Rw4G017660

RAN GTPase-activating protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
39687586 .. 39689959
2374 bp
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UTR
Exon/CDS
Intron
Rw4G017660.1

Sequence Viewer

Length: 1617 bp
ATGGACACCACATCTCTGAATGCGAAACGCCGGCCATTTTCACTTAAACTATGGCCTCCTAGCCAAAATACTAGGCAAGTGCTTGTGGAGCGGATGATAAACAATCTTAGCACTAAATCCATTTTCACTGAAAAGTATGGCACTCTGAGTAAGGAGGAGGCTGAGGAAAATGCAAAACAAATTGAGGATGTGGCTTTTGTTGCTGCAGACCAGAAGTATGAAAAGGAACCAGATGGCGATGGAGGTTCTGCGGTGCAGTTGTATGCTCGGGAATGTAGTAAGCTGTTGTTGGAAGTTCTTAAAAAGGGATCTAGTAGCAAGGAGAGTAAAGTGGCATCTGACACTACACCTAAAGAAACTTTGTTTGATATATCTAAAGGCACACGGGCATTTATTGAAGCTGAGGAAGCAGAGGAACTTTTAAGGCCATTGAGGGAGCCGGGGAATGCCTACACTAAAATATGCTTCAGCAATAGAAGCTTTGGTTTAGGAGCCGCCCGTGTTGCTGAGCCCATTCTGGTTTCCCTCAAGAATCAGTTGAAAGAAGTTGACTTATCAGATTTTATAGCAGGTAGACCTGAGGCAGAAGCTCTTGAAGTCATCAGTATATTTGCAGCTGCCTTGGAAGGTAGTGCATTGAGATTTTTGAATCTCTCAAACAATGCCTTGGGCGAGAAAGGTGTTAGGGCATTTGGAGCACTCCTGAAATCACAAAGTTGCTTGGAGGAACTCTATTTGATGAATGATGGCATTTCAGAAGAAGCTGCTCAAGCAGTTCACGAGTTGATTCCTTCTACAGAGAAGCTTAGAATCCTTCATTTTCATAACAACATGACAGGAAATGAGGGGGCATTTGCTATTTCTGAGGTTGTGAAGCATTCTCCCCTTCTGGAGGATTTCCGTTGTTCCTCTACGAGGGTAGAATCTGAGGGAGGAGTTGCGTTATGTGAGGCACTGGGGACTTGTACCCATTTAAAGAAGCTGGACTTGCGGGACAACATGTTTGGCGTAGAAGGTGGAATTGCATTGAGTAGAGCTCTTTCCAAGCATGAAAATTTGAAAGAGATTTACCTCAGTTACCTGAACCTTGAAGATGAGGGAGCAGTTGCACTAGCCAATGTTCTCAAGGAATCAGCTCCTTCACTTGAAGTCTTTGACATTGCTGGCAATGACATAACAGCTGAAGCTGCTTCTGCTCTAGCAGCTTGTATAGCAGCAAAGACACTTCTCACCAAGCTGAATTTGGGTGAGAATGAACTCAAGGATGAAGGCACTATTCAGATCAGCCAGGTGTTAGATGGTCTTTCCCAGTTAAGGGAAGTTGACTTGAACACCAACAAAATAAGAAGAGCTGGAGCCCGAGTGTTGGCACAGGCTGTGGTTCAGAAGCCTGATTTTAAGTTGCTGAACATCAATGGAAATTTCATATCTGATGAAGGCGTACATGAGGTAACGGGTTTATTCAAGAAATCTCCTCACCTGCTTGGCCCTTTGGATGAGAATGACCCTGAAGGAGAGGATGATGATGCTGAAGACGATGAAGAATCTGGAGATGATGAAGTTAATGATGACGGGTTAGGATCAAAGCTGAAGAATCTCAAAGTTAACCAAGAGTAA

Protein Analysis

538

Amino Acids

58.61

Weight (kDa)

