Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009885

Physical Location & Seq

Genomic Coordinates Forward (+)

1801446 .. 1802081

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTGGACACTAGCTTAACCAATGAGGATACTATAGAGGAGACTGCATTCGAGACTTGTACTCATATAAAAGTTGGAGTTTCTATGAGCAAACCATTTTCAAGCTTCAGTTTCTTGACTGTAATTAATCTAAGTTATACAAATCTAGAGAATGGAGGTGCTATAGCTTTAGTAAACGCTCTCAAGAACTCCGCTCCATCTCTTCAAGTTATAGAAATGGCTGGAAATAACATAACTTATGAGGCGGCTACAGCTATCGCAGTTTGTTTGGCAGCAAAGAGACATCTGAAAAAGTTGAATTTGTCTGAAAATGATCTAAAAGATGAGGGATGTGTTGAGATTGTAAAGAGTATGGAAGATTGGGAGTTAGAATATGTTGATATGAGCTACAATGACTTGAGAAGAGAAGGAGCATTGCGCTTGGCTCGTGTTGTTGTCAAGAAAGGAAGTTTCAAGATGTTGAACATTGATGGAAATATGATCTCTCTTAAAGGCATTGAGGAAATCAAAGTGATATTCACGAATTGTCCAAAGTTACTTGGACCTTTGGATAAGAACGTATATAATGTGGATGATGATGATGATTTAAGAGAGAATGATGAAGATGAATTTGTGAGTGTATTTATCTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006970 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0098588 GO:0098805 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03010 ko03013 map03010 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

211

Amino Acids

23.57

Weight (kDa)

4.57

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06000 AT5G19320 AT5G19320
fragaria_vesca	FvH4_4g14980 FvH4_4g14980
malus_domestica	MD13G1187000.v1.1 MD16G1187900.v1.1
prunus_persica	Prupe.1G154700_v2.0.a1 Prupe.1G154700_v2.0.a1
pyrus_communis	pycom13g16200 pycom16g15790
rosa_chinensis	RchiOBHm_Chr4g0416981
rosa_laevigata	RLG00000007933
rosa_multiflora	Rmu_ssc0000010.1_g000017
rosa_roxburghii	Rroxscaffold_5G00360860
rosa_rugosa	Rorug04G0145800
rosa_samantha	Rh4AG208300 Rh4BG205500 Rh4CG219200 Rh4DG205900
rosa_wichuraiana	Rw4G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	2 cut(s)	192, 245
AcsI	RAATTY	2 cut(s)	298, 608
AcuI	CTGAAG	1 cut(s)	91
AfaI	GTAC	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	102, 206, 298, 454, 463
AluBI	AGCT	5 cut(s)	15, 105, 167, 254, 387
AluI	AGCT	5 cut(s)	15, 105, 167, 254, 387
Alw26I	GTCTC	3 cut(s)	35, 47, 274
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	2 cut(s)	298, 608
AseI	ATTAAT	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	542
BauI	CACGAG	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	2 cut(s)	205, 464
BciVI	GTATCC	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	35, 47, 274
BfaI	CTAG	2 cut(s)	12, 146
BfmI	CTRYAG	3 cut(s)	33, 162, 249
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	246, 273
BlsI	GCNGC	2 cut(s)	247, 274
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	167, 418
Bse3DI	GCAATG	1 cut(s)	413
BseGI	GGATG	2 cut(s)	335, 577
BseMI	GCAATG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	284
BsmAI	GTCTC	3 cut(s)	35, 47, 274
BsmI	GAATGC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	313, 480
BspACI	CCGC	2 cut(s)	192, 245
BsrBI	CCGCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	413
BssMI	GATC	2 cut(s)	313, 480
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	207, 397
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	335, 577
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	2 cut(s)	316, 483
BstMAI	GTCTC	3 cut(s)	35, 47, 274
BstMBI	GATC	2 cut(s)	313, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSFI	CTRYAG	3 cut(s)	33, 162, 249
BstV1I	GCAGC	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	335, 577
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	60
CviJI	RGCY	8 cut(s)	15, 105, 167, 221, 248, 254, 387, 425
CviKI_1	RGCY	8 cut(s)	15, 105, 167, 221, 248, 254, 387, 425
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	315, 482
DpnII	GATC	2 cut(s)	313, 480
Eam1104I	CTCTTC	2 cut(s)	207, 397
EarI	CTCTTC	2 cut(s)	207, 397
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	246, 273
FokI	GGATG	2 cut(s)	342, 584
Fsp4HI	GCNGC	2 cut(s)	246, 273
FspBI	CTAG	2 cut(s)	12, 146
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	2 cut(s)	246, 273
HhaI	GCGC	1 cut(s)	420
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	7, 175
Hpy188I	TCNGA	2 cut(s)	288, 307
Hpy188III	TCNNGA	7 cut(s)	52, 115, 146, 184, 439, 454, 520
Hpy8I	GTNNAC	2 cut(s)	7, 175
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	558
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	313, 480
LmnI	GCTCC	2 cut(s)	199, 410
LpnPI	CCDG	1 cut(s)	207
Lsp1109I	GCAGC	1 cut(s)	284
MaeI	CTAG	2 cut(s)	12, 146
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	2 cut(s)	315, 482
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	2 cut(s)	313, 480
MboII	GAAGA	4 cut(s)	194, 368, 414, 614
MluCI	AATT	4 cut(s)	123, 298, 523, 608
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	19, 31, 149, 235, 319, 493
MseI	TTAA	4 cut(s)	17, 126, 489, 587
Mva1269I	GAATGC	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	2 cut(s)	313, 480
PctI	GAATGC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	247, 274
PshBI	ATTAAT	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	542
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	17, 126, 489, 587
SatI	GCNGC	2 cut(s)	246, 273
Sau3AI	GATC	2 cut(s)	313, 480
Sau96I	GGNCC	1 cut(s)	542
SetI	ASST	8 cut(s)	17, 107, 160, 169, 256, 389, 547, 561
SfcI	CTRYAG	3 cut(s)	33, 162, 249
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	182, 397
SmoI	CTYRAG	2 cut(s)	182, 397
Sse9I	AATT	4 cut(s)	123, 298, 523, 608
SsiI	CCGC	2 cut(s)	192, 245
SspMI	CTAG	2 cut(s)	12, 146
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	123, 298, 523, 608
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	4 cut(s)	17, 126, 489, 587
Tru9I	TTAA	4 cut(s)	17, 126, 489, 587
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	615, 621
VpaK11BI	GGWCC	1 cut(s)	542
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	2 cut(s)	298, 608
XbaI	TCTAGA	1 cut(s)	145
XspI	CTAG	2 cut(s)	12, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.