MD13G1188400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016049
Physical Location & Seq
Reverse (-)
16008137 .. 16008862
726 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1188400.v1.1.491

Sequence Viewer

Length: 726 bp
ATGGGGTCCCTAGAAATTGTTCTGGCAAGCCCTATATCTTCCGATTCGATTTTGAGTTCGTGGATTTCATTCTCGGTCGAGTTTCTCGACGATGAGAACTTCATCTCCATCACCCCGAATTCGTACGGCGAAGTACAAGATAAAAAAATGGAGTGTGGTGATCACCAAAAGGTATGTAACCCGAATTTTGAGTTTCTCTCGAGCAATGCGAGCAGCCATGCCATGTTGTCTGCAGATGAGCTATTTTTCGATGGGAAGCTCCTACCCTTTTGGCAAAAGCAGCACGCCGAACAGCTCGCGAAGCTCAACCTCAAGACCAATGATGTTGAGGGAGATGAGAATGAGGAGGTGGTGAACAAGAAGGAGAGCCGAGGGAGTTGGTTTGTGGACGATGATCCATCTCCGAGGCCACCTAAGTGCACAATTTTGTGGAATGAGCTACTAAGACTGAAGAAACAACGCGCTTCATCATTGTCCCCGTCTTCCTCATCCTCGTCTTCCTCTTCTTCCTTGAACTCGTTGGCGGATGTAGCTACGAGGACGGATCAAGAGAAGGAAGGGAACAAAGAGAAGTATATGAAGAAGATAAAAAAAGGGTTGGAAAGAACAAGATCAGCAAGCATAAGAATAAGGCCAATGGTAAATGTGCCAATTTGCACACAAGTGAAGAGTAATGCCTTGCCACCTTTGTTTCCTCTCAGAAAAGGAAGAGTGCTAGGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.97

Weight (kDa)

