Prupe.1G155500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016049
Physical Location & Seq
Reverse (-)
12282580 .. 12283675
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G155500.1

Sequence Viewer

Length: 771 bp
ATGCATTTGCTCAAAAACACTCTCCACCAACCAGCCCAAAACACAACCAAAATGGTGTCCCTAGAAATTGTTCAGGCAACCTCTAGATCCATGGACACACCTTCCAGCCCCCGGATTTCGTTCTCTGCCGAATTCCTCGACGAAAATAACTTCATCTCCATTACCCCAAATGCCCATCAGGGTGAGCAAGATCTTATAATGGAGTGTGATCAAAAGGTACGTAACCCGGAATTCGAGTTTCTCTCAAGCAATGTGAGTAGCCATACCATGTTATCTGCAGATGAGCTTTTTTTTGAAGGGAAGCTCCTTCCCTTTTGGCAAAAGCAGCATGCTGAGAGGCTCAGCAAACTTAGCCTCAAAACCAAAGATGTTGAGGGAGATGAGAATGAGGAAGGGGTGAACAAGGAGGAGAGCAGAGGGAGTTGGTTTGTTGATGATGACCCCTCTCCAAGGCCACCTAAGTGCACCGTTTTATGGAAAGAGTTGCTGAAGCTGAAGAAGCAGCGTGCTTCGTCGTTGTCCCCGTCTTCTTCTTCCTCCTCTTCGACGTCTTCTTCGAGCTCATTTGCTGATGCAGCAACAGCAGATCAAGAGAAGGAGGGGATGGGGAACAAAGAGAAGTACATGAAGAGGATAAAGAAAGGGTTGGAGAGAACAAGATCAGCCAGTATAAGAATAAGGCCAATGATCAATGTGCCAATTTGCACACAGGTGAAGAGCACTTCCTTGCCACCTTTGTTTCCTCTCAGGAAAGGAAGGCTAGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.85

Weight (kDa)