4.78

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WPP PF13943 14 - 109 2.3e-37 WPP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009885)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1488
Acc36I ACCTGC 2 cut(s) 560, 1488
AccBSI CCGCTC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 574
AciI CCGC 4 cut(s) 91, 251, 495, 991
AclWI GGATC 2 cut(s) 316, 1588
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 3 cut(s) 1054, 1240, 1420
AcuI CTGAAG 5 cut(s) 451, 1203, 1530, 1551, 1610
AfaI GTAC 2 cut(s) 967, 1443
AfiI CCNNNNNNNGG 5 cut(s) 892, 915, 1314, 1315, 1366
AflIII ACRYGT 1 cut(s) 999
AgsI TTSAA 9 cut(s) 398, 541, 596, 649, 1060, 1091, 1148, 1330, 1465
AjnI CCWGG 1 cut(s) 1287
Alw21I GWGCWC 2 cut(s) 700, 1039
AlwI GGATC 2 cut(s) 316, 1588
Ama87I CYCGRG 2 cut(s) 267, 1359
AoxI GGCC 4 cut(s) 32, 53, 425, 1486
ApeKI GCWGC 7 cut(s) 203, 614, 617, 764, 1187, 1202, 1214
ApoI RAATTY 3 cut(s) 1054, 1240, 1420
ArsI GACNNNNNNTTYG 2 cut(s) 986, 1018
AspS9I GGNCC 1 cut(s) 1487
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 3 cut(s) 1222, 1259, 1469
AvaI CYCGRG 2 cut(s) 267, 1359
AxyI CCTNAGG 1 cut(s) 579
BanII GRGCYC 3 cut(s) 513, 1039, 1360
BauI CACGAG 1 cut(s) 779
BbsI GAAGAC 1 cut(s) 1539
Bbv12I GWGCWC 2 cut(s) 700, 1039
BbvCI CCTCAGC 2 cut(s) 162, 402
BbvI GCAGC 7 cut(s) 190, 604, 626, 751, 1174, 1214, 1226
BccI CCATC 4 cut(s) 227, 233, 740, 1292
BciT130I CCWGG 1 cut(s) 1289
BcnI CCSGG 1 cut(s) 441
BfaI CTAG 5 cut(s) 60, 72, 312, 1112, 1199
BfmI CTRYAG 2 cut(s) 204, 795
BfuAI ACCTGC 2 cut(s) 560, 1488
BisI GCNGC 8 cut(s) 204, 495, 615, 618, 765, 1188, 1203, 1215
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 8 cut(s) 205, 496, 616, 619, 766, 1189, 1204, 1216
Bme1390I CCNGG 2 cut(s) 441, 1289
BmeT110I CYCGRG 2 cut(s) 267, 1359
BmgT120I GGNCC 1 cut(s) 1487
BmiI GGNNCC 4 cut(s) 228, 438, 493, 1357
BmrFI CCNGG 2 cut(s) 441, 1289
BmrI ACTGGG 2 cut(s) 965, 1303
BmsI GCATC 2 cut(s) 344, 1516
BmuI ACTGGG 2 cut(s) 965, 1303
BpiI GAAGAC 1 cut(s) 1539
BplI GAGNNNNNCTC 2 cut(s) 1021, 1053
BpmI CTGGAG 3 cut(s) 911, 1374, 1569
Bpu10I CCTNAGC 2 cut(s) 162, 402
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 4 cut(s) 512, 753, 1109, 1244
BpuMI CCSGG 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 440, 621, 666
BsaXI ACNNNNNCTCC 2 cut(s) 1347, 1377
Bsc4I CCNNNNNNNGG 5 cut(s) 892, 915, 1314, 1315, 1366
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 960, 1309
Bse21I CCTNAGG 1 cut(s) 579
Bse3DI GCAATG 2 cut(s) 1158, 1174
