Prupe.6G299100_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013238
Physical Location & Seq
Reverse (-)
27239983 .. 27240594
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G299100.1

Sequence Viewer

Length: 612 bp
ATGACAGAAAACAGCGACCACCTCACCAAACCCAACAAGAGAAAGCGCTCCTGTCTCATTGCAATTGGGGTTGTCCTCTTCTTAATCCTGCTGCTCTTCATCATTGCCTTGATCTTGGCCTTAACTGTGTTCAAGACCAAACAGCCAAGAACCCAGATCCTGTCTGCATCTGTCGACGGCGTGGCTCCTCGTATCTCATTCCCCGCCGTTCAGATTGAGCTCAACATCACTCTCGACCTCATGATCCTTGTGGAGAACAGAAACCACGCCAGCTTCAAGCATGGCACTGGCAAGACTTTTCTTCTGTACCAAGGCAACCAGGTAGGTGATGCTGACTTGTACCCGGGTTTTATCCCAGCGAGGGGCAACTCCACGCTGCCGTGCCGCCTTACGCTGCAGGCGGACCGGCTGGCGAACAACATGAGCAACTTGATCAGTGATGTGCTTGGTGGTGAGTTTGTGCTGGAAACACGTACGAGGATCCCGGGCAGGGTTACCTTGCTGGGGTTCATCAAGAAGCATGCTGTGGCTGTATCCGAGTGCCAATTGACCATTGGTTTTCCTGACATGACGGTGAAGAGGCAAGTTTGTAAAAGCAAGGCCAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

204

Amino Acids

22.37

Weight (kDa)

