FvH4_4g15060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016049
Physical Location & Seq
Reverse (-)
18628379 .. 18629515
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15060.t1

Sequence Viewer

Length: 735 bp
ATGGTATCTCTGGAAGTTGTTCAGACAACCTCTAGCATCGAGCCATCTTCAAGTCCCAGGATTTCTTTCTCAGCTGATTTCCTCGACGAAAACGACTTCATCACTATTAGCCCAAATGCTCATGGTGAACTTCAAGACAAGAAAATGGAGTGTGACCAGAAGGCAAGGAATGCAGACTTTGAGTTTCTCTCAAACAATGTGAGTAGCCATACCATGTTAACTGCAGATGAGCTTTTCTTTGAAGGAAAGCTCCTTCCCTTTTGGCAAAAGCAGCATGCCGAAAGGCTCAACAAGATCCGCCTTAAAACAAAAGACGATGAAATATGCGAGGAGGAGGAAGAGGTAGTGAACAAGGAGGAGAGTAGAGGGAACTGGTTTGTCGATGATGACCCGTCTCCAAGGCCACCTAAGTGCACTGTTTTATGGAAAGAGTTGCTCAGGTTGAAGAAGCAACGTGCTTCAACTCTGTCACCCTCGTCTTCATCCTCGTCTTCATCATCTTCTTCAAACTCGTTTGCTGATGTAGCCGCAGCAGCAGATCAAGTGAAGGAGGCGATGGGAAACAAAGAAAAGTACATGAAGAGGATAAAGAAAGGCCTAGAGAGAACAAGATCAGCCAGCATAAGAATAAGGCCGATGGTTAATGTGCCGATTTGCACACAGATGAAGAACAGTGCCTTACCACCTTTGTTTCCTCTCAGAAAAGGTAGACTAGATAGCATTGATGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.59

Weight (kDa)

