RchiOBHm_Chr4g0416801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016049
Physical Location & Seq
Forward (+)
41961906 .. 41963269
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38690

Sequence Viewer

Length: 720 bp
ATGGTATCCCTGGAAGTTGTTCAGACAACCTCTAGATCCATCGAGCCATCCTCGAGTCCCCGGATTTCTTTCTCTACCGATTTCCTCGACGAAAATGACTTCATCACTATTAGCCCAAATCCTCACGGTGAACTTCAAGACAGGAAAATGGAGTGTGATCAGAAGGCAAGAAATGCAGACTTTGAGTTTCTCTCAAACAATGTGAGTAGTCATGCCATGTTAACTGCAGATGAGCTCTTCTTTGAAGGAAAGCTCCTTCCCTTTTGGCAAAAGCAGCATGCCGAAAGGCTCAACAAGATTCGTCTTAAAACAAAGGACGATGAGATAAGCGAGGAAGAGGAAGAGGTAGTGAACAAGGAGGAAAGTAGAGGAAACTGGTTTGTCGATGATGACCCATCTCCAAGGCCGCCGAAGTGCACTGTTTTATGGAAAGAGTTGCTCAGGTTGAAGAAGCAACGTGCTTCAACTCTCTCACCCTCCTCTTCATCCTCGTCTTCATCATCTTCAAACTCGTTTGCTGATGTAGCCACAGCAGATCAAGAGAAGGAGCCGATGGGAAACAAAGAGAAGTACATGAAGAGGATAAAGAAAGGCTTAGAGAGAACACGATCAGCCAGCATAAGAATAAGGCCAATGATTAATGTGCCGATTTGCACACAGATGAAGAACAGTGCGTTACCACCTTTGTTTCCTCTCAGAAAAGGAAGACTAGATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.32

Weight (kDa)

7.69

Isoelectric Point (pI)