9.87

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05975
fragaria_vesca FvH4_6g09280
malus_domestica MD04G1179300.v1.1 MD12G1194400.v1.1
prunus_persica Prupe.6G299100_v2.0.a1
pyrus_communis pycom04g15840 pycom12g18060
rosa_chinensis RchiOBHm_Chr3g0459661
rosa_laevigata RLG00000025069
rosa_multiflora Rmu_sc0000240.1_g000019
rosa_roxburghii Rroxscaffold_6G00420100
rosa_rugosa Rorug03G0036900
rosa_samantha Rh3AG095800 Rh3BG098300 Rh3CG100300 Rh3DG099700
rosa_wichuraiana Rw0G013780 Rw0G017640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AciI CCGC 3 cut(s) 204, 385, 401
AclWI GGATC 4 cut(s) 151, 238, 475, 488
AfaI GTAC 3 cut(s) 308, 341, 475
AfeI AGCGCT 1 cut(s) 47
AfiI CCNNNNNNNGG 4 cut(s) 361, 362, 490, 504
AflIII ACRYGT 1 cut(s) 470
AgsI TTSAA 2 cut(s) 133, 277
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 2 cut(s) 220, 273
AluI AGCT 2 cut(s) 220, 273
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 4 cut(s) 151, 238, 475, 488
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 2 cut(s) 343, 484
Aor51HI AGCGCT 1 cut(s) 47
AoxI GGCC 2 cut(s) 117, 600
ApeKI GCWGC 3 cut(s) 91, 376, 394
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 403
AsuC2I CCSGG 4 cut(s) 344, 345, 485, 486
AsuHPI GGTGA 4 cut(s) 16, 338, 464, 586
AvaI CYCGRG 2 cut(s) 343, 484
AvaII GGWCC 1 cut(s) 403
BamHI GGATCC 1 cut(s) 480
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 78, 363, 381
BceAI ACGGC 3 cut(s) 191, 193, 364
BciT130I CCWGG 1 cut(s) 320
BciVI GTATCC 1 cut(s) 544
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 4 cut(s) 344, 345, 485, 486
BcoDI GTCTC 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 49
BfuI GTATCC 1 cut(s) 544
BisI GCNGC 4 cut(s) 92, 377, 385, 395
BlsI GCNGC 4 cut(s) 93, 378, 386, 396
Bme1390I CCNGG 5 cut(s) 320, 344, 345, 485, 486
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 2 cut(s) 343, 484
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 2 cut(s) 186, 482
BmrFI CCNGG 5 cut(s) 320, 344, 345, 485, 486
BmsI GCATC 2 cut(s) 176, 319
BpuMI CCSGG 4 cut(s) 344, 345, 485, 486
BsaAI YACGTR 1 cut(s) 473
BsaJI CCNNGG 3 cut(s) 310, 343, 484
Bsc4I CCNNNNNNNGG 4 cut(s) 361, 362, 490, 504
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 2 cut(s) 57, 102
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 3 cut(s) 310, 343, 484
BseLI CCNNNNNNNGG 4 cut(s) 361, 362, 490, 504
BseMI GCAATG 2 cut(s) 57, 102
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 3 cut(s) 78, 363, 381
BseYI CCCAGC 2 cut(s) 355, 502
BshFI GGCC 2 cut(s) 119, 602
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 2 cut(s) 343, 484
BsiSI CCGG 3 cut(s) 344, 406, 485
BsiWI CGTACG 1 cut(s) 473
BslI CCNNNNNNNGG 4 cut(s) 361, 362, 490, 504
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 2 cut(s) 119, 602
BsoBI CYCGRG 2 cut(s) 343, 484
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 5 cut(s) 111, 156, 243, 432, 480
BspACI CCGC 3 cut(s) 204, 385, 401
BspANI GGCC 2 cut(s) 119, 602
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 186, 482
BspMAI CTGCAG 1 cut(s) 399
BspPI GGATC 4 cut(s) 151, 238, 475, 488
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 57, 102
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 3 cut(s) 310, 343, 484
BssMI GATC 5 cut(s) 111, 156, 243, 432, 480
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 127, 574
Bst6I CTCTTC 3 cut(s) 83, 101, 572
BstBAI YACGTR 1 cut(s) 473
BstC8I GCNNGC 4 cut(s) 271, 399, 411, 522
BstEII GGTNACC 1 cut(s) 493
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 5 cut(s) 114, 159, 246, 435, 483
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 5 cut(s) 111, 156, 243, 432, 480
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 524
BstPI GGTNACC 1 cut(s) 493
BstSCI CCNGG 5 cut(s) 318, 342, 343, 483, 484
BstSFI CTRYAG 1 cut(s) 395
BstV1I GCAGC 3 cut(s) 78, 363, 381
BstX2I RGATCY 2 cut(s) 156, 480
BstYI RGATCY 2 cut(s) 156, 480
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 2 cut(s) 119, 602
BtsIMutI CAGTG 2 cut(s) 285, 442
Cac8I GCNNGC 4 cut(s) 271, 399, 411, 522
CaiI CAGNNNCTG 1 cut(s) 160
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 48
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 403
Cfr9I CCCGGG 2 cut(s) 343, 484
CpoI CGGWCCG 1 cut(s) 403
CsiI ACCWGGT 1 cut(s) 318
Csp6I GTAC 3 cut(s) 307, 340, 474
CspI CGGWCCG 1 cut(s) 403
CviAII CATG 5 cut(s) 241, 281, 421, 521, 568
CviJI RGCY 8 cut(s) 119, 145, 185, 220, 273, 409, 530, 602
