RchiOBHm_Chr4g0416981

RAN GTPase-activating protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
42172332 .. 42175843
3512 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38707

Sequence Viewer

Length: 1863 bp
ATGTTCAAAATATTTGGGGGAAATATTCCCATACGCTTGGATAGTATAGCCGTATGGCGTACGGTTGGGGATGCCCTAAAGTGGCGGCCTTTAAATCTCAACAGACCTAAACGCAGCACTCCCCTTCTTCGCTTTCACACTTTGATTTTTCCCTCCCCCTCTTTTCCCCCCCCTCTACATTCTCTTCCTTCCTCTGCTTCATTATTCTCTGTAACAGCTGCGAGCGAAAACAAAGGTCTTGTTGCAATGGACACCACATCTCTGAATGCGAAACGCCGGCCATTTTCACTTAAACTATGGCCTCCTAGCCAAAATACTAGGCAAGTGCTTGTGGAGCGGATGATAAACAATCTTAGCACTAAATCCATTTTCACTGAAAAGTATGGCACTCTGAGTAAGGAGGAGGCTGAGGAAAATGCAAAACAAATTGAGGATGTGGCTTTTGTTGCTGCAGACCAGAAGTATGAAAAGGAACCAGATGGCGATGGAGGTTCTGCTGTGCAGTTGTATGCTCGGGAATGTAGTAAGCTGCTGTTGGAAGTTCTGAAAAAGGGATCAAGTAGCAAGGAGAGTAAAGTGGCATCTGACACTACACCTAAAGAAACTTTGTTTGATATATCTAAAGGCACACGGGCATTTATTGAAGCTGAGGAAGCAGAGGAACTTTTAAGGCCATTGAGGGAGCCGGGGAATGCCTACACTAAAATATGCTTCAGCAATAGAAGCTTTGGTTTAGGAGCCGCCCGTGTTGCTGAGCCCATTCTGGTTTCCCTCAAGAATCAGTTGAAAGAAGTTGACTTATCAGATTTTATAGCAGGTAGACCTGAGGCAGAAGCTCTTGAAGTCATCAGTATATTTGCAGCTGCCTTGGAAGGTAGTGCATTGAGATTTTTGGATCTCTCAAACAATGCCTTGGGCGAGAAGGGTGTTAGGGCATTTGGAGCACTCCTGAAATCACAAAGTTGCTTGGAGGAACTCTATTTGATGAATGATGGCATTTCAGAAGAAGCTGCTCAAGCAGTTCACGAGTTGATTCCTTCTACAGAGAAGCTTAGAATCCTTCATTTTCATAACAACATGACAGGAAATGAGGGGGCATTTGCTATTTCTGAGGTTGTGAAGCATTCTCCCCTTCTGGAGGATTTCCGTTGTTCCTCTACCAGGGTAGAATCTGAGGGAGGAGTTGCGTTATGTGAGGCACTGGGGACTTGTACCCATTTAAAGAAGCTGGACTTGCGGGACAACATGTTTGGCGTAGAAGGTGGAATTGCATTGAGTAGAGCTCTTTCCAAGCATGAAAATTTGAAAGAGATTTACCTCAGTTACCTGAACCTTGAAGATGAGGGTGCAGTTGCACTGGCCAATGTTCTCAAGGAATCAGCTCCTTCACTTGAAGTCTTTGACATTGCTGGCAATGACATAACAGCTAAAGCTGCTTCTGCTCTAGCAGCTTGTATAGCAGCAAAGACACTTCTCACCAAGCTGAATTTGGGTGAGAATGAACTCAAGGATGAAGGCACTATTCAGATCAGCCAGGTGTTAGATGGTCTTTCCCAGTTAAGGGAAGTTGACTTGAACACCAACAAAATAAGAAGAGCTGGAGCCCGAGTGTTGGCGCAGGCTGTGGTTCGGAATCCTGATTTTAAGTTGCTGAACATCAATGGAAATTTCATATCTGATGAAGGCATACACGAGGTAATGGGTTTATTCAAGAAATCTCCTCACCTGCTTGGCCCTTTGGATGAGAATGACCCTGAAGGAGAGGATGATGATGCTGAAGACGATGAAGAATCTGGAGATGATGAAGTTAATGATGACGGGTTAGGATCAAAGCTGAAGAATCTCGAAGTTAACCAAGAGTAA

