Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000010.1

Orthogroup ID

OG0009885

Physical Location & Seq

Genomic Coordinates Forward (+)

70310 .. 74275

Gene Structure 3966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000010.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

atgcaaaacgtcctttgtgtcgaaactggagtaagcttcagcgatgcaagtagttttgtcttgatagctgggagcgaaaacaaaggtcttgttgcaatggacaccacatctctgaatgctaaacgccggccattttcacttaaactatggcctcctagccaaaatactaggcaagtgcttgtggagcggatgataaacaatcttagcactaaatccattttcactgaaaagtatggcactctgagtaaggaggaggctgaggaaaatgcaaaacaaattgaggatgtggcttttgttgctgcagaccagaagtatgaaaaggaaccagatggcgatggaggttctgcggtgcagttgtatgctcgggaatgtagtaagctgctgttggaagttcttaaaaagggatctagtagcaaggagagtaaagtggcatctgacactacacgtaaagaaactttgtttgatatatctaaaggcacacgggcatttattgaagctgaggaagcagaggaacttttaaggccattgagggagccggggaatgcctacactaaaatatgcttcagcaatagaagctttggtttaggagccgcccgtgttgctgagcccattctggtttccctcaagaatcagttgaaagaagttgacttatcagattttatagcaggtagacctgaggcagaagctcttgaagtcatcagtatatttgcagctgccttggaaggtagtgcattgagatttttggatctctcaaacaatgccttgggcgagaaaggtgttagggcatttggagcactcctgaaatcacaaagttgcttggaggaactctatttgatgaatgatggcatttcagaagaagctgctcaagcagttcacgagttgattccttctacagagaagcttagaatccttcattttcataacaacatgacaggaaatgagggggcatttgctatttctgaggttgtgaagcattctccccttctggaggatttccgttgttcctctacgagggtagaatctgagggaggagttgcgttatgtgaggcactggggacttgtacccatttaaagaagctggacttgcgggacaacatgtttggcgtagaaggtggaattgcattgagtagagctctttccaagcatgaaaatttgaaagagatttacctcagttacctgaaccttgaagatgagggagcagttgcactagccaatgttctcaaggaatcagctccttcacttgaagtctttgacattgctggcaatgacataacagctgaagctgcttctgctctagcagcttgtatagcagcaaagacacttctcaccaagctgaatttgggtatttatcaagtggaggccattagttttgaacaggttttttctcctgctcaagtggaggcgctcgctggtcgagtagcttgcaggctggttcttgaccagggtttgggtccagttcgtctagagtcagactccttattgttagtacaagctatgcattctatccaagattcttctattcagctgcgggttgtttatgaggatgttttggctctcttttctgagctgcctggaagtattttctcacacttgtatcgagaagggaatactgctgctcattctcttgctcgttgggcgtcatgtaataggccttgcaatgttgtttttacttctacacctccctttatagagggcattatttctagagaatgtacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005819 GO:0005856 GO:0006810 GO:0006913 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009524 GO:0009536 GO:0009628 GO:0009651 GO:0012505 GO:0015630 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

572

Amino Acids

62.15

Weight (kDa)