BseBI CCWGG 1 cut(s) 1289
BseDI CCNNGG 3 cut(s) 440, 621, 666
BseGI GGATG 5 cut(s) 99, 193, 1270, 1501, 1525
BseLI CCNNNNNNNGG 5 cut(s) 892, 915, 1314, 1315, 1366
BseMI GCAATG 2 cut(s) 1158, 1174
BseMII CTCAG 8 cut(s) 137, 153, 393, 498, 570, 855, 918, 1087
BseNI ACTGG 2 cut(s) 960, 1309
BseRI GAGGAG 3 cut(s) 170, 948, 1464
BseXI GCAGC 7 cut(s) 190, 604, 626, 751, 1174, 1214, 1226
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 4 cut(s) 34, 55, 427, 1488
BsiHKAI GWGCWC 2 cut(s) 700, 1039
BsiHKCI CYCGRG 2 cut(s) 267, 1359
BsiSI CCGG 2 cut(s) 31, 440
BslFI GGGAC 2 cut(s) 973, 1007
BslI CCNNNNNNNGG 5 cut(s) 892, 915, 1314, 1315, 1366
BsmFI GGGAC 2 cut(s) 973, 1007
BsmI GAATGC 3 cut(s) 25, 451, 877
BsnI GGCC 4 cut(s) 34, 55, 427, 1488
BsoBI CYCGRG 2 cut(s) 267, 1359
Bsp1286I GDGCHC 4 cut(s) 513, 700, 1039, 1360
Bsp143I GATC 3 cut(s) 308, 1281, 1580
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 4 cut(s) 91, 251, 495, 991
BspANI GGCC 4 cut(s) 34, 55, 427, 1488
BspCNI CTCAG 8 cut(s) 138, 154, 394, 499, 571, 856, 919, 1086
BspLI GGNNCC 4 cut(s) 228, 438, 493, 1357
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 2 cut(s) 560, 1488
BspPI GGATC 2 cut(s) 316, 1588
BspQI GCTCTTC 1 cut(s) 1342
BsrBI CCGCTC 1 cut(s) 91
BsrDI GCAATG 2 cut(s) 1158, 1174
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 2 cut(s) 960, 1309
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 3 cut(s) 440, 621, 666
BssMI GATC 3 cut(s) 308, 1281, 1580
BssSI CACGAG 1 cut(s) 779
BssT1I CCWWGG 2 cut(s) 621, 666
Bst2BI CACGAG 1 cut(s) 779
Bst2UI CCWGG 1 cut(s) 1289
Bst6I CTCTTC 1 cut(s) 1342
BstC8I GCNNGC 2 cut(s) 32, 1165
BstENI CCTNNNNNAGG 2 cut(s) 890, 913
BstF5I GGATG 5 cut(s) 99, 193, 1270, 1501, 1525
BstKTI GATC 3 cut(s) 311, 1284, 1583
BstMBI GATC 3 cut(s) 308, 1281, 1580
BstNI CCWGG 1 cut(s) 1289
BstNSI RCATGY 1 cut(s) 1003
BstSCI CCNGG 2 cut(s) 439, 1287
BstSFI CTRYAG 2 cut(s) 204, 795
BstV1I GCAGC 7 cut(s) 190, 604, 626, 751, 1174, 1214, 1226
BstV2I GAAGAC 1 cut(s) 1539
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
Bsu36I CCTNAGG 1 cut(s) 579
BsuRI GGCC 4 cut(s) 34, 55, 427, 1488
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 5 cut(s) 99, 193, 1270, 1501, 1525
BtsIMutI CAGTG 2 cut(s) 126, 953
BveI ACCTGC 2 cut(s) 560, 1488
Cac8I GCNNGC 2 cut(s) 32, 1165
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 1487
Csp6I GTAC 2 cut(s) 966, 1442
CviAII CATG 4 cut(s) 832, 1000, 1049, 1445
CviQI GTAC 2 cut(s) 966, 1442
DpnI GATC 3 cut(s) 310, 1283, 1582