Protein Analysis

620

Amino Acids

67.7

Weight (kDa)

5.01

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WPP PF13943 96 - 191 2.8e-37 WPP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009885)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1734
Acc36I ACCTGC 2 cut(s) 806, 1734
AccBSI CCGCTC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 820
AciI CCGC 4 cut(s) 85, 337, 741, 1237
AclWI GGATC 3 cut(s) 562, 903, 1834
AcoI YGGCCR 2 cut(s) 278, 1359
AcsI RAATTY 3 cut(s) 1300, 1486, 1666
AcuI CTGAAG 4 cut(s) 697, 1776, 1797, 1856
AfaI GTAC 2 cut(s) 61, 1213
AfiI CCNNNNNNNGG 6 cut(s) 81, 1138, 1161, 1560, 1561, 1612
AflIII ACRYGT 1 cut(s) 1245
AgsI TTSAA 9 cut(s) 7, 644, 787, 842, 1306, 1337, 1394, 1576, 1711
AjnI CCWGG 2 cut(s) 1160, 1533
Alw21I GWGCWC 2 cut(s) 946, 1285
AlwI GGATC 3 cut(s) 562, 903, 1834
Ama87I CYCGRG 2 cut(s) 513, 1605
AoxI GGCC 6 cut(s) 86, 278, 299, 671, 1359, 1732
ApoI RAATTY 3 cut(s) 1300, 1486, 1666
ArsI GACNNNNNNTTYG 2 cut(s) 1232, 1264
AspLEI GCGC 1 cut(s) 1618
AspS9I GGNCC 1 cut(s) 1733
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 3 cut(s) 1468, 1505, 1715
AvaI CYCGRG 2 cut(s) 513, 1605
AxyI CCTNAGG 1 cut(s) 825
BalI TGGCCA 1 cut(s) 1361
BanII GRGCYC 3 cut(s) 759, 1285, 1606
BauI CACGAG 2 cut(s) 1025, 1691
BbsI GAAGAC 1 cut(s) 1785
Bbv12I GWGCWC 2 cut(s) 946, 1285
BbvCI CCTCAGC 2 cut(s) 408, 648
BccI CCATC 4 cut(s) 473, 479, 986, 1538
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 1162, 1535
BcnI CCSGG 1 cut(s) 687
BfaI CTAG 3 cut(s) 306, 318, 1445
BfmI CTRYAG 2 cut(s) 450, 1041
BfuAI ACCTGC 2 cut(s) 806, 1734
BlpI GCTNAGC 1 cut(s) 753
Bme1390I CCNGG 3 cut(s) 687, 1162, 1535
BmeT110I CYCGRG 2 cut(s) 513, 1605
BmgT120I GGNCC 1 cut(s) 1733
BmiI GGNNCC 4 cut(s) 474, 684, 739, 1603
BmrFI CCNGG 3 cut(s) 687, 1162, 1535
BmrI ACTGGG 2 cut(s) 1211, 1549
BmsI GCATC 3 cut(s) 61, 590, 1762
BmuI ACTGGG 2 cut(s) 1211, 1549
BpiI GAAGAC 1 cut(s) 1785
BplI GAGNNNNNCTC 2 cut(s) 1267, 1299
BpmI CTGGAG 3 cut(s) 1157, 1620, 1815
Bpu10I CCTNAGC 2 cut(s) 408, 648
Bpu1102I GCTNAGC 1 cut(s) 753
BpuEI CTTGAG 4 cut(s) 758, 999, 1355, 1490
BpuMI CCSGG 1 cut(s) 687
BsaJI CCNNGG 4 cut(s) 686, 867, 912, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 1593, 1623
Bsc4I CCNNNNNNNGG 6 cut(s) 81, 1138, 1161, 1560, 1561, 1612
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 3 cut(s) 1206, 1362, 1555
Bse21I CCTNAGG 1 cut(s) 825
Bse3DI GCAATG 3 cut(s) 252, 1404, 1420
BseBI CCWGG 2 cut(s) 1162, 1535
BseDI CCNNGG 4 cut(s) 686, 867, 912, 1161