5.03

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06000 AT5G19320 AT5G19320
fragaria_vesca	FvH4_4g14980 FvH4_4g14980
malus_domestica	MD13G1187000.v1.1 MD16G1187900.v1.1
prunus_persica	Prupe.1G154700_v2.0.a1 Prupe.1G154700_v2.0.a1
pyrus_communis	pycom13g16200 pycom16g15790
rosa_chinensis	RchiOBHm_Chr4g0416981
rosa_laevigata	RLG00000007933
rosa_multiflora	Rmu_ssc0000010.1_g000017
rosa_roxburghii	Rroxscaffold_5G00360860
rosa_rugosa	Rorug04G0145800
rosa_samantha	Rh4AG208300 Rh4BG205500 Rh4CG219200 Rh4DG205900
rosa_wichuraiana	Rw4G017660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	656
AccB7I	CCANNNNNTGG	1 cut(s)	1447
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	670
AciI	CCGC	5 cut(s)	187, 347, 591, 1087, 1528
AclWI	GGATC	2 cut(s)	412, 753
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	1150, 1336
AcuI	CTGAAG	3 cut(s)	22, 547, 1299
AcyI	GRCGYC	1 cut(s)	1637
AfaI	GTAC	3 cut(s)	1063, 1488, 1714
AfiI	CCNNNNNNNGG	3 cut(s)	988, 1011, 1447
AflIII	ACRYGT	2 cut(s)	443, 1095
AgsI	TTSAA	7 cut(s)	494, 637, 692, 1156, 1187, 1244, 1373
AjnI	CCWGG	2 cut(s)	1440, 1570
Alw21I	GWGCWC	2 cut(s)	796, 1135
AlwI	GGATC	2 cut(s)	412, 753
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	5 cut(s)	128, 149, 521, 1359, 1649
ApoI	RAATTY	2 cut(s)	1150, 1336
ArsI	GACNNNNNNTTYG	2 cut(s)	1082, 1114
AspLEI	GCGC	1 cut(s)	1405
AspS9I	GGNCC	1 cut(s)	1451
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	1318
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	1451
AxyI	CCTNAGG	1 cut(s)	675
BaeI	ACNNNNGTAYC	2 cut(s)	1577, 1610
BanII	GRGCYC	2 cut(s)	609, 1135
BauI	CACGAG	1 cut(s)	875
Bbv12I	GWGCWC	2 cut(s)	796, 1135
BbvCI	CCTCAGC	2 cut(s)	258, 498
BccI	CCATC	3 cut(s)	323, 329, 836
BcgI	CGANNNNNNTGC	2 cut(s)	1404, 1438
BciT130I	CCWGG	2 cut(s)	1442, 1572
BcnI	CCSGG	1 cut(s)	537
BfaI	CTAG	7 cut(s)	156, 168, 408, 1208, 1295, 1463, 1704
BfmI	CTRYAG	2 cut(s)	300, 891
BfoI	RGCGCY	1 cut(s)	1406
BfuAI	ACCTGC	1 cut(s)	656
BlpI	GCTNAGC	1 cut(s)	603
Bme1390I	CCNGG	3 cut(s)	537, 1442, 1572
Bme18I	GGWCC	1 cut(s)	1451
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	1451
BmiI	GGNNCC	4 cut(s)	324, 534, 589, 1452
BmrFI	CCNGG	3 cut(s)	537, 1442, 1572
BmrI	ACTGGG	1 cut(s)	1061
BmsI	GCATC	2 cut(s)	34, 440
BmuI	ACTGGG	1 cut(s)	1061
BplI	GAGNNNNNCTC	4 cut(s)	1117, 1149, 1457, 1489
BpmI	CTGGAG	2 cut(s)	48, 1007
Bpu10I	CCTNAGC	2 cut(s)	258, 498
Bpu1102I	GCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	4 cut(s)	608, 849, 1205, 1377
BpuMI	CCSGG	1 cut(s)	537
BsaAI	YACGTR	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	1637
BsaJI	CCNNGG	4 cut(s)	536, 717, 762, 1441
Bsc4I	CCNNNNNNNGG	3 cut(s)	988, 1011, 1447