CviKI_1 RGCY 8 cut(s) 119, 145, 185, 220, 273, 409, 530, 602
CviQI GTAC 3 cut(s) 307, 340, 474
DpnI GATC 5 cut(s) 113, 158, 245, 434, 482
DpnII GATC 5 cut(s) 111, 156, 243, 432, 480
Eam1104I CTCTTC 3 cut(s) 83, 101, 572
EarI CTCTTC 3 cut(s) 83, 101, 572
EciI GGCGGA 1 cut(s) 416
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 403
Eco47III AGCGCT 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 2 cut(s) 343, 484
Eco91I GGTNACC 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 5 cut(s) 244, 284, 424, 524, 571
FaiI YATR 5 cut(s) 242, 282, 422, 522, 569
FatI CATG 5 cut(s) 240, 280, 420, 520, 567
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 1 cut(s) 432
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 92, 377, 385, 395
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 4 cut(s) 92, 377, 385, 395
GlaI GCGC 1 cut(s) 47
GluI GCNGC 4 cut(s) 92, 377, 385, 395
GsaI CCCAGC 2 cut(s) 359, 506
HaeII RGCGCY 1 cut(s) 49
HaeIII GGCC 2 cut(s) 119, 602
HapII CCGG 3 cut(s) 344, 406, 485
HhaI GCGC 1 cut(s) 48
Hin1II CATG 5 cut(s) 244, 284, 424, 524, 571
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HpaII CCGG 3 cut(s) 344, 406, 485
HphI GGTGA 4 cut(s) 16, 338, 464, 586
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 213, 538
Hpy188III TCNNGA 5 cut(s) 133, 233, 241, 514, 563
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 127, 574
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 3 cut(s) 62, 167, 397
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 5 cut(s) 244, 284, 424, 524, 571
HspAI GCGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 5 cut(s) 111, 156, 243, 432, 480
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 2 cut(s) 53, 190
Lsp1109I GCAGC 3 cut(s) 78, 363, 381
LweI GCATC 2 cut(s) 176, 319
MabI ACCWGGT 1 cut(s) 318
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 1 cut(s) 493
MalI GATC 5 cut(s) 113, 158, 245, 434, 482
MboI GATC 5 cut(s) 111, 156, 243, 432, 480
MboII GAAGA 4 cut(s) 70, 88, 293, 589
MfeI CAATTG 2 cut(s) 63, 545
MflI RGATCY 2 cut(s) 156, 480
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 63, 545
MnlI CCTC 7 cut(s) 32, 86, 198, 248, 354, 471, 573
MseI TTAA 2 cut(s) 83, 122
MslI CAYNNNNRTG 1 cut(s) 572
MspI CCGG 3 cut(s) 344, 406, 485
MspR9I CCNGG 5 cut(s) 320, 344, 345, 485, 486
MunI CAATTG 2 cut(s) 63, 545
MvaI CCWGG 1 cut(s) 320
NciI CCSGG 4 cut(s) 344, 345, 485, 486
NdeII GATC 5 cut(s) 111, 156, 243, 432, 480
NlaIII CATG 5 cut(s) 244, 284, 424, 524, 571
NlaIV GGNNCC 2 cut(s) 186, 482
NspI RCATGY 1 cut(s) 524
PaeI GCATGC 1 cut(s) 524
PagI TCATGA 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 101
Pfl23II CGTACG 1 cut(s) 473
PkrI GCNGC 4 cut(s) 93, 378, 386, 396
Ppu21I YACGTR 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 318
PspEI GGTNACC 1 cut(s) 493
PspFI CCCAGC 2 cut(s) 355, 502
PspGI CCWGG 1 cut(s) 318
PspLI CGTACG 1 cut(s) 473
PspN4I GGNNCC 2 cut(s) 186, 482
PspPI GGNCC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 399
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 2 cut(s) 156, 480
RsaI GTAC 3 cut(s) 308, 341, 475
RsaNI GTAC 3 cut(s) 307, 340, 474
RseI CAYNNNNRTG 1 cut(s) 572
Rsr2I CGGWCCG 1 cut(s) 403
RsrII CGGWCCG 1 cut(s) 403
SacI GAGCTC 1 cut(s) 222
SalI GTCGAC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 83, 122
SatI GCNGC 4 cut(s) 92, 377, 385, 395
Sau3AI GATC 5 cut(s) 111, 156, 243, 432, 480
Sau96I GGNCC 1 cut(s) 403
ScrFI CCNGG 5 cut(s) 320, 344, 345, 485, 486
SduI GDGCHC 1 cut(s) 222
SetI ASST 8 cut(s) 24, 222, 240, 275, 324, 328, 475, 500
SexAI ACCWGGT 1 cut(s) 318
SfaNI GCATC 2 cut(s) 176, 319
SfcI CTRYAG 1 cut(s) 395
SinI GGWCC 1 cut(s) 403
SmaI CCCGGG 2 cut(s) 345, 486
SmiMI CAYNNNNRTG 1 cut(s) 572
SphI GCATGC 1 cut(s) 524
Sse9I AATT 2 cut(s) 63, 545
SsiI CCGC 3 cut(s) 204, 385, 401
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 5 cut(s) 318, 342, 343, 483, 484
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 127, 574
TaiI ACGT 1 cut(s) 475
TaqI TCGA 2 cut(s) 174, 234
TasI AATT 2 cut(s) 63, 545
TauI GCSGC 1 cut(s) 387
Tru1I TTAA 2 cut(s) 83, 122
Tru9I TTAA 2 cut(s) 83, 122
TscAI CASTG 2 cut(s) 292, 442
TseI GCWGC 3 cut(s) 91, 376, 394
TspDTI ATGAA 2 cut(s) 88, 499
TspMI CCCGGG 2 cut(s) 343, 484
TspRI CASTG 2 cut(s) 292, 442
VpaK11BI GGWCC 1 cut(s) 403
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XmaI CCCGGG 2 cut(s) 343, 484
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.