BseGI GGATG 6 cut(s) 76, 345, 439, 1516, 1747, 1771
BseLI CCNNNNNNNGG 6 cut(s) 81, 1138, 1161, 1560, 1561, 1612
BseMI GCAATG 3 cut(s) 252, 1404, 1420
BseMII CTCAG 8 cut(s) 383, 399, 639, 744, 816, 1101, 1164, 1333
BseNI ACTGG 3 cut(s) 1206, 1362, 1555
BseRI GAGGAG 3 cut(s) 416, 1194, 1710
BsgI GTGCAG 2 cut(s) 521, 1368
BshFI GGCC 6 cut(s) 88, 280, 301, 673, 1361, 1734
BsiHKAI GWGCWC 2 cut(s) 946, 1285
BsiHKCI CYCGRG 2 cut(s) 513, 1605
BsiSI CCGG 2 cut(s) 277, 686
BsiWI CGTACG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 1219, 1253
BslI CCNNNNNNNGG 6 cut(s) 81, 1138, 1161, 1560, 1561, 1612
BsmFI GGGAC 2 cut(s) 1219, 1253
BsmI GAATGC 3 cut(s) 271, 697, 1123
BsnI GGCC 6 cut(s) 88, 280, 301, 673, 1361, 1734
BsoBI CYCGRG 2 cut(s) 513, 1605
Bsp1286I GDGCHC 4 cut(s) 759, 946, 1285, 1606
Bsp143I GATC 4 cut(s) 554, 895, 1527, 1826
Bsp1720I GCTNAGC 1 cut(s) 753
BspACI CCGC 4 cut(s) 85, 337, 741, 1237
BspANI GGCC 6 cut(s) 88, 280, 301, 673, 1361, 1734
BspCNI CTCAG 8 cut(s) 384, 400, 640, 745, 817, 1102, 1165, 1332
BspLI GGNNCC 4 cut(s) 474, 684, 739, 1603
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 2 cut(s) 806, 1734
BspPI GGATC 3 cut(s) 562, 903, 1834
BspQI GCTCTTC 1 cut(s) 1588
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 3 cut(s) 252, 1404, 1420
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 3 cut(s) 1206, 1362, 1555
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 4 cut(s) 686, 867, 912, 1161
BssMI GATC 4 cut(s) 554, 895, 1527, 1826
BssSI CACGAG 2 cut(s) 1025, 1691
BssT1I CCWWGG 2 cut(s) 867, 912
Bst2BI CACGAG 2 cut(s) 1025, 1691
Bst2UI CCWGG 2 cut(s) 1162, 1535
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 2 cut(s) 189, 1588
BstC8I GCNNGC 4 cut(s) 223, 278, 1411, 1620
BstENI CCTNNNNNAGG 2 cut(s) 1136, 1159
BstF5I GGATG 6 cut(s) 76, 345, 439, 1516, 1747, 1771
BstHHI GCGC 1 cut(s) 1618
BstKTI GATC 4 cut(s) 557, 898, 1530, 1829
BstMBI GATC 4 cut(s) 554, 895, 1527, 1826
BstNI CCWGG 2 cut(s) 1162, 1535
BstNSI RCATGY 1 cut(s) 1249
BstSCI CCNGG 3 cut(s) 685, 1160, 1533
BstSFI CTRYAG 2 cut(s) 450, 1041
BstV2I GAAGAC 1 cut(s) 1785
BstX2I RGATCY 1 cut(s) 895
BstXI CCANNNNNNTGG 1 cut(s) 37
BstYI RGATCY 1 cut(s) 895
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 6 cut(s) 88, 280, 301, 673, 1361, 1734
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 6 cut(s) 76, 345, 439, 1516, 1747, 1771
BtsIMutI CAGTG 3 cut(s) 372, 1199, 1355
BveI ACCTGC 2 cut(s) 806, 1734
Cac8I GCNNGC 4 cut(s) 223, 278, 1411, 1620
CfoI GCGC 1 cut(s) 1618
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 1733