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	3 cut(s)	31, 1056, 1454
Bse21I	CCTNAGG	1 cut(s)	675
Bse3DI	GCAATG	4 cut(s)	102, 1254, 1270, 1663
BseBI	CCWGG	2 cut(s)	1442, 1572
BseDI	CCNNGG	4 cut(s)	536, 717, 762, 1441
BseGI	GGATG	3 cut(s)	195, 289, 1549
BseLI	CCNNNNNNNGG	3 cut(s)	988, 1011, 1447
BseMI	GCAATG	4 cut(s)	102, 1254, 1270, 1663
BseMII	CTCAG	9 cut(s)	233, 249, 489, 594, 666, 951, 1014, 1183, 1554
BseNI	ACTGG	3 cut(s)	31, 1056, 1454
BseRI	GAGGAG	2 cut(s)	266, 1044
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	371
BshFI	GGCC	5 cut(s)	130, 151, 523, 1361, 1651
BsiHKAI	GWGCWC	2 cut(s)	796, 1135
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	127, 536
BslFI	GGGAC	2 cut(s)	1069, 1103
BslI	CCNNNNNNNGG	3 cut(s)	988, 1011, 1447
BsmFI	GGGAC	2 cut(s)	1069, 1103
BsmI	GAATGC	4 cut(s)	121, 547, 973, 1498
BsnI	GGCC	5 cut(s)	130, 151, 523, 1361, 1651
BsoBI	CYCGRG	1 cut(s)	363
Bsp1286I	GDGCHC	3 cut(s)	609, 796, 1135
Bsp143I	GATC	2 cut(s)	404, 745
Bsp1720I	GCTNAGC	1 cut(s)	603
BspACI	CCGC	5 cut(s)	187, 347, 591, 1087, 1528
BspANI	GGCC	5 cut(s)	130, 151, 523, 1361, 1651
BspCNI	CTCAG	9 cut(s)	234, 250, 490, 595, 667, 952, 1015, 1182, 1555
BspLI	GGNNCC	4 cut(s)	324, 534, 589, 1452
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	2 cut(s)	412, 753
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	4 cut(s)	102, 1254, 1270, 1663
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	3 cut(s)	31, 1056, 1454
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	4 cut(s)	536, 717, 762, 1441
BssMI	GATC	2 cut(s)	404, 745
BssNI	GRCGYC	1 cut(s)	1637
BssSI	CACGAG	1 cut(s)	875
BssT1I	CCWWGG	2 cut(s)	717, 762
Bst2BI	CACGAG	1 cut(s)	875
Bst2UI	CCWGG	2 cut(s)	1442, 1572
BstACI	GRCGYC	1 cut(s)	1637
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	5 cut(s)	128, 1261, 1407, 1423, 1427
BstENI	CCTNNNNNAGG	2 cut(s)	986, 1009
BstF5I	GGATG	3 cut(s)	195, 289, 1549
BstH2I	RGCGCY	1 cut(s)	1406
BstHHI	GCGC	1 cut(s)	1405
BstKTI	GATC	2 cut(s)	407, 748
BstMBI	GATC	2 cut(s)	404, 745
BstNI	CCWGG	2 cut(s)	1442, 1572
BstNSI	RCATGY	1 cut(s)	1099
BstSCI	CCNGG	3 cut(s)	535, 1440, 1570
BstSFI	CTRYAG	2 cut(s)	300, 891
BstX2I	RGATCY	2 cut(s)	404, 745
BstYI	RGATCY	2 cut(s)	404, 745
Bsu36I	CCTNAGG	1 cut(s)	675
BsuRI	GGCC	5 cut(s)	130, 151, 523, 1361, 1651
BtgZI	GCGATG	2 cut(s)	57, 348
BtsCI	GGATG	3 cut(s)	195, 289, 1549
BtsIMutI	CAGTG	2 cut(s)	222, 1049
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	5 cut(s)	128, 1261, 1407, 1423, 1427
CfoI	GCGC	1 cut(s)	1405
Cfr10I	RCCGGY	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	1451
CseI	GACGC	1 cut(s)	1626
Csp6I	GTAC	3 cut(s)	1062, 1487, 1713
CviAII	CATG	4 cut(s)	928, 1096, 1145, 1641