DpnII GATC 3 cut(s) 308, 1281, 1580
DraI TTTAAA 1 cut(s) 975
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 1342
EarI CTCTTC 1 cut(s) 1342
Ecl136II GAGCTC 1 cut(s) 1037
Eco130I CCWWGG 2 cut(s) 621, 666
Eco24I GRGCYC 3 cut(s) 513, 1039, 1360
Eco53kI GAGCTC 1 cut(s) 1037
Eco57I CTGAAG 5 cut(s) 451, 1203, 1530, 1551, 1610
Eco81I CCTNAGG 1 cut(s) 579
Eco88I CYCGRG 2 cut(s) 267, 1359
EcoICRI GAGCTC 1 cut(s) 1037
EcoNI CCTNNNNNAGG 2 cut(s) 890, 913
EcoRII CCWGG 1 cut(s) 1287
EcoT14I CCWWGG 2 cut(s) 621, 666
EcoT38I GRGCYC 3 cut(s) 513, 1039, 1360
ErhI CCWWGG 2 cut(s) 621, 666
FaeI CATG 4 cut(s) 835, 1003, 1052, 1448
FalI AAGNNNNNCTT 2 cut(s) 971, 1003
FaqI GGGAC 2 cut(s) 973, 1007
FatI CATG 4 cut(s) 831, 999, 1048, 1444
FauI CCCGC 1 cut(s) 984
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 8 cut(s) 204, 495, 615, 618, 765, 1188, 1203, 1215
FokI GGATG 5 cut(s) 106, 200, 1277, 1508, 1532
FriOI GRGCYC 3 cut(s) 513, 1039, 1360
Fsp4HI GCNGC 8 cut(s) 204, 495, 615, 618, 765, 1188, 1203, 1215
FspBI CTAG 5 cut(s) 60, 72, 312, 1112, 1199
GluI GCNGC 8 cut(s) 204, 495, 615, 618, 765, 1188, 1203, 1215
GsuI CTGGAG 3 cut(s) 911, 1374, 1569
HaeIII GGCC 4 cut(s) 34, 55, 427, 1488
HapII CCGG 2 cut(s) 31, 440
Hin1II CATG 4 cut(s) 835, 1003, 1052, 1448
HincII GTYRAC 3 cut(s) 550, 1324, 1606
HindII GTYRAC 3 cut(s) 550, 1324, 1606
HindIII AAGCTT 2 cut(s) 478, 803
HinfI GANTC 8 cut(s) 532, 649, 787, 810, 923, 1130, 1544, 1594
HpaI GTTAAC 1 cut(s) 1606
HpaII CCGG 2 cut(s) 31, 440
HphI GGTGA 3 cut(s) 1222, 1259, 1469
Hpy166II GTNNAC 5 cut(s) 550, 575, 778, 1324, 1606
Hpy188III TCNNGA 8 cut(s) 269, 529, 593, 703, 779, 890, 1465, 1548
Hpy8I GTNNAC 5 cut(s) 550, 575, 778, 1324, 1606
HpyAV CCTTC 9 cut(s) 620, 801, 824, 896, 1007, 1149, 1262, 1430, 1505
HpyCH4V TGCA 7 cut(s) 173, 206, 256, 614, 635, 1025, 1109
Hsp92II CATG 4 cut(s) 835, 1003, 1052, 1448
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
KspAI GTTAAC 1 cut(s) 1606
Kzo9I GATC 3 cut(s) 308, 1281, 1580
LguI GCTCTTC 1 cut(s) 1342
LmnI GCTCC 7 cut(s) 88, 436, 491, 695, 1100, 1141, 1355
Lsp1109I GCAGC 7 cut(s) 190, 604, 626, 751, 1174, 1214, 1226
LweI GCATC 2 cut(s) 344, 1516
MaeI CTAG 5 cut(s) 60, 72, 312, 1112, 1199
MaeIII GTNAC 2 cut(s) 1076, 1450
MalI GATC 3 cut(s) 310, 1283, 1582
MbiI CCGCTC 1 cut(s) 91
MboI GATC 3 cut(s) 308, 1281, 1580
MboII GAAGA 6 cut(s) 770, 1103, 1359, 1544, 1553, 1603
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 4 cut(s) 513, 700, 1039, 1360