Csp6I GTAC 2 cut(s) 60, 1212
CviAII CATG 3 cut(s) 1078, 1246, 1295
CviQI GTAC 2 cut(s) 60, 1212
DpnI GATC 4 cut(s) 556, 897, 1529, 1828
DpnII GATC 4 cut(s) 554, 895, 1527, 1826
DraI TTTAAA 2 cut(s) 93, 1221
EaeI YGGCCR 2 cut(s) 278, 1359
Eam1104I CTCTTC 2 cut(s) 189, 1588
EarI CTCTTC 2 cut(s) 189, 1588
Ecl136II GAGCTC 1 cut(s) 1283
Eco130I CCWWGG 2 cut(s) 867, 912
Eco24I GRGCYC 3 cut(s) 759, 1285, 1606
Eco53kI GAGCTC 1 cut(s) 1283
Eco57I CTGAAG 4 cut(s) 697, 1776, 1797, 1856
Eco81I CCTNAGG 1 cut(s) 825
Eco88I CYCGRG 2 cut(s) 513, 1605
EcoICRI GAGCTC 1 cut(s) 1283
EcoNI CCTNNNNNAGG 2 cut(s) 1136, 1159
EcoRII CCWGG 2 cut(s) 1160, 1533
EcoT14I CCWWGG 2 cut(s) 867, 912
EcoT38I GRGCYC 3 cut(s) 759, 1285, 1606
ErhI CCWWGG 2 cut(s) 867, 912
FaeI CATG 3 cut(s) 1081, 1249, 1298
FalI AAGNNNNNCTT 2 cut(s) 1217, 1249
FaqI GGGAC 2 cut(s) 1219, 1253
FatI CATG 3 cut(s) 1077, 1245, 1294
FauI CCCGC 1 cut(s) 1230
FblI GTMKAC 1 cut(s) 820
FokI GGATG 6 cut(s) 83, 352, 446, 1523, 1754, 1778
FriOI GRGCYC 3 cut(s) 759, 1285, 1606
FspBI CTAG 3 cut(s) 306, 318, 1445
GlaI GCGC 1 cut(s) 1617
GsuI CTGGAG 3 cut(s) 1157, 1620, 1815
HaeIII GGCC 6 cut(s) 88, 280, 301, 673, 1361, 1734
HapII CCGG 2 cut(s) 277, 686
HhaI GCGC 1 cut(s) 1618
Hin1II CATG 3 cut(s) 1081, 1249, 1298
Hin6I GCGC 1 cut(s) 1616
HinP1I GCGC 1 cut(s) 1616
HincII GTYRAC 3 cut(s) 796, 1570, 1852
HindII GTYRAC 3 cut(s) 796, 1570, 1852
HindIII AAGCTT 2 cut(s) 724, 1049
HinfI GANTC 8 cut(s) 778, 1033, 1056, 1169, 1376, 1633, 1790, 1840
HpaI GTTAAC 1 cut(s) 1852
HpaII CCGG 2 cut(s) 277, 686
HphI GGTGA 3 cut(s) 1468, 1505, 1715
Hpy166II GTNNAC 5 cut(s) 796, 821, 1024, 1570, 1852
Hpy8I GTNNAC 5 cut(s) 796, 821, 1024, 1570, 1852
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 9 cut(s) 245, 419, 452, 502, 860, 881, 1271, 1349, 1355
Hsp92II CATG 3 cut(s) 1081, 1249, 1298
HspAI GCGC 1 cut(s) 1616
KroI GCCGGC 1 cut(s) 276
KroNI GCCGGC 1 cut(s) 278
KspAI GTTAAC 1 cut(s) 1852
Kzo9I GATC 4 cut(s) 554, 895, 1527, 1826
LguI GCTCTTC 1 cut(s) 1588
LmnI GCTCC 6 cut(s) 334, 682, 737, 941, 1387, 1601
LweI GCATC 3 cut(s) 61, 590, 1762
MaeI CTAG 3 cut(s) 306, 318, 1445
MaeIII GTNAC 2 cut(s) 211, 1322
MalI GATC 4 cut(s) 556, 897, 1529, 1828
MbiI CCGCTC 1 cut(s) 337
MboI GATC 4 cut(s) 554, 895, 1527, 1826
MboII GAAGA 8 cut(s) 119, 176, 1016, 1349, 1605, 1790, 1799, 1849
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 4 cut(s) 759, 946, 1285, 1606
MlsI TGGCCA 1 cut(s) 1361
MluCI AATT 5 cut(s) 426, 1266, 1300, 1486, 1666
MluNI TGGCCA 1 cut(s) 1361
