AT3G05980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016049
Physical Location & Seq
Forward (+)
1795145 .. 1796493
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05980.1

Sequence Viewer

Length: 738 bp
ATGGTTTTAGAGACGGTTTCAAAGACGGAACCACCACCGTTGCTTGGACCTCGTATCTCCTTCTCATCTGATTTATCTGACGGTGGAGATTTCATCTGCATCACCCCCGTAATGTGTAAGGAAGATGTCGTCAAAGGGTCAGTGAAAGTCTCCGACTTTGAGTTCTTGTCGTCGGAAAATGTGAGTCCACAGAGAATGCTTACCGCCGATGAACTCTTCTCCGAAGGTAAATTGCTTCCTTTTTGGCAAGTAAAGCACTCAGAGAAGCTTAAAAACATTACTTTGAAGACGAACGAAGAGGAAGAAGCAGAGAAACGTAAAGTGGAAGTGAAGAAGAAAGATCAGGAGATTAACAATAGAGATAACAGAGTGACTTGGTTTATAGACGAAGATCCGTCTCCTCGTCCTCCCAAGTGTACCGTTCTTTGGAAAGAGCTTTTGAGATTGAAGAAACAGAGGAATCCGTCTTCTTCGCCGGTGACGGCGAGGACAGTGTCGTCTTTGTCTCCGTCGTCGTCCACGTCATCATCAAGTTCACTTGAGGACGCAGCGAAGAGAGAGGAGAAAGAGAAAGAAGGGAAGAGAGGTAAGAAAGGATTAGAGAGAACGAGATCGGCGAGTATGAGGATAAGGCCAATGATTCATGTTCCTATTTGCACTCCTTCTAAATCCTCTCTTCCTTTGCCTCCTCTGTTTCCTCTTTCGCTTAAGAAAAACAGAGTAGAGAGACGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.65

Weight (kDa)

9.46

Isoelectric Point (pI)