6.04

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05980
fragaria_vesca FvH4_4g15060
malus_domestica MD13G1188400.v1.1 MD16G1188800.v1.1
prunus_persica Prupe.1G155500_v2.0.a1
pyrus_communis pycom13g16270 pycom16g15880
rosa_chinensis RchiOBHm_Chr4g0416801
rosa_laevigata RLG00000007949
rosa_multiflora Rmu_co8456203.1_g000001 Rmu_sc0015663.1_g000002
rosa_roxburghii Rroxscaffold_5G00360680
rosa_rugosa Rorug04G0145000
rosa_samantha Rh4CG218500
rosa_wichuraiana Rw4G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 709
AciI CCGC 2 cut(s) 298, 528
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 729
AfaI GTAC 1 cut(s) 575
AgsI TTSAA 6 cut(s) 51, 134, 242, 445, 462, 507
AjnI CCWGG 1 cut(s) 56
AleI CACNNNNGTG 1 cut(s) 409
AluBI AGCT 3 cut(s) 74, 232, 250
AluI AGCT 3 cut(s) 74, 232, 250
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 1 cut(s) 399
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 1 cut(s) 289
AoxI GGCC 3 cut(s) 401, 595, 632
ApaLI GTGCAC 1 cut(s) 412
ApeKI GCWGC 3 cut(s) 271, 530, 533
ApoI RAATTY 1 cut(s) 729
Asp700I GAANNNNTTC 1 cut(s) 18
AsuHPI GGTGA 2 cut(s) 137, 462
BaeGI GKGCMC 1 cut(s) 416
BbsI GAAGAC 2 cut(s) 471, 483
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 283, 542, 545
BccI CCATC 3 cut(s) 52, 550, 631
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 3 cut(s) 33, 599, 713
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 4 cut(s) 272, 528, 531, 534
BlsI GCNGC 4 cut(s) 273, 529, 532, 535
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 2 cut(s) 471, 483
BplI GAGNNNNNCTC 2 cut(s) 173, 205
Bpu10I CCTNAGC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 56, 398
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 56, 398
BseGI GGATG 1 cut(s) 482
BseMII CTCAG 3 cut(s) 84, 451, 712
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 3 cut(s) 344, 347, 371
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 3 cut(s) 283, 542, 545
BshFI GGCC 3 cut(s) 403, 597, 634
BsiHKAI GWGCWC 1 cut(s) 416
BslFI GGGAC 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 399
BsmBI CGTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 3 cut(s) 403, 597, 634
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 3 cut(s) 294, 538, 611
BspACI CCGC 2 cut(s) 298, 528
BspANI GGCC 3 cut(s) 403, 597, 634
BspCNI CTCAG 3 cut(s) 83, 450, 711
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 289
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 56, 398
BssMI GATC 3 cut(s) 294, 538, 611
BssT1I CCWWGG 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 418, 674
Bst6I CTCTTC 2 cut(s) 333, 575
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 276, 619
BstDEI CTNAG 4 cut(s) 70, 408, 437, 698
BstF5I GGATG 1 cut(s) 482
BstKTI GATC 3 cut(s) 297, 541, 614
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 3 cut(s) 294, 538, 611
BstMWI GCNNNNNNNGC 4 cut(s) 170, 271, 524, 533
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 416
BstV1I GCAGC 3 cut(s) 283, 542, 545
BstV2I GAAGAC 2 cut(s) 471, 483
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 3 cut(s) 403, 597, 634
BtgZI GCGATG 1 cut(s) 569
BtsCI GGATG 1 cut(s) 482
BtsIMutI CAGTG 2 cut(s) 414, 679
Cac8I GCNNGC 2 cut(s) 276, 619
Csp6I GTAC 1 cut(s) 574
CviAII CATG 4 cut(s) 122, 214, 275, 577
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 4 cut(s) 70, 408, 437, 698
DpnI GATC 3 cut(s) 296, 540, 613
DpnII GATC 3 cut(s) 294, 538, 611
Eam1104I CTCTTC 2 cut(s) 333, 575
EarI CTCTTC 2 cut(s) 333, 575
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 398
Eco147I AGGCCT 1 cut(s) 597
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 4 cut(s) 125, 217, 278, 580
FaiI YATR 8 cut(s) 123, 210, 215, 276, 325, 424, 578, 623
FaqI GGGAC 1 cut(s) 39
FatI CATG 4 cut(s) 121, 213, 274, 576
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 4 cut(s) 272, 528, 531, 534
FokI GGATG 1 cut(s) 469
Fsp4HI GCNGC 4 cut(s) 272, 528, 531, 534
FspBI CTAG 3 cut(s) 33, 599, 713
GluI GCNGC 4 cut(s) 272, 528, 531, 534
HaeIII GGCC 3 cut(s) 403, 597, 634
Hin1II CATG 4 cut(s) 125, 217, 278, 580
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HpaI GTTAAC 1 cut(s) 219
HphI GGTGA 2 cut(s) 137, 462
Hpy166II GTNNAC 5 cut(s) 128, 219, 349, 414, 710
Hpy188I TCNGA 2 cut(s) 24, 701
Hpy188III TCNNGA 2 cut(s) 11, 134
Hpy8I GTNNAC 5 cut(s) 128, 219, 349, 414, 710
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 4 cut(s) 154, 236, 263, 541
HpyCH4III ACNGT 2 cut(s) 418, 674
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 4 cut(s) 173, 224, 414, 657
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 271, 524, 533
HpyF3I CTNAG 4 cut(s) 70, 408, 437, 698
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 4 cut(s) 125, 217, 278, 580
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 3 cut(s) 294, 538, 611
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 6 cut(s) 43, 70, 170, 358, 424, 631
Lsp1109I GCAGC 3 cut(s) 283, 542, 545
LweI GCATC 1 cut(s) 45
MaeI CTAG 3 cut(s) 33, 599, 713
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 2 cut(s) 152, 468
MalI GATC 3 cut(s) 296, 540, 613
MboI GATC 3 cut(s) 294, 538, 611
MboII GAAGA 9 cut(s) 39, 350, 457, 471, 483, 492, 495, 592, 679
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 1 cut(s) 729
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 3 cut(s) 218, 303, 642
MslI CAYNNNNRTG 2 cut(s) 409, 662
MspA1I CMGCKG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 4 cut(s) 170, 271, 524, 533
NdeII GATC 3 cut(s) 294, 538, 611
NlaIII CATG 4 cut(s) 125, 217, 278, 580
NmuCI GTSAC 2 cut(s) 152, 468
NspI RCATGY 1 cut(s) 278
OliI CACNNNNGTG 1 cut(s) 409
PaeI GCATGC 1 cut(s) 278
PceI AGGCCT 1 cut(s) 597
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 4 cut(s) 273, 529, 532, 535
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 409, 662
SaqAI TTAA 3 cut(s) 218, 303, 642
SatI GCNGC 4 cut(s) 272, 528, 531, 534
Sau3AI GATC 3 cut(s) 294, 538, 611
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 416
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 409, 662
SphI GCATGC 1 cut(s) 278
Sse9I AATT 1 cut(s) 729
SseBI AGGCCT 1 cut(s) 597
SsiI CCGC 2 cut(s) 298, 528
SspMI CTAG 3 cut(s) 33, 599, 713
StuI AGGCCT 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 2 cut(s) 418, 674
TaiI ACGT 1 cut(s) 457
TaqI TCGA 3 cut(s) 39, 84, 381
TasI AATT 1 cut(s) 729
TatI WGTACW 1 cut(s) 573
TauI GCSGC 1 cut(s) 530
Tru1I TTAA 3 cut(s) 218, 303, 642
Tru9I TTAA 3 cut(s) 218, 303, 642
TscAI CASTG 2 cut(s) 421, 679
TseFI GTSAC 2 cut(s) 152, 468
TseI GCWGC 3 cut(s) 271, 530, 533
Tsp45I GTSAC 2 cut(s) 152, 468
TspDTI ATGAA 6 cut(s) 88, 333, 471, 483, 593, 680
TspRI CASTG 2 cut(s) 421, 679
VneI GTGCAC 1 cut(s) 412
XapI RAATTY 1 cut(s) 729
XceI RCATGY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 709
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 3 cut(s) 33, 599, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.