MD16G1187900.v1.1

RAN GTPase-activating protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
16295383 .. 16299007
3625 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1187900.v1.1.491

Sequence Viewer

Length: 1596 bp
ATGGATGCCACAACTCTGAATTCAGAACGCCGTCCATTTTCAATTAAACTATGGCCTCCTAGTCAAAATACAAGGAAAGTGCTTGTGGAGCGGATGATAAACAATCTTAGCTCTAAATCCCTTTTCACTGAGAAGTATGGCTGTCTGAGTAAGGAAGAGGCTGAGGAAAATGCAAAACGAATTGAGGATGTTGCTTTTGCTACTGCAGATCAAAACTATGAAAATGAACCTGATGGGGATGGAAGTTCTGCAGTGCAGCTTTATGCCCGGGAATGCAGTAAGCTCCTGCTTGAAGTTCTCAAAAAAGGACCTAGAAGCAAGGAGGATGGAAAAGTGACATCTGGTACCACTCCCACTGAGACCTTGTTTGATATATCGAAGGCCCAACGGGCTTTTATAGAGGCTGAGGAAGCTGAGGAGCTTTTGAAGTCACTGAAGGAGCCAGGGAACACTTACACCAAAATATGCTTCAGCAATAGAAGCTTTGGTCTCGGAGCAGCCCGTGCTGCTGAGCCCATATTGGTTTCTCTTAAGAACCAGTTGAAAGAAGTTGACCTTTCAGATTTTATAGCAGGAAGACCGGAGGCAGAAGCTCTTGAAGTCATGAATATATTTGCCGCTGCCTTAGAAGGTAGTGTTTTGAAGTATTTGAATCTCTCCAACAATGCCTTGGGTGAGAAAGGTGTTCGGGCTTTTGGGGCACTCCTGAAATCACAAAGTTACTTGGAGGAACTCTATTTGATGAATGATGGCATTTCAGAAGAAGCTGCTCGAGCAGTTTGTGAGTTGATTCCTTCCACAGAGAAGCTTCGAGTCCTCCATTTTCATAATAATATGACAGGAGATGAAGGGGCAATTGCTATTGCTGAGGTTGTCAAGCGTTCTCCCCTATTGAACAATTTCCGTTGCTCCTCCACAAGGGTTGGCTCTGAGGGAGGAGTTGCCTTATCTGAAGCTCTTGGGACTTGTACCCATTTGGAAAAGCTGGACTTGCGGGACAATATGTTTGGTGTAGAAGGTGGAGTTGCATTGAGTAAAGCTCTTTCCAAGCATGACAATTTGACAGAGATTTACCTTAGTTACTTGAACCTAGAAGATGAGGGTGCAGTTGCAATTGCCAATGTTCTCAAGGAATCAGCTCCTGCACTTGAAGTCCTTGACATTGCTGGAAACGACATAACAGCTAAAGCTGCTCCTGCTATAGCAGCTTGTATAGCAGCCAAACCACATCTGGCCAAGCTGAATTTAGGTGAGAACATCCTTAAGGATGAAGGCACTATTCAGATCAGCAAGGTGTTGGAGGGCCATGCGGAGTTGCAGGAAGTTGATTTCAACACCAACCAAATCAGAAGAGCAGGGGCTCGTGCTTTGGCGCAGGCTGTGGTTCAGAAGCCCGGTTTTAAGTTGCTCAACATCAATGCAAATTTCATTTCTGATGAGGGCATTGATGAGCTGAAGGATGCTTTCAAGAAATCTCCCGACGTGCTTGGATCTTTGGACGAGAATGACCCTGAAGGAGAAGATGACGATGATGAAGATGAAGATGACGACAAAGAATCTGGAGAGGGCGAAGGCAATGAGGATGAATTGGAATAA

Protein Analysis

532

Amino Acids

57.69

Weight (kDa)