8.68

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05980
fragaria_vesca FvH4_4g15060
malus_domestica MD13G1188400.v1.1 MD16G1188800.v1.1
prunus_persica Prupe.1G155500_v2.0.a1
pyrus_communis pycom13g16270 pycom16g15880
rosa_chinensis RchiOBHm_Chr4g0416801
rosa_laevigata RLG00000007949
rosa_multiflora Rmu_co8456203.1_g000001 Rmu_sc0015663.1_g000002
rosa_roxburghii Rroxscaffold_5G00360680
rosa_rugosa Rorug04G0145000
rosa_samantha Rh4CG218500
rosa_wichuraiana Rw4G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
AatII GACGTC 1 cut(s) 551
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 2 cut(s) 131, 230
AcuI CTGAAG 2 cut(s) 509, 515
AcyI GRCGYC 1 cut(s) 548
AfaI GTAC 2 cut(s) 219, 623
AfiI CCNNNNNNNGG 3 cut(s) 111, 450, 474
AgsI TTSAA 1 cut(s) 296
AleI CACNNNNGTG 2 cut(s) 460, 710
AluBI AGCT 4 cut(s) 286, 304, 493, 561
AluI AGCT 4 cut(s) 286, 304, 493, 561
Alw21I GWGCWC 3 cut(s) 467, 563, 722
Alw44I GTGCAC 1 cut(s) 463
AlwI GGATC 1 cut(s) 81
AoxI GGCC 2 cut(s) 452, 680
ApaLI GTGCAC 1 cut(s) 463
ApeKI GCWGC 3 cut(s) 325, 502, 575
ApoI RAATTY 2 cut(s) 131, 230
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
Asp700I GAANNNNTTC 1 cut(s) 69
AsuC2I CCSGG 2 cut(s) 112, 227
AsuHPI GGTGA 3 cut(s) 194, 409, 724
BaeGI GKGCMC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 563
BbsI GAAGAC 2 cut(s) 519, 543
Bbv12I GWGCWC 3 cut(s) 467, 563, 722
BbvI GCAGC 3 cut(s) 337, 514, 587
BccI CCATC 2 cut(s) 183, 598
BclI TGATCA 2 cut(s) 208, 687
BcnI CCSGG 2 cut(s) 112, 227
BfaI CTAG 3 cut(s) 62, 84, 761
BfmI CTRYAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 326, 503, 576
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 3 cut(s) 327, 504, 577
Bme1390I CCNGG 2 cut(s) 112, 227
BmrFI CCNGG 2 cut(s) 112, 227
BmsI GCATC 1 cut(s) 562
BpiI GAAGAC 2 cut(s) 519, 543
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu1102I GCTNAGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 2 cut(s) 112, 227
BsaAI YACGTR 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 90, 110, 449
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 450, 474
Bse1I ACTGG 1 cut(s) 666
Bse3DI GCAATG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 90, 110, 449
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 3 cut(s) 111, 450, 474
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 3 cut(s) 324, 355, 760
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 422, 529
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 3 cut(s) 337, 514, 587
BshFI GGCC 2 cut(s) 454, 682
BsiHKAI GWGCWC 3 cut(s) 467, 563, 722
BsiSI CCGG 2 cut(s) 112, 227
BslFI GGGAC 2 cut(s) 43, 505
BslI CCNNNNNNNGG 3 cut(s) 111, 450, 474
BsmFI GGGAC 2 cut(s) 43, 505
BsnI GGCC 2 cut(s) 454, 682
Bsp1286I GDGCHC 3 cut(s) 467, 563, 722
Bsp143I GATC 6 cut(s) 86, 190, 208, 586, 659, 687
Bsp1720I GCTNAGC 1 cut(s) 341
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 2 cut(s) 454, 682
BspCNI CTCAG 3 cut(s) 325, 354, 759
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 256
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 3 cut(s) 90, 110, 449
BssMI GATC 6 cut(s) 86, 190, 208, 586, 659, 687
BssNI GRCGYC 1 cut(s) 548
BssT1I CCWWGG 2 cut(s) 90, 449
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 3 cut(s) 547, 623, 710
BstACI GRCGYC 1 cut(s) 548
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 330, 507
BstDEI CTNAG 5 cut(s) 333, 341, 350, 459, 746
BstDSI CCRYGG 1 cut(s) 90
BstENI CCTNNNNNAGG 1 cut(s) 448
BstF5I GGATG 1 cut(s) 609
BstKTI GATC 6 cut(s) 89, 193, 211, 589, 662, 690
BstMBI GATC 6 cut(s) 86, 190, 208, 586, 659, 687
BstMWI GCNNNNNNNGC 5 cut(s) 325, 351, 499, 575, 581
BstNSI RCATGY 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 110, 225
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 467
BstSNI TACGTA 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 337, 514, 587
BstV2I GAAGAC 2 cut(s) 519, 543
BstX2I RGATCY 2 cut(s) 86, 190
BstYI RGATCY 2 cut(s) 86, 190
BsuRI GGCC 2 cut(s) 454, 682
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 609
Cac8I GCNNGC 2 cut(s) 330, 507
Csp6I GTAC 2 cut(s) 218, 622
CviAII CATG 4 cut(s) 91, 268, 329, 625
CviQI GTAC 2 cut(s) 218, 622
DdeI CTNAG 5 cut(s) 333, 341, 350, 459, 746
DpnI GATC 6 cut(s) 88, 192, 210, 588, 661, 689