61.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05980
fragaria_vesca FvH4_4g15060
malus_domestica MD13G1188400.v1.1 MD16G1188800.v1.1
prunus_persica Prupe.1G155500_v2.0.a1
pyrus_communis pycom13g16270 pycom16g15880
rosa_chinensis RchiOBHm_Chr4g0416801
rosa_laevigata RLG00000007949
rosa_multiflora Rmu_co8456203.1_g000001 Rmu_sc0015663.1_g000002
rosa_roxburghii Rroxscaffold_5G00360680
rosa_rugosa Rorug04G0145000
rosa_samantha Rh4CG218500
rosa_wichuraiana Rw4G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 496
AccII CGCG 1 cut(s) 732
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 386
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 44, 426
AflII CTTAAG 1 cut(s) 707
AgsI TTSAA 3 cut(s) 21, 286, 448
AjiI CACGTC 1 cut(s) 522
AluBI AGCT 2 cut(s) 268, 436
AluI AGCT 2 cut(s) 268, 436
Alw26I GTCTC 5 cut(s) 5, 154, 402, 510, 721
AlwI GGATC 1 cut(s) 386
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 94, 490
AvaII GGWCC 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 293, 459
BbvI GCAGC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 498
BcoDI GTCTC 5 cut(s) 5, 154, 402, 510, 721
BfaI CTAG 1 cut(s) 736
BfrI CTTAAG 1 cut(s) 707
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
Bme18I GGWCC 1 cut(s) 47
BmgBI CACGTC 1 cut(s) 522
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 2 cut(s) 293, 459
BpuEI CTTGAG 1 cut(s) 560
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 426
Bse118I RCCGGY 1 cut(s) 475
BseLI CCNNNNNNNGG 2 cut(s) 44, 426
BseMII CTCAG 1 cut(s) 273
BseRI GAGGAG 3 cut(s) 390, 575, 678
BseXI GCAGC 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 1 cut(s) 634
BsiSI CCGG 1 cut(s) 476
BslI CCNNNNNNNGG 2 cut(s) 44, 426
BsmAI GTCTC 5 cut(s) 5, 154, 402, 510, 721
BsmBI CGTCTC 3 cut(s) 5, 402, 721
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 1 cut(s) 634
Bsp143I GATC 3 cut(s) 340, 391, 611
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 272
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 386
BspTI CTTAAG 1 cut(s) 707
BsrFI RCCGGY 1 cut(s) 475
BssAI RCCGGY 1 cut(s) 475
BssMI GATC 3 cut(s) 340, 391, 611
Bst4CI ACNGT 5 cut(s) 16, 39, 83, 421, 493
Bst6I CTCTTC 5 cut(s) 221, 291, 548, 575, 681
BstAFI CTTAAG 1 cut(s) 707
BstDEI CTNAG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 3 cut(s) 343, 394, 614
BstMAI GTCTC 5 cut(s) 5, 154, 402, 510, 721
BstMBI GATC 3 cut(s) 340, 391, 611
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 1 cut(s) 560
BstV2I GAAGAC 2 cut(s) 293, 459
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 1 cut(s) 634
BtrI CACGTC 1 cut(s) 522
BtsIMutI CAGTG 2 cut(s) 147, 498
CfoI GCGC 1 cut(s) 734
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 554
Csp6I GTAC 1 cut(s) 417
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 1 cut(s) 644
CviJI RGCY 3 cut(s) 268, 436, 634
CviKI_1 RGCY 3 cut(s) 268, 436, 634
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 1 cut(s) 259
DpnI GATC 3 cut(s) 342, 393, 613
DpnII GATC 3 cut(s) 340, 391, 611
DrdI GACNNNNNNGTC 1 cut(s) 496
DseDI GACNNNNNNGTC 1 cut(s) 496
Eam1104I CTCTTC 5 cut(s) 221, 291, 548, 575, 681
EarI CTCTTC 5 cut(s) 221, 291, 548, 575, 681
Eco47I GGWCC 1 cut(s) 47
Esp3I CGTCTC 3 cut(s) 5, 402, 721
FaeI CATG 1 cut(s) 647
FaiI YATR 3 cut(s) 383, 623, 645
FatI CATG 1 cut(s) 643
Fnu4HI GCNGC 1 cut(s) 549
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 1 cut(s) 736
GlaI GCGC 1 cut(s) 733
GluI GCNGC 1 cut(s) 549
HaeIII GGCC 1 cut(s) 634
HapII CCGG 1 cut(s) 476
HgaI GACGC 1 cut(s) 554
HhaI GCGC 1 cut(s) 734
Hin1II CATG 1 cut(s) 647
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 3 cut(s) 184, 460, 640
HpaII CCGG 1 cut(s) 476
HphI GGTGA 2 cut(s) 94, 490
Hpy166II GTNNAC 4 cut(s) 188, 417, 519, 536
Hpy188I TCNGA 6 cut(s) 70, 79, 154, 175, 223, 262
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 4 cut(s) 188, 417, 519, 536
Hpy99I CGWCG 3 cut(s) 175, 514, 517
HpyAV CCTTC 4 cut(s) 70, 218, 569, 672
HpyCH4III ACNGT 5 cut(s) 16, 39, 83, 421, 493
HpyCH4IV ACGT 2 cut(s) 316, 521
HpyCH4V TGCA 2 cut(s) 99, 657
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 2 cut(s) 316, 521
Hsp92II CATG 1 cut(s) 647
HspAI GCGC 1 cut(s) 732
Kzo9I GATC 3 cut(s) 340, 391, 611
LpnPI CCDG 2 cut(s) 329, 489
Lsp1109I GCAGC 1 cut(s) 560
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 736
MaeII ACGT 2 cut(s) 316, 521
MaeIII GTNAC 2 cut(s) 370, 478
MalI GATC 3 cut(s) 342, 393, 613
MboI GATC 3 cut(s) 340, 391, 611
MflI RGATCY 1 cut(s) 391
MluCI AATT 1 cut(s) 230
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 2 cut(s) 153, 177
MseI TTAA 3 cut(s) 270, 351, 708
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 1 cut(s) 476
Mva1269I GAATGC 1 cut(s) 201
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 3 cut(s) 340, 391, 611
NlaIII CATG 1 cut(s) 647
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 370, 478
PcsI WCGNNNNNNNCGW 2 cut(s) 518, 614
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 460, 640
PflFI GACNNNGTC 1 cut(s) 493
PkrI GCNGC 1 cut(s) 550
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 47
PsuI RGATCY 1 cut(s) 391
PsyI GACNNNGTC 1 cut(s) 493
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
SaqAI TTAA 3 cut(s) 270, 351, 708
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 3 cut(s) 340, 391, 611
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 193
SetI ASST 7 cut(s) 52, 229, 270, 319, 438, 524, 589
SfaNI GCATC 1 cut(s) 108
SgrAI CRCCGGYG 1 cut(s) 475
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 539, 707
SmoI CTYRAG 2 cut(s) 539, 707
Sse9I AATT 1 cut(s) 230
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 736
TaaI ACNGT 5 cut(s) 16, 39, 83, 421, 493
TaiI ACGT 2 cut(s) 319, 524
TasI AATT 1 cut(s) 230
TfiI GAWTC 2 cut(s) 460, 640
Tru1I TTAA 3 cut(s) 270, 351, 708
Tru9I TTAA 3 cut(s) 270, 351, 708
TscAI CASTG 2 cut(s) 147, 498
TseFI GTSAC 2 cut(s) 370, 478
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 2 cut(s) 370, 478
TspDTI ATGAA 3 cut(s) 82, 225, 632
TspGWI ACGGA 4 cut(s) 41, 384, 453, 498
TspRI CASTG 2 cut(s) 147, 498
Tth111I GACNNNGTC 1 cut(s) 493
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 47
XspI CTAG 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.