CviQI	GTAC	3 cut(s)	1062, 1487, 1713
DpnI	GATC	2 cut(s)	406, 747
DpnII	GATC	2 cut(s)	404, 745
DraI	TTTAAA	1 cut(s)	1071
EaeI	YGGCCR	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	1133
Eco130I	CCWWGG	2 cut(s)	717, 762
Eco147I	AGGCCT	1 cut(s)	1651
Eco24I	GRGCYC	2 cut(s)	609, 1135
Eco47I	GGWCC	1 cut(s)	1451
Eco53kI	GAGCTC	1 cut(s)	1133
Eco57I	CTGAAG	3 cut(s)	22, 547, 1299
Eco81I	CCTNAGG	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	1133
EcoNI	CCTNNNNNAGG	2 cut(s)	986, 1009
EcoRII	CCWGG	2 cut(s)	1440, 1570
EcoT14I	CCWWGG	2 cut(s)	717, 762
EcoT22I	ATGCAT	1 cut(s)	1500
EcoT38I	GRGCYC	2 cut(s)	609, 1135
ErhI	CCWWGG	2 cut(s)	717, 762
FaeI	CATG	4 cut(s)	931, 1099, 1148, 1644
FalI	AAGNNNNNCTT	2 cut(s)	1067, 1099
FaqI	GGGAC	2 cut(s)	1069, 1103
FatI	CATG	4 cut(s)	927, 1095, 1144, 1640
FauI	CCCGC	2 cut(s)	1080, 1521
FblI	GTMKAC	1 cut(s)	670
FokI	GGATG	3 cut(s)	202, 296, 1556
FriOI	GRGCYC	2 cut(s)	609, 1135
FspBI	CTAG	7 cut(s)	156, 168, 408, 1208, 1295, 1463, 1704
GlaI	GCGC	1 cut(s)	1404
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	2 cut(s)	48, 1007
HaeII	RGCGCY	1 cut(s)	1406
HaeIII	GGCC	5 cut(s)	130, 151, 523, 1361, 1651
HapII	CCGG	2 cut(s)	127, 536
HgaI	GACGC	1 cut(s)	1626
HhaI	GCGC	1 cut(s)	1405
Hin1I	GRCGYC	1 cut(s)	1637
Hin1II	CATG	4 cut(s)	931, 1099, 1148, 1644
Hin6I	GCGC	1 cut(s)	1403
HinP1I	GCGC	1 cut(s)	1403
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	3 cut(s)	34, 574, 899
HinfI	GANTC	8 cut(s)	628, 883, 906, 1019, 1226, 1466, 1472, 1511
HpaII	CCGG	2 cut(s)	127, 536
HphI	GGTGA	1 cut(s)	1318
Hpy166II	GTNNAC	3 cut(s)	646, 671, 874
Hpy188I	TCNGA	9 cut(s)	114, 243, 436, 655, 853, 961, 1024, 1471, 1564
Hpy8I	GTNNAC	3 cut(s)	646, 671, 874
HpyAV	CCTTC	7 cut(s)	716, 897, 920, 992, 1103, 1245, 1595
HpyCH4IV	ACGT	2 cut(s)	9, 445
HpySE526I	ACGT	2 cut(s)	9, 445
Hsp92I	GRCGYC	1 cut(s)	1637
Hsp92II	CATG	4 cut(s)	931, 1099, 1148, 1644
HspAI	GCGC	1 cut(s)	1403
KroI	GCCGGC	1 cut(s)	126
KroNI	GCCGGC	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	404, 745
LmnI	GCTCC	7 cut(s)	72, 184, 532, 587, 791, 1196, 1237
LweI	GCATC	2 cut(s)	34, 440
MaeI	CTAG	7 cut(s)	156, 168, 408, 1208, 1295, 1463, 1704
MaeII	ACGT	2 cut(s)	9, 445
MaeIII	GTNAC	1 cut(s)	1172
MalI	GATC	2 cut(s)	406, 747
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	2 cut(s)	404, 745
MboII	GAAGA	3 cut(s)	866, 1199, 1506
MflI	RGATCY	2 cut(s)	404, 745
MhlI	GDGCHC	3 cut(s)	609, 796, 1135
MluCI	AATT	4 cut(s)	276, 1116, 1150, 1336
MlyI	GAGTC	2 cut(s)	1466, 1475
MmeI	TCCRAC	1 cut(s)	366
Mph1103I	ATGCAT	1 cut(s)	1500
MroNI	GCCGGC	1 cut(s)	126
MseI	TTAA	5 cut(s)	141, 396, 518, 1070, 1717
MspA1I	CMGCKG	3 cut(s)	713, 1277, 1525