MmeI TCCRAC 1 cut(s) 516
Mox20I TGGCCA 1 cut(s) 1361
MroNI GCCGGC 1 cut(s) 276
MscI TGGCCA 1 cut(s) 1361
MseI TTAA 8 cut(s) 92, 291, 668, 1220, 1559, 1644, 1809, 1851
Msp20I TGGCCA 1 cut(s) 1361
MspA1I CMGCKG 2 cut(s) 218, 863
MspI CCGG 2 cut(s) 277, 686
MspR9I CCNGG 3 cut(s) 687, 1162, 1535
Mva1269I GAATGC 3 cut(s) 271, 697, 1123
MvaI CCWGG 2 cut(s) 1162, 1535
NaeI GCCGGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 687
NdeII GATC 4 cut(s) 554, 895, 1527, 1826
NgoMIV GCCGGC 1 cut(s) 276
NlaIII CATG 3 cut(s) 1081, 1249, 1298
NlaIV GGNNCC 4 cut(s) 474, 684, 739, 1603
NspI RCATGY 1 cut(s) 1249
PaqCI CACCTGC 1 cut(s) 1734
PciI ACATGT 1 cut(s) 1245
PciSI GCTCTTC 1 cut(s) 1588
PctI GAATGC 3 cut(s) 271, 697, 1123
PdiI GCCGGC 1 cut(s) 278
PfeI GAWTC 8 cut(s) 778, 1033, 1056, 1169, 1376, 1633, 1790, 1840
Pfl23II CGTACG 1 cut(s) 59
PscI ACATGT 1 cut(s) 1245
Psp124BI GAGCTC 1 cut(s) 1285
Psp6I CCWGG 2 cut(s) 1160, 1533
PspGI CCWGG 2 cut(s) 1160, 1533
PspLI CGTACG 1 cut(s) 59
PspN4I GGNNCC 4 cut(s) 474, 684, 739, 1603
PspPI GGNCC 1 cut(s) 1733
PstI CTGCAG 1 cut(s) 454
PsuI RGATCY 1 cut(s) 895
PvuII CAGCTG 2 cut(s) 218, 863
RsaI GTAC 2 cut(s) 61, 1213
RsaNI GTAC 2 cut(s) 60, 1212
SacI GAGCTC 1 cut(s) 1285
SapI GCTCTTC 1 cut(s) 1588
SaqAI TTAA 8 cut(s) 92, 291, 668, 1220, 1559, 1644, 1809, 1851
Sau3AI GATC 4 cut(s) 554, 895, 1527, 1826
Sau96I GGNCC 1 cut(s) 1733
ScrFI CCNGG 3 cut(s) 687, 1162, 1535
SduI GDGCHC 4 cut(s) 759, 946, 1285, 1606
SfaNI GCATC 3 cut(s) 61, 590, 1762
SfcI CTRYAG 2 cut(s) 450, 1041
SmlI CTYRAG 4 cut(s) 773, 1014, 1370, 1505
SmoI CTYRAG 4 cut(s) 773, 1014, 1370, 1505
Sse9I AATT 5 cut(s) 426, 1266, 1300, 1486, 1666
SsiI CCGC 4 cut(s) 85, 337, 741, 1237
SspI AATATT 2 cut(s) 12, 25
SspMI CTAG 3 cut(s) 306, 318, 1445
SstI GAGCTC 1 cut(s) 1285
StyD4I CCNGG 3 cut(s) 685, 1160, 1533
StyI CCWWGG 2 cut(s) 867, 912
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 1845
TasI AATT 5 cut(s) 426, 1266, 1300, 1486, 1666
TauI GCSGC 2 cut(s) 88, 743
TfiI GAWTC 8 cut(s) 778, 1033, 1056, 1169, 1376, 1633, 1790, 1840
Tru1I TTAA 8 cut(s) 92, 291, 668, 1220, 1559, 1644, 1809, 1851
Tru9I TTAA 8 cut(s) 92, 291, 668, 1220, 1559, 1644, 1809, 1851
TscAI CASTG 3 cut(s) 379, 1206, 1362
TspGWI ACGGA 1 cut(s) 1136
TspRI CASTG 3 cut(s) 379, 1206, 1362
XagI CCTNNNNNAGG 2 cut(s) 1136, 1159
XapI RAATTY 3 cut(s) 1300, 1486, 1666
XceI RCATGY 1 cut(s) 1249
XcmI CCANNNNNNNNNTGG 2 cut(s) 1486, 1541
XmiI GTMKAC 1 cut(s) 820
XspI CTAG 3 cut(s) 306, 318, 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.