DpnII GATC 6 cut(s) 86, 190, 208, 586, 659, 687
Eam1104I CTCTTC 3 cut(s) 547, 623, 710
EarI CTCTTC 3 cut(s) 547, 623, 710
Ecl136II GAGCTC 1 cut(s) 561
Eco105I TACGTA 1 cut(s) 221
Eco130I CCWWGG 2 cut(s) 90, 449
Eco24I GRGCYC 1 cut(s) 563
Eco53kI GAGCTC 1 cut(s) 561
Eco57I CTGAAG 2 cut(s) 509, 515
EcoICRI GAGCTC 1 cut(s) 561
EcoNI CCTNNNNNAGG 1 cut(s) 448
EcoRI GAATTC 2 cut(s) 131, 230
EcoT14I CCWWGG 2 cut(s) 90, 449
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 563
ErhI CCWWGG 2 cut(s) 90, 449
FaeI CATG 4 cut(s) 94, 271, 332, 628
FaiI YATR 8 cut(s) 92, 197, 264, 269, 330, 475, 626, 671
FaqI GGGAC 2 cut(s) 43, 505
FatI CATG 4 cut(s) 90, 267, 328, 624
FbaI TGATCA 2 cut(s) 208, 687
Fnu4HI GCNGC 3 cut(s) 326, 503, 576
FokI GGATG 1 cut(s) 616
FriOI GRGCYC 1 cut(s) 563
Fsp4HI GCNGC 3 cut(s) 326, 503, 576
FspBI CTAG 3 cut(s) 62, 84, 761
GluI GCNGC 3 cut(s) 326, 503, 576
HaeIII GGCC 2 cut(s) 454, 682
HapII CCGG 2 cut(s) 112, 227
Hin1I GRCGYC 1 cut(s) 548
Hin1II CATG 4 cut(s) 94, 271, 332, 628
HpaII CCGG 2 cut(s) 112, 227
HphI GGTGA 3 cut(s) 194, 409, 724
Hpy166II GTNNAC 2 cut(s) 400, 465
Hpy188III TCNNGA 3 cut(s) 84, 590, 748
Hpy8I GTNNAC 2 cut(s) 400, 465
Hpy99I CGWCG 3 cut(s) 143, 517, 550
HpyAV CCTTC 6 cut(s) 111, 290, 317, 386, 589, 750
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 2 cut(s) 220, 548
HpyCH4V TGCA 5 cut(s) 4, 278, 465, 575, 705
HpyF10VI GCNNNNNNNGC 5 cut(s) 325, 351, 499, 575, 581
HpyF3I CTNAG 5 cut(s) 333, 341, 350, 459, 746
HpySE526I ACGT 2 cut(s) 220, 548
Hsp92I GRCGYC 1 cut(s) 548
Hsp92II CATG 4 cut(s) 94, 271, 332, 628
Ksp22I TGATCA 2 cut(s) 208, 687
Kzo9I GATC 6 cut(s) 86, 190, 208, 586, 659, 687
LguI GCTCTTC 1 cut(s) 710
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 9 cut(s) 45, 59, 118, 125, 164, 240, 679, 695, 733
Lsp1109I GCAGC 3 cut(s) 337, 514, 587
LweI GCATC 1 cut(s) 562
MaeI CTAG 3 cut(s) 62, 84, 761
MaeII ACGT 2 cut(s) 220, 548
MaeIII GTNAC 1 cut(s) 221
MalI GATC 6 cut(s) 88, 192, 210, 588, 661, 689
MboI GATC 6 cut(s) 86, 190, 208, 586, 659, 687
MboII GAAGA 9 cut(s) 508, 519, 522, 525, 534, 543, 546, 640, 727
MflI RGATCY 2 cut(s) 86, 190
MhlI GDGCHC 3 cut(s) 467, 563, 722
MluCI AATT 4 cut(s) 66, 131, 230, 699
MmeI TCCRAC 1 cut(s) 627
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 69
MslI CAYNNNNRTG 3 cut(s) 180, 460, 710
MspI CCGG 2 cut(s) 112, 227
MspR9I CCNGG 2 cut(s) 112, 227
MwoI GCNNNNNNNGC 5 cut(s) 325, 351, 499, 575, 581
NciI CCSGG 2 cut(s) 112, 227
NcoI CCATGG 1 cut(s) 90
NdeII GATC 6 cut(s) 86, 190, 208, 586, 659, 687
NlaIII CATG 4 cut(s) 94, 271, 332, 628
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 332
OliI CACNNNNGTG 2 cut(s) 460, 710
PaeI GCATGC 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 710
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 554
PdmI GAANNNNTTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 327, 504, 577
Ppu21I YACGTR 1 cut(s) 221
PsiI TTATAA 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 563
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 2 cut(s) 86, 190
RsaI GTAC 2 cut(s) 219, 623
RsaNI GTAC 2 cut(s) 218, 622
RseI CAYNNNNRTG 3 cut(s) 180, 460, 710
SacI GAGCTC 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 710
SatI GCNGC 3 cut(s) 326, 503, 576
Sau3AI GATC 6 cut(s) 86, 190, 208, 586, 659, 687
ScrFI CCNGG 2 cut(s) 112, 227
SduI GDGCHC 3 cut(s) 467, 563, 722
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 3 cut(s) 180, 460, 710
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SnaBI TACGTA 1 cut(s) 221
SphI GCATGC 1 cut(s) 332
Sse9I AATT 4 cut(s) 66, 131, 230, 699
SspMI CTAG 3 cut(s) 62, 84, 761
SstI GAGCTC 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 110, 225
StyI CCWWGG 2 cut(s) 90, 449
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 2 cut(s) 223, 551
TaqI TCGA 4 cut(s) 138, 234, 545, 557
TasI AATT 4 cut(s) 66, 131, 230, 699
TatI WGTACW 1 cut(s) 621
TseI GCWGC 3 cut(s) 325, 502, 575
TspDTI ATGAA 2 cut(s) 142, 641
VneI GTGCAC 1 cut(s) 463
XagI CCTNNNNNAGG 1 cut(s) 448
XapI RAATTY 2 cut(s) 131, 230
XbaI TCTAGA 1 cut(s) 83
XceI RCATGY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 3 cut(s) 62, 84, 761
ZraI GACGTC 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.