MluCI AATT 5 cut(s) 180, 1020, 1054, 1240, 1420
MmeI TCCRAC 1 cut(s) 270
MroNI GCCGGC 1 cut(s) 30
MseI TTAA 8 cut(s) 45, 300, 422, 974, 1313, 1398, 1563, 1605
MspA1I CMGCKG 2 cut(s) 617, 1181
MspI CCGG 2 cut(s) 31, 440
MspR9I CCNGG 2 cut(s) 441, 1289
Mva1269I GAATGC 3 cut(s) 25, 451, 877
MvaI CCWGG 1 cut(s) 1289
NaeI GCCGGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 441
NdeII GATC 3 cut(s) 308, 1281, 1580
NgoMIV GCCGGC 1 cut(s) 30
NlaIII CATG 4 cut(s) 835, 1003, 1052, 1448
NlaIV GGNNCC 4 cut(s) 228, 438, 493, 1357
NspI RCATGY 1 cut(s) 1003
PaqCI CACCTGC 1 cut(s) 1488
PciI ACATGT 1 cut(s) 999
PciSI GCTCTTC 1 cut(s) 1342
PctI GAATGC 3 cut(s) 25, 451, 877
PdiI GCCGGC 1 cut(s) 32
PfeI GAWTC 8 cut(s) 532, 649, 787, 810, 923, 1130, 1544, 1594
PkrI GCNGC 8 cut(s) 205, 496, 616, 619, 766, 1189, 1204, 1216
PscI ACATGT 1 cut(s) 999
Psp124BI GAGCTC 1 cut(s) 1039
Psp6I CCWGG 1 cut(s) 1287
PspGI CCWGG 1 cut(s) 1287
PspN4I GGNNCC 4 cut(s) 228, 438, 493, 1357
PspPI GGNCC 1 cut(s) 1487
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 308
PvuII CAGCTG 2 cut(s) 617, 1181
RsaI GTAC 2 cut(s) 967, 1443
RsaNI GTAC 2 cut(s) 966, 1442
SacI GAGCTC 1 cut(s) 1039
SapI GCTCTTC 1 cut(s) 1342
SaqAI TTAA 8 cut(s) 45, 300, 422, 974, 1313, 1398, 1563, 1605
SatI GCNGC 8 cut(s) 204, 495, 615, 618, 765, 1188, 1203, 1215
Sau3AI GATC 3 cut(s) 308, 1281, 1580
Sau96I GGNCC 1 cut(s) 1487
ScrFI CCNGG 2 cut(s) 441, 1289
SduI GDGCHC 4 cut(s) 513, 700, 1039, 1360
SfaNI GCATC 2 cut(s) 344, 1516
SfcI CTRYAG 2 cut(s) 204, 795
SmlI CTYRAG 4 cut(s) 527, 768, 1124, 1259
SmoI CTYRAG 4 cut(s) 527, 768, 1124, 1259
Sse9I AATT 5 cut(s) 180, 1020, 1054, 1240, 1420
SsiI CCGC 4 cut(s) 91, 251, 495, 991
SspMI CTAG 5 cut(s) 60, 72, 312, 1112, 1199
SstI GAGCTC 1 cut(s) 1039
StyD4I CCNGG 2 cut(s) 439, 1287
StyI CCWWGG 2 cut(s) 621, 666
TasI AATT 5 cut(s) 180, 1020, 1054, 1240, 1420
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 8 cut(s) 532, 649, 787, 810, 923, 1130, 1544, 1594
Tru1I TTAA 8 cut(s) 45, 300, 422, 974, 1313, 1398, 1563, 1605
Tru9I TTAA 8 cut(s) 45, 300, 422, 974, 1313, 1398, 1563, 1605
TscAI CASTG 2 cut(s) 133, 960
TseI GCWGC 7 cut(s) 203, 614, 617, 764, 1187, 1202, 1214
TspGWI ACGGA 1 cut(s) 890
TspRI CASTG 2 cut(s) 133, 960
XagI CCTNNNNNAGG 2 cut(s) 890, 913
XapI RAATTY 3 cut(s) 1054, 1240, 1420
XceI RCATGY 1 cut(s) 1003
XcmI CCANNNNNNNNNTGG 2 cut(s) 1240, 1295
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 5 cut(s) 60, 72, 312, 1112, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.