4.63

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WPP PF13943 14 - 109 7.2e-37 WPP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009885)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 344
AccBSI CCGCTC 1 cut(s) 91
AciI CCGC 4 cut(s) 91, 618, 994, 1310
AclWI GGATC 1 cut(s) 1498
AcoI YGGCCR 1 cut(s) 1233
AcsI RAATTY 3 cut(s) 19, 1243, 1423
AcuI CTGAAG 5 cut(s) 454, 455, 972, 1475, 1533
AfaI GTAC 2 cut(s) 346, 970
AfiI CCNNNNNNNGG 1 cut(s) 918
AflII CTTAAG 2 cut(s) 530, 1262
AjiI CACGTC 1 cut(s) 1483
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
Alw26I GTCTC 2 cut(s) 353, 494
AlwI GGATC 1 cut(s) 1498
AlwNI CAGNNNCTG 1 cut(s) 1142
Ama87I CYCGRG 2 cut(s) 267, 771
AoxI GGCC 4 cut(s) 53, 381, 1233, 1303
ApeKI GCWGC 8 cut(s) 256, 497, 506, 620, 767, 1190, 1205, 1217
ApoI RAATTY 3 cut(s) 19, 1243, 1423
ArsI GACNNNNNNTTYG 2 cut(s) 989, 1021
Asp700I GAANNNNTTC 1 cut(s) 899
Asp718I GGTACC 1 cut(s) 344
AspLEI GCGC 1 cut(s) 1375
AspS9I GGNCC 3 cut(s) 308, 382, 1303
AsuC2I CCSGG 3 cut(s) 268, 269, 1395
AsuHPI GGTGA 2 cut(s) 686, 1262
AvaI CYCGRG 2 cut(s) 267, 771
AvaII GGWCC 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 703
BalI TGGCCA 1 cut(s) 1235
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 2 cut(s) 516, 1363
BauI CACGAG 1 cut(s) 1362
BbsI GAAGAC 1 cut(s) 583
BbvCI CCTCAGC 4 cut(s) 162, 405, 414, 867
BbvI GCAGC 8 cut(s) 268, 493, 509, 607, 754, 1177, 1217, 1229
BccI CCATC 4 cut(s) 227, 233, 320, 743
BceAI ACGGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 3 cut(s) 268, 269, 1395
BcoDI GTCTC 2 cut(s) 353, 494
BfaI CTAG 3 cut(s) 60, 312, 1091
BfmI CTRYAG 3 cut(s) 204, 249, 1200
BfrI CTTAAG 2 cut(s) 530, 1262
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 9 cut(s) 257, 498, 507, 618, 621, 768, 1191, 1206, 1218
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 9 cut(s) 258, 499, 508, 619, 622, 769, 1192, 1207, 1219
Bme1390I CCNGG 4 cut(s) 268, 269, 444, 1395
Bme18I GGWCC 1 cut(s) 308
BmeT110I CYCGRG 2 cut(s) 267, 771
BmgBI CACGTC 1 cut(s) 1483
BmgT120I GGNCC 3 cut(s) 308, 382, 1303
BmiI GGNNCC 2 cut(s) 346, 441
BmrFI CCNGG 4 cut(s) 268, 269, 444, 1395
BmsI GCATC 1 cut(s) 1450
BpiI GAAGAC 1 cut(s) 583
BplI GAGNNNNNCTC 2 cut(s) 1024, 1056
BpmI CTGGAG 1 cut(s) 1581
Bpu10I CCTNAGC 4 cut(s) 162, 405, 414, 867
Bpu1102I GCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 1112
BpuMI CCSGG 3 cut(s) 268, 269, 1395
BsaI GGTCTC 2 cut(s) 353, 494
BsaJI CCNNGG 3 cut(s) 267, 443, 669
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 918
Bse1I ACTGG 1 cut(s) 538
Bse3DI GCAATG 2 cut(s) 1161, 1582
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 267, 443, 669
