, 521, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 391
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 3 cut(s) 51, 281, 521
Kzo9I GATC 4 cut(s) 81, 331, 400, 570
LmnI GCTCC 1 cut(s) 187
LweI GCATC 2 cut(s) 316, 427
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 430
MalI GATC 4 cut(s) 83, 333, 402, 572
MboI GATC 4 cut(s) 81, 331, 400, 570
MboII GAAGA 1 cut(s) 301
MluCI AATT 4 cut(s) 424, 452, 542, 562
MmeI TCCRAC 2 cut(s) 301, 393
MnlI CCTC 7 cut(s) 116, 128, 164, 254, 302, 351, 480
Mph1103I ATGCAT 1 cut(s) 442
MseI TTAA 1 cut(s) 567
MspI CCGG 3 cut(s) 200, 353, 482
MspR9I CCNGG 3 cut(s) 200, 342, 483
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 139, 391
NciI CCSGG 2 cut(s) 200, 483
NdeII GATC 4 cut(s) 81, 331, 400, 570
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 3 cut(s) 51, 281, 521
NlaIV GGNNCC 3 cut(s) 183, 260, 558
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 521
PaeI GCATGC 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 2 cut(s) 349, 577
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 183, 260, 558
PstNI CAGNNNCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 305, 370
RsaNI GTAC 2 cut(s) 304, 369
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 567
Sau3AI GATC 4 cut(s) 81, 331, 400, 570
ScrFI CCNGG 3 cut(s) 200, 342, 483
SetI ASST 5 cut(s) 272, 321, 387, 448, 606
SfaNI GCATC 2 cut(s) 316, 427
SgrDI CGTCGACG 1 cut(s) 170
SphI GCATGC 1 cut(s) 521
Sse9I AATT 4 cut(s) 424, 452, 542, 562
SsiI CCGC 3 cut(s) 162, 203, 398
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 3 cut(s) 198, 340, 481
TaaI ACNGT 3 cut(s) 124, 169, 550
TaqI TCGA 2 cut(s) 171, 473
TasI AATT 4 cut(s) 424, 452, 542, 562
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 2 cut(s) 349, 577
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 85, 434, 496
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 452
XceI RCATGY 1 cut(s) 521
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.