65.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05980
fragaria_vesca FvH4_4g15060
malus_domestica MD13G1188400.v1.1 MD16G1188800.v1.1
prunus_persica Prupe.1G155500_v2.0.a1
pyrus_communis pycom13g16270 pycom16g15880
rosa_chinensis RchiOBHm_Chr4g0416801
rosa_laevigata RLG00000007949
rosa_multiflora Rmu_co8456203.1_g000001 Rmu_sc0015663.1_g000002
rosa_roxburghii Rroxscaffold_5G00360680
rosa_rugosa Rorug04G0145000
rosa_samantha Rh4CG218500
rosa_wichuraiana Rw4G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 407
AclWI GGATC 1 cut(s) 30
AfaI GTAC 1 cut(s) 572
AgsI TTSAA 5 cut(s) 137, 245, 448, 465, 507
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 235, 253
AluI AGCT 2 cut(s) 235, 253
Alw21I GWGCWC 2 cut(s) 237, 419
Alw44I GTGCAC 1 cut(s) 415
AlwI GGATC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 2 cut(s) 404, 629
ApaLI GTGCAC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 274
AseI ATTAAT 1 cut(s) 639
Asp700I GAANNNNTTC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 140, 465
AvaI CYCGRG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 486, 712
Bbv12I GWGCWC 2 cut(s) 237, 419
BbvI GCAGC 1 cut(s) 286
BccI CCATC 4 cut(s) 47, 55, 403, 547
BciT130I CCWGG 1 cut(s) 11
BciVI GTATCC 1 cut(s) 16
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 61
BfaI CTAG 2 cut(s) 33, 710
BfmI CTRYAG 1 cut(s) 225
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 2 cut(s) 275, 407
BlsI GCNGC 2 cut(s) 276, 408
Bme1390I CCNGG 2 cut(s) 11, 61
BmeT110I CYCGRG 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 2 cut(s) 11, 61
BpiI GAAGAC 2 cut(s) 486, 712
BplI GAGNNNNNCTC 4 cut(s) 35, 67, 176, 208
Bpu10I CCTNAGC 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 3 cut(s) 9, 59, 401
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 3 cut(s) 9, 59, 401
BseGI GGATG 2 cut(s) 47, 485
BseMII CTCAG 2 cut(s) 454, 709
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 2 cut(s) 406, 631
BsiHKAI GWGCWC 2 cut(s) 237, 419
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 2 cut(s) 406, 631
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 2 cut(s) 237, 419
Bsp143I GATC 4 cut(s) 35, 157, 535, 608
BspACI CCGC 1 cut(s) 407
BspANI GGCC 2 cut(s) 406, 631
BspCNI CTCAG 2 cut(s) 453, 708
BspLI GGNNCC 1 cut(s) 549
BspMAI CTGCAG 1 cut(s) 229
BspPI GGATC 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 9, 59, 401
BssMI GATC 4 cut(s) 35, 157, 535, 608
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 3 cut(s) 128, 421, 671
Bst6I CTCTTC 5 cut(s) 242, 330, 336, 487, 572
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 279, 616
BstDEI CTNAG 3 cut(s) 440, 595, 695
BstF5I GGATG 2 cut(s) 47, 485
BstKTI GATC 4 cut(s) 38, 160, 538, 611
BstMBI GATC 4 cut(s) 35, 157, 535, 608
BstMWI GCNNNNNNNGC 3 cut(s) 173, 274, 524
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 9, 59
BstSFI CTRYAG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 2 cut(s) 486, 712
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 406, 631
BtsCI GGATG 2 cut(s) 47, 485
BtsIMutI CAGTG 2 cut(s) 417, 676
Cac8I GCNNGC 2 cut(s) 279, 616
Csp6I GTAC 1 cut(s) 571
CviAII CATG 4 cut(s) 212, 217, 278, 574
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 3 cut(s) 440, 595, 695
DpnI GATC 4 cut(s) 37, 159, 537, 610
DpnII GATC 4 cut(s) 35, 157, 535, 608
Eam1104I CTCTTC 5 cut(s) 242, 330, 336, 487, 572
EarI CTCTTC 5 cut(s) 242, 330, 336, 487, 572
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 4 cut(s) 215, 220, 281, 577
FaiI YATR 6 cut(s) 213, 218, 279, 427, 575, 620
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FaqI GGGAC 1 cut(s) 42
FatI CATG 4 cut(s) 211, 216, 277, 573
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 275, 407
FokI GGATG 2 cut(s) 34, 472
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 275, 407
FspBI CTAG 2 cut(s) 33, 710
GluI GCNGC 2 cut(s) 275, 407
HaeIII GGCC 2 cut(s) 406, 631
HapII CCGG 1 cut(s) 61
Hin1II CATG 4 cut(s) 215, 220, 281, 577
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 2 cut(s) 55, 298
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 1 cut(s) 61
HphI GGTGA 2 cut(s) 140, 465
Hpy166II GTNNAC 4 cut(s) 131, 222, 352, 417
Hpy188I TCNGA 3 cut(s) 24, 162, 698
Hpy188III TCNNGA 3 cut(s) 33, 137, 539
Hpy8I GTNNAC 4 cut(s) 131, 222, 352, 417
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 4 cut(s) 157, 239, 266, 538
HpyCH4III ACNGT 3 cut(s) 128, 421, 671
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 4 cut(s) 176, 227, 417, 654
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 274, 524
HpyF3I CTNAG 3 cut(s) 440, 595, 695
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 4 cut(s) 215, 220, 281, 577
Ksp22I TGATCA 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 4 cut(s) 35, 157, 535, 608
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 2 cut(s) 258, 547
LpnPI CCDG 6 cut(s) 23, 74, 127, 361, 427, 628
Lsp1109I GCAGC 1 cut(s) 286
MaeI CTAG 2 cut(s) 33, 710
MaeII ACGT 1 cut(s) 457
MaeIII GTNAC 1 cut(s) 675
MalI GATC 4 cut(s) 37, 159, 537, 610
MboI GATC 4 cut(s) 35, 157, 535, 608
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 237, 419
MlyI GAGTC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 3 cut(s) 221, 306, 639
MslI CAYNNNNRTG 1 cut(s) 659
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 2 cut(s) 11, 61
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 173, 274, 524
NciI CCSGG 1 cut(s) 61
NdeII GATC 4 cut(s) 35, 157, 535, 608
NlaIII CATG 4 cut(s) 215, 220, 281, 577
NlaIV GGNNCC 1 cut(s) 549
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 2 cut(s) 276, 408
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PshBI ATTAAT 1 cut(s) 639
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 549
PspXI VCTCGAGB 1 cut(s) 52
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 659
SacI GAGCTC 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 3 cut(s) 221, 306, 639
SatI GCNGC 2 cut(s) 275, 407
Sau3AI GATC 4 cut(s) 35, 157, 535, 608
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 11, 61
SduI GDGCHC 2 cut(s) 237, 419
SetI ASST 8 cut(s) 32, 237, 255, 348, 446, 460, 685, 719
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SphI GCATGC 1 cut(s) 281
SsiI CCGC 1 cut(s) 407
SspMI CTAG 2 cut(s) 33, 710
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 9, 59
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 3 cut(s) 128, 421, 671
TaiI ACGT 1 cut(s) 460
TaqI TCGA 4 cut(s) 42, 53, 87, 384
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 3 cut(s) 221, 306, 639
Tru9I TTAA 3 cut(s) 221, 306, 639
TscAI CASTG 2 cut(s) 424, 676
TseI GCWGC 1 cut(s) 274
TspDTI ATGAA 5 cut(s) 91, 474, 486, 590, 677
TspRI CASTG 2 cut(s) 424, 676
VneI GTGCAC 1 cut(s) 415
VspI ATTAAT 1 cut(s) 639
XbaI TCTAGA 1 cut(s) 32
XceI RCATGY 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 2 cut(s) 33, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.