BseGI GGATG 9 cut(s) 10, 99, 193, 244, 331, 1257, 1273, 1465, 1588
BseLI CCNNNNNNNGG 1 cut(s) 918
BseMI GCAATG 2 cut(s) 1161, 1582
BseMII CTCAG 9 cut(s) 120, 137, 153, 348, 396, 405, 501, 858, 921
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 3 cut(s) 431, 901, 951
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 8 cut(s) 268, 493, 509, 607, 754, 1177, 1217, 1229
BsgI GTGCAG 3 cut(s) 275, 1125, 1128
BshFI GGCC 4 cut(s) 55, 383, 1235, 1305
BshNI GGYRCC 1 cut(s) 344
BsiHKCI CYCGRG 2 cut(s) 267, 771
BsiSI CCGG 3 cut(s) 268, 581, 1395
BslFI GGGAC 2 cut(s) 976, 1010
BslI CCNNNNNNNGG 1 cut(s) 918
BsmAI GTCTC 2 cut(s) 353, 494
BsmFI GGGAC 2 cut(s) 976, 1010
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 4 cut(s) 55, 383, 1235, 1305
Bso31I GGTCTC 2 cut(s) 353, 494
BsoBI CYCGRG 2 cut(s) 267, 771
Bsp1286I GDGCHC 3 cut(s) 516, 703, 1363
Bsp143I GATC 3 cut(s) 208, 1284, 1490
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 4 cut(s) 91, 618, 994, 1310
BspANI GGCC 4 cut(s) 55, 383, 1235, 1305
BspCNI CTCAG 9 cut(s) 121, 138, 154, 349, 397, 406, 502, 859, 922
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 346, 441
BspMAI CTGCAG 2 cut(s) 208, 253
BspPI GGATC 1 cut(s) 1498
BspQI GCTCTTC 1 cut(s) 1345
BspT107I GGYRCC 1 cut(s) 344
BspTI CTTAAG 2 cut(s) 530, 1262
BspTNI GGTCTC 2 cut(s) 353, 494
BsrBI CCGCTC 1 cut(s) 91
BsrDI GCAATG 2 cut(s) 1161, 1582
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 3 cut(s) 267, 443, 669
BssMI GATC 3 cut(s) 208, 1284, 1490
BssSI CACGAG 1 cut(s) 1362
BssT1I CCWWGG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 1362
Bst2UI CCWGG 1 cut(s) 444
Bst6I CTCTTC 2 cut(s) 150, 1345
BstAFI CTTAAG 2 cut(s) 530, 1262
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 1377
BstENI CCTNNNNNAGG 1 cut(s) 916
BstF5I GGATG 9 cut(s) 10, 99, 193, 244, 331, 1257, 1273, 1465, 1588
BstHHI GCGC 1 cut(s) 1375
BstKTI GATC 3 cut(s) 211, 1287, 1493
BstMAI GTCTC 2 cut(s) 353, 494
BstMBI GATC 3 cut(s) 208, 1284, 1490
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 4 cut(s) 266, 267, 442, 1393
BstSFI CTRYAG 3 cut(s) 204, 249, 1200
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 8 cut(s) 268, 493, 509, 607, 754, 1177, 1217, 1229
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 1 cut(s) 1490
BstYI RGATCY 1 cut(s) 1490
BsuRI GGCC 4 cut(s) 55, 383, 1235, 1305
BtrI CACGTC 1 cut(s) 1483
BtsCI GGATG 9 cut(s) 10, 99, 193, 244, 331, 1257, 1273, 1465, 1588
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 4 cut(s) 126, 258, 354, 431
Cac8I GCNNGC 1 cut(s) 1377
CaiI CAGNNNCTG 1 cut(s) 1142
CciI TCATGA 1 cut(s) 603
CfoI GCGC 1 cut(s) 1375
Cfr13I GGNCC 3 cut(s) 308, 382, 1303
Cfr9I CCCGGG 1 cut(s) 267