MspI	CCGG	2 cut(s)	127, 536
MspR9I	CCNGG	3 cut(s)	537, 1442, 1572
Mva1269I	GAATGC	4 cut(s)	121, 547, 973, 1498
MvaI	CCWGG	2 cut(s)	1442, 1572
NaeI	GCCGGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	537
NdeII	GATC	2 cut(s)	404, 745
NgoMIV	GCCGGC	1 cut(s)	126
NlaIII	CATG	4 cut(s)	931, 1099, 1148, 1644
NlaIV	GGNNCC	4 cut(s)	324, 534, 589, 1452
NsiI	ATGCAT	1 cut(s)	1500
NspI	RCATGY	1 cut(s)	1099
PceI	AGGCCT	1 cut(s)	1651
PciI	ACATGT	1 cut(s)	1095
PctI	GAATGC	4 cut(s)	121, 547, 973, 1498
PdiI	GCCGGC	1 cut(s)	128
PfeI	GAWTC	6 cut(s)	628, 883, 906, 1019, 1226, 1511
PflMI	CCANNNNNTGG	1 cut(s)	1447
PleI	GAGTC	2 cut(s)	1466, 1474
PpsI	GAGTC	2 cut(s)	1466, 1474
Ppu21I	YACGTR	1 cut(s)	446
PscI	ACATGT	1 cut(s)	1095
Psp124BI	GAGCTC	1 cut(s)	1135
Psp6I	CCWGG	2 cut(s)	1440, 1570
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	1440, 1570
PspN4I	GGNNCC	4 cut(s)	324, 534, 589, 1452
PspPI	GGNCC	1 cut(s)	1451
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	404, 745
PvuII	CAGCTG	3 cut(s)	713, 1277, 1525
RsaI	GTAC	3 cut(s)	1063, 1488, 1714
RsaNI	GTAC	3 cut(s)	1062, 1487, 1713
SacI	GAGCTC	1 cut(s)	1135
SaqAI	TTAA	5 cut(s)	141, 396, 518, 1070, 1717
Sau3AI	GATC	2 cut(s)	404, 745
Sau96I	GGNCC	1 cut(s)	1451
SchI	GAGTC	2 cut(s)	1466, 1475
ScrFI	CCNGG	3 cut(s)	537, 1442, 1572
SduI	GDGCHC	3 cut(s)	609, 796, 1135
SfaNI	GCATC	2 cut(s)	34, 440
SfcI	CTRYAG	2 cut(s)	300, 891
SinI	GGWCC	1 cut(s)	1451
SmlI	CTYRAG	4 cut(s)	623, 864, 1220, 1392
SmoI	CTYRAG	4 cut(s)	623, 864, 1220, 1392
Sse9I	AATT	4 cut(s)	276, 1116, 1150, 1336
SseBI	AGGCCT	1 cut(s)	1651
SsiI	CCGC	5 cut(s)	187, 347, 591, 1087, 1528
SspMI	CTAG	7 cut(s)	156, 168, 408, 1208, 1295, 1463, 1704
SstI	GAGCTC	1 cut(s)	1135
StuI	AGGCCT	1 cut(s)	1651
StyD4I	CCNGG	3 cut(s)	535, 1440, 1570
StyI	CCWWGG	2 cut(s)	717, 762
TaiI	ACGT	2 cut(s)	12, 448
TaqI	TCGA	3 cut(s)	21, 1414, 1597
TasI	AATT	4 cut(s)	276, 1116, 1150, 1336
TatI	WGTACW	2 cut(s)	1486, 1712
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	6 cut(s)	628, 883, 906, 1019, 1226, 1511
Tru1I	TTAA	5 cut(s)	141, 396, 518, 1070, 1717
Tru9I	TTAA	5 cut(s)	141, 396, 518, 1070, 1717
TscAI	CASTG	2 cut(s)	229, 1056
TspDTI	ATGAA	5 cut(s)	330, 851, 902, 908, 1161
TspGWI	ACGGA	1 cut(s)	986
TspRI	CASTG	2 cut(s)	229, 1056
Van91I	CCANNNNNTGG	1 cut(s)	1447
VpaK11BI	GGWCC	1 cut(s)	1451
XagI	CCTNNNNNAGG	2 cut(s)	986, 1009
XapI	RAATTY	2 cut(s)	1150, 1336
XbaI	TCTAGA	2 cut(s)	1462, 1703
XceI	RCATGY	1 cut(s)	1099
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1336
XmiI	GTMKAC	1 cut(s)	670
XspI	CTAG	7 cut(s)	156, 168, 408, 1208, 1295, 1463, 1704
Zsp2I	ATGCAT	1 cut(s)	1500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.