7.64

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05980
fragaria_vesca FvH4_4g15060
malus_domestica MD13G1188400.v1.1 MD16G1188800.v1.1
prunus_persica Prupe.1G155500_v2.0.a1
pyrus_communis pycom13g16270 pycom16g15880
rosa_chinensis RchiOBHm_Chr4g0416801
rosa_laevigata RLG00000007949
rosa_multiflora Rmu_co8456203.1_g000001 Rmu_sc0015663.1_g000002
rosa_roxburghii Rroxscaffold_5G00360680
rosa_rugosa Rorug04G0145000
rosa_samantha Rh4CG218500
rosa_wichuraiana Rw4G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 299, 462
AciI CCGC 1 cut(s) 524
AclWI GGATC 2 cut(s) 389, 552
AcsI RAATTY 2 cut(s) 118, 184
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 2 cut(s) 125, 135
AgsI TTSAA 1 cut(s) 514
AleI CACNNNNGTG 2 cut(s) 415, 662
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 6 cut(s) 241, 259, 295, 304, 439, 533
AluI AGCT 6 cut(s) 241, 259, 295, 304, 439, 533
Alw21I GWGCWC 1 cut(s) 422
Alw44I GTGCAC 1 cut(s) 418
AlwI GGATC 2 cut(s) 389, 552
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 2 cut(s) 407, 632
ApaLI GTGCAC 1 cut(s) 418
ApeKI GCWGC 2 cut(s) 213, 280
ApoI RAATTY 2 cut(s) 118, 184
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 6
AsuHPI GGTGA 4 cut(s) 103, 155, 170, 364
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 422
BbsI GAAGAC 2 cut(s) 474, 489
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 225, 292
BccI CCATC 3 cut(s) 116, 245, 406
BceAI ACGGC 1 cut(s) 142
BclI TGATCA 1 cut(s) 160
BfaI CTAG 2 cut(s) 11, 716
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 2 cut(s) 214, 281
BlsI GCNGC 2 cut(s) 215, 282
Bme18I GGWCC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 7, 8
BpiI GAAGAC 2 cut(s) 474, 489
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpuEI CTTGAG 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 370, 404
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bse3DI GCAATG 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 370, 404
BseGI GGATG 2 cut(s) 488, 532
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 712
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 2 cut(s) 225, 292
Bsh1236I CGCG 2 cut(s) 299, 462
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 409, 634
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 199
BsiWI CGTACG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 2 cut(s) 409, 634
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 4 cut(s) 160, 394, 544, 611
Bsp68I TCGCGA 1 cut(s) 299
BspACI CCGC 1 cut(s) 524
BspANI GGCC 2 cut(s) 409, 634
BspCNI CTCAG 1 cut(s) 711
BspFNI CGCG 2 cut(s) 299, 462
BspLI GGNNCC 2 cut(s) 7, 8
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 2 cut(s) 389, 552
BsrDI GCAATG 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 370, 404
BssMI GATC 4 cut(s) 160, 394, 544, 611
Bst6I CTCTTC 3 cut(s) 508, 662, 703
BstC8I GCNNGC 5 cut(s) 28, 211, 285, 297, 619
BstDEI CTNAG 3 cut(s) 414, 443, 698
BstF5I GGATG 2 cut(s) 488, 532
BstFNI CGCG 2 cut(s) 299, 462
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 4 cut(s) 163, 397, 547, 614
BstMBI GATC 4 cut(s) 160, 394, 544, 611
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 4 cut(s) 210, 280, 301, 530
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 422
BstUI CGCG 2 cut(s) 299, 462
BstV1I GCAGC 2 cut(s) 225, 292
BstV2I GAAGAC 2 cut(s) 474, 489
BsuRI GGCC 2 cut(s) 409, 634
BtsCI GGATG 2 cut(s) 488, 532
BtuMI TCGCGA 1 cut(s) 299
Cac8I GCNNGC 5 cut(s) 28, 211, 285, 297, 619
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 124, 134
CviAII CATG 2 cut(s) 218, 223
CviQI GTAC 2 cut(s) 124, 134
DdeI CTNAG 3 cut(s) 414, 443, 698
DpnI GATC 4 cut(s) 162, 396, 546, 613
DpnII GATC 4 cut(s) 160, 394, 544, 611
Eam1104I CTCTTC 3 cut(s) 508, 662, 703
EarI CTCTTC 3 cut(s) 508, 662, 703
EciI GGCGGA 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 118
FaeI CATG 2 cut(s) 221, 226
FaiI YATR 7 cut(s) 35, 175, 219, 224, 576, 578, 623
FaqI GGGAC 1 cut(s) 460
FatI CATG 2 cut(s) 217, 222
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 214, 281
FokI GGATG 2 cut(s) 475, 539
Fsp4HI GCNGC 2 cut(s) 214, 281
FspBI CTAG 2 cut(s) 11, 716
GlaI GCGC 1 cut(s) 463
GluI GCNGC 2 cut(s) 214, 281
HaeIII GGCC 2 cut(s) 409, 634
HhaI GCGC 1 cut(s) 464
Hin1II CATG 2 cut(s) 221, 226
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HinfI GANTC 1 cut(s) 44
HphI GGTGA 4 cut(s) 103, 155, 170, 364
Hpy166II GTNNAC 3 cut(s) 355, 388, 420
Hpy188I TCNGA 3 cut(s) 43, 405, 701
Hpy188III TCNNGA 5 cut(s) 86, 199, 298, 313, 548
Hpy8I GTNNAC 3 cut(s) 355, 388, 420
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 355, 547, 551
HpyCH4V TGCA 3 cut(s) 233, 420, 657
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 280, 301, 530
HpyF3I CTNAG 3 cut(s) 414, 443, 698
Hsp92II CATG 2 cut(s) 221, 226
HspAI GCGC 1 cut(s) 462
KflI GGGWCCC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 160, 394, 544, 611
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 1 cut(s) 8
Lsp1109I GCAGC 2 cut(s) 225, 292
MaeI CTAG 2 cut(s) 11, 716
MaeIII GTNAC 1 cut(s) 176
MalI GATC 4 cut(s) 162, 396, 546, 613
MboI GATC 4 cut(s) 160, 394, 544, 611
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 5 cut(s) 15, 118, 184, 423, 651
MmeI TCCRAC 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 18
MslI CAYNNNNRTG 2 cut(s) 415, 662
MvnI CGCG 2 cut(s) 299, 462
MwoI GCNNNNNNNGC 4 cut(s) 210, 280, 301, 530
NdeII GATC 4 cut(s) 160, 394, 544, 611
NlaIII CATG 2 cut(s) 221, 226
NlaIV GGNNCC 2 cut(s) 7, 8
NmeAIII GCCGAG 1 cut(s) 395
NruI TCGCGA 1 cut(s) 299
OliI CACNNNNGTG 2 cut(s) 415, 662
PaeR7I CTCGAG 1 cut(s) 199
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 206
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 44
Pfl23II CGTACG 1 cut(s) 123
PkrI GCNGC 2 cut(s) 215, 282
PpuMI RGGWCCY 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 6
PspLI CGTACG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 7, 8
PspPI GGNCC 1 cut(s) 6
PspPPI RGGWCCY 1 cut(s) 6
PstI CTGCAG 1 cut(s) 235
RruI TCGCGA 1 cut(s) 299
RsaI GTAC 2 cut(s) 125, 135
RsaNI GTAC 2 cut(s) 124, 134
RseI CAYNNNNRTG 2 cut(s) 415, 662
SatI GCNGC 2 cut(s) 214, 281
Sau3AI GATC 4 cut(s) 160, 394, 544, 611
Sau96I GGNCC 1 cut(s) 6
SduI GDGCHC 1 cut(s) 422
SfcI CTRYAG 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 6
SlaI CTCGAG 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 415, 662
SmlI CTYRAG 2 cut(s) 199, 311
SmoI CTYRAG 2 cut(s) 199, 311
Sse9I AATT 5 cut(s) 15, 118, 184, 423, 651
SsiI CCGC 1 cut(s) 524
SspMI CTAG 2 cut(s) 11, 716
TaqI TCGA 5 cut(s) 47, 78, 87, 200, 249
TaqII GACCGA 1 cut(s) 64
TasI AATT 5 cut(s) 15, 118, 184, 423, 651
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 1 cut(s) 44
TseI GCWGC 2 cut(s) 213, 280
TspDTI ATGAA 4 cut(s) 57, 91, 456, 593
TspGWI ACGGA 1 cut(s) 557
VneI GTGCAC 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 6
XapI RAATTY 2 cut(s) 118, 184
XhoI CTCGAG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 2 cut(s) 11, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.