Csp6I GTAC 2 cut(s) 345, 969
CspCI CAANNNNNGTGG 2 cut(s) 904, 939
CviAII CATG 3 cut(s) 604, 1052, 1307
CviQI GTAC 2 cut(s) 345, 969
DpnI GATC 3 cut(s) 210, 1286, 1492
DpnII GATC 3 cut(s) 208, 1284, 1490
EaeI YGGCCR 1 cut(s) 1233
Eam1104I CTCTTC 2 cut(s) 150, 1345
EarI CTCTTC 2 cut(s) 150, 1345
Eco130I CCWWGG 1 cut(s) 669
Eco24I GRGCYC 2 cut(s) 516, 1363
Eco31I GGTCTC 2 cut(s) 353, 494
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 5 cut(s) 454, 455, 972, 1475, 1533
Eco88I CYCGRG 2 cut(s) 267, 771
EcoNI CCTNNNNNAGG 1 cut(s) 916
EcoO109I RGGNCCY 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 669
EcoT38I GRGCYC 2 cut(s) 516, 1363
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 3 cut(s) 607, 1055, 1310
FalI AAGNNNNNCTT 4 cut(s) 540, 572, 974, 1006
FaqI GGGAC 2 cut(s) 976, 1010
FatI CATG 3 cut(s) 603, 1051, 1306
FauI CCCGC 1 cut(s) 987
Fnu4HI GCNGC 9 cut(s) 257, 498, 507, 618, 621, 768, 1191, 1206, 1218
FokI GGATG 8 cut(s) 17, 106, 200, 251, 338, 1244, 1280, 1472
FriOI GRGCYC 2 cut(s) 516, 1363
Fsp4HI GCNGC 9 cut(s) 257, 498, 507, 618, 621, 768, 1191, 1206, 1218
FspBI CTAG 3 cut(s) 60, 312, 1091
GlaI GCGC 1 cut(s) 1374
GluI GCNGC 9 cut(s) 257, 498, 507, 618, 621, 768, 1191, 1206, 1218
GsuI CTGGAG 1 cut(s) 1581
HaeIII GGCC 4 cut(s) 55, 383, 1235, 1305
HapII CCGG 3 cut(s) 268, 581, 1395
HhaI GCGC 1 cut(s) 1375
Hin1II CATG 3 cut(s) 607, 1055, 1310
Hin6I GCGC 1 cut(s) 1373
HinP1I GCGC 1 cut(s) 1373
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 2 cut(s) 481, 806
HinfI GANTC 5 cut(s) 652, 790, 813, 1133, 1556
HpaII CCGG 3 cut(s) 268, 581, 1395
HphI GGTGA 2 cut(s) 686, 1262
Hpy166II GTNNAC 1 cut(s) 553
Hpy188III TCNNGA 6 cut(s) 596, 604, 706, 1468, 1478, 1560
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 1 cut(s) 1484
HpyCH4IV ACGT 1 cut(s) 1482
HpySE526I ACGT 1 cut(s) 1482
Hsp92II CATG 3 cut(s) 607, 1055, 1310
HspAI GCGC 1 cut(s) 1373
KpnI GGTACC 1 cut(s) 348
Kzo9I GATC 3 cut(s) 208, 1284, 1490
LguI GCTCTTC 1 cut(s) 1345
LmnI GCTCC 8 cut(s) 88, 288, 418, 439, 494, 914, 1144, 1198
Lsp1109I GCAGC 8 cut(s) 268, 493, 509, 607, 754, 1177, 1217, 1229
LweI GCATC 1 cut(s) 1450
MaeI CTAG 3 cut(s) 60, 312, 1091
MaeII ACGT 1 cut(s) 1482
MaeIII GTNAC 4 cut(s) 334, 429, 719, 1079
MalI GATC 3 cut(s) 210, 1286, 1492
MbiI CCGCTC 1 cut(s) 91
MboI GATC 3 cut(s) 208, 1284, 1490
MboII GAAGA 8 cut(s) 167, 588, 773, 1106, 1362, 1532, 1547, 1553
MfeI CAATTG 2 cut(s) 855, 1113
MflI RGATCY 1 cut(s) 1490
MhlI GDGCHC 3 cut(s) 516, 703, 1363
MlsI TGGCCA 1 cut(s) 1235
MluNI TGGCCA 1 cut(s) 1235
MlyI GAGTC 1 cut(s) 822
MmeI TCCRAC 2 cut(s) 684, 1278
Mox20I TGGCCA 1 cut(s) 1235
MroXI GAANNNNTTC 1 cut(s) 899
MscI TGGCCA 1 cut(s) 1235
MseI TTAA 4 cut(s) 45, 531, 1263, 1401
Msp20I TGGCCA 1 cut(s) 1235
MspA1I CMGCKG 1 cut(s) 620
MspCI CTTAAG 2 cut(s) 530, 1262
MspI CCGG 3 cut(s) 268, 581, 1395
MspR9I CCNGG 4 cut(s) 268, 269, 444, 1395
MunI CAATTG 2 cut(s) 855, 1113
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 444
NciI CCSGG 3 cut(s) 268, 269, 1395
NdeII GATC 3 cut(s) 208, 1284, 1490
NlaIII CATG 3 cut(s) 607, 1055, 1310
NlaIV GGNNCC 2 cut(s) 346, 441
NmuCI GTSAC 2 cut(s) 334, 429
PaeR7I CTCGAG 1 cut(s) 771
PagI TCATGA 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 1345
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 899
PfeI GAWTC 4 cut(s) 652, 790, 1133, 1556
PkrI GCNGC 9 cut(s) 258, 499, 508, 619, 622, 769, 1192, 1207, 1219
PleI GAGTC 1 cut(s) 821
PpsI GAGTC 1 cut(s) 821
PpuMI RGGWCCY 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 346, 441
PspPI GGNCC 3 cut(s) 308, 382, 1303
PspPPI RGGWCCY 1 cut(s) 308
PspXI VCTCGAGB 1 cut(s) 771
PstI CTGCAG 2 cut(s) 208, 253
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 1 cut(s) 1490
RsaI GTAC 2 cut(s) 346, 970
RsaNI GTAC 2 cut(s) 345, 969
SapI GCTCTTC 1 cut(s) 1345
SaqAI TTAA 4 cut(s) 45, 531, 1263, 1401
SatI GCNGC 9 cut(s) 257, 498, 507, 618, 621, 768, 1191, 1206, 1218
Sau3AI GATC 3 cut(s) 208, 1284, 1490
Sau96I GGNCC 3 cut(s) 308, 382, 1303
SchI GAGTC 1 cut(s) 822
ScrFI CCNGG 4 cut(s) 268, 269, 444, 1395
SduI GDGCHC 3 cut(s) 516, 703, 1363
SfaNI GCATC 1 cut(s) 1450
SfcI CTRYAG 3 cut(s) 204, 249, 1200
Sfr274I CTCGAG 1 cut(s) 771
SinI GGWCC 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 771
SmaI CCCGGG 1 cut(s) 269
SmlI CTYRAG 4 cut(s) 530, 771, 1127, 1262
SmoI CTYRAG 4 cut(s) 530, 771, 1127, 1262
SsiI CCGC 4 cut(s) 91, 618, 994, 1310
SspMI CTAG 3 cut(s) 60, 312, 1091
StyD4I CCNGG 4 cut(s) 266, 267, 442, 1393
StyI CCWWGG 1 cut(s) 669
TaiI ACGT 1 cut(s) 1485
TaqI TCGA 3 cut(s) 377, 772, 811
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 4 cut(s) 652, 790, 1133, 1556
Tru1I TTAA 4 cut(s) 45, 531, 1263, 1401
Tru9I TTAA 4 cut(s) 45, 531, 1263, 1401
TscAI CASTG 4 cut(s) 133, 258, 361, 438
TseFI GTSAC 2 cut(s) 334, 429
TseI GCWGC 8 cut(s) 256, 497, 506, 620, 767, 1190, 1205, 1217
Tsp45I GTSAC 2 cut(s) 334, 429
TspGWI ACGGA 1 cut(s) 893
TspMI CCCGGG 1 cut(s) 267
TspRI CASTG 4 cut(s) 133, 258, 361, 438
Vha464I CTTAAG 2 cut(s) 530, 1262
VpaK11BI GGWCC 1 cut(s) 308
XagI CCTNNNNNAGG 1 cut(s) 916
XapI RAATTY 3 cut(s) 19, 1243, 1423
XcmI CCANNNNNNNNNTGG 2 cut(s) 667, 1228
XhoI CTCGAG 1 cut(s) 771
XmaI CCCGGG 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 899
XspI CTAG 3 cut(s) 60, 312, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.