MD13G1187000.v1.1

RAN GTPase-activating protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
15925167 .. 15928513
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1187000.v1.1.491

Sequence Viewer

Length: 1539 bp
ATGATAAACAATCTTAACTCTAAATCCCTTTTCACTGAGAAGTATGGCTGTCTGAGTAAGGAAGAGGCTGAGGAAAATGCAAAACGAATTGAGGATGTCGCTTTTGCTACTGCAGATCAAAACTATGAAAATGAACCAGATGGGGATGGAAGTTCTGCAGTGCAGCTTTATGCCCGGGAATGCAGTAAGCTCCTGCTGGAAGTTCTTAAAAAGGGACCTAGAAGCAAGGAGGACGGGAAAGTGACATCTGATACCACACCCACTGAGACTTTGTTTGATATATCGAAAGGCCAACGGGCTTTTATTGAGGCTGAGGAAGCTGAGGAGCTTTTGAAGCCACTGAAGGAGCCAGGGAACACTTACACCAAAATATGCTTCAGCAACAGAAGCTTTGGTCTTGGAGCAGCCCGTGTTGCCGAGCCCATATTGGTTTCTCTTAAGAACCAATTGAAAGAAGTTGACCTCTCAGATTTTATAGCAGGAAGACCGGAGGCAGAAGCTCTTGAAGTCATGAATATATTTGCAGCTGCCTTAGAAGGTAGTATCTTGAAGTATCTGAATCTCTCCAACAATGCCTTGGGTGAGAAAGGTGTTCGGGCTTTTGGGGCACTCCTGAAATCACAAAGTTACTTGGAGGAACTCTATTTGATGAATGATGGCATTTCAGAAGAAGCTGCTCGAGCAGTTTGTGAGTTGATTCCTTCCACAGAGAAGCTTAGAGTCCTCCATTTTCATAATAATATGACAGGAGATGAAGGGGCAATTGCTATTGCTGAGGTTGTCAAGCGTTCTCCGCTTTTGGAGAATTTCCGTTGCTCCTCCACGAGGGTAGGCTCCGAGGGAGGAGTTGCCTTATCTGAAGCACTTGGGACTTGTACCCATTTGGAAAAGCTGGACTTGCGGGACAACATGTTTGGTGTAGAAGGTGGAGTCGCATTGAGTAAAGCTCTTTCCAAGCATAACAATTTGACAGAGATTTACCTTAGTTACTTGAACCTAGAAGATGAGGGCACAGTTGCAATTGCCAATGTTCTCAAAGAATCAGCCCCTGCACTTGAAGTCTTTGACATTGCTGGAAATGACATAACTGCTAAAGCTGCTCCTGCTATAGCAGCTTGTATAGCAGCTAAACCACATCTGGCCAAGCTGAATTTGGGTGAGAATAGCCTTAAGGATGAAGGCACTATTCAGATCAGCAAGGTGTTGCAAGGCCATGCCGAGTTGCAGGAAGTTGATTTCAACACCAACCAAATCAGAAGAGCAGGGGCTCGTGCGTTGGCACAGGCTGTGGTTCAGAAGCCCGGTTTTAAGTTGCTCAACATCAATGCAAATTTCATTTCTGATGAGGGCATTGATGAGCTGAAGGATGCATTCAAGAAATCTCCCAACGTGCTTGGATCTTTGGACGAGAATGACCCTGAAGGAGAAGATGACGATGACGAAGATGAAGATGATGACAAAGAATCTGGAGAGGGCAAGGGCAATGAGGATGAATTGGAATCCAAACTGAAAAACCTTGAAGTTGGCCAAGAGGAATAG

Protein Analysis

513

Amino Acids

55.56

Weight (kDa)

4.6

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WPP PF13943 1 - 78 4.1e-24 WPP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009885)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 794, 901
AclWI GGATC 1 cut(s) 1405
AcoI YGGCCR 2 cut(s) 1140, 1525
AcsI RAATTY 3 cut(s) 805, 1150, 1330
AcuI CTGAAG 5 cut(s) 361, 362, 879, 1382, 1440
AfaI GTAC 1 cut(s) 877
AfiI CCNNNNNNNGG 1 cut(s) 825
AflII CTTAAG 2 cut(s) 437, 1169
AflIII ACRYGT 1 cut(s) 909
AgsI TTSAA 9 cut(s) 334, 451, 506, 550, 994, 1058, 1240, 1375, 1520
AjnI CCWGG 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 1405
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 2 cut(s) 174, 678
AoxI GGCC 4 cut(s) 289, 1140, 1210, 1525
ApeKI GCWGC 8 cut(s) 163, 404, 524, 527, 674, 1097, 1112, 1124
ApoI RAATTY 3 cut(s) 805, 1150, 1330
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 3 cut(s) 175, 176, 1302
AsuHPI GGTGA 2 cut(s) 593, 1169
AvaI CYCGRG 2 cut(s) 174, 678
AvaII GGWCC 1 cut(s) 215
BaeGI GKGCMC 2 cut(s) 610, 1013
BalI TGGCCA 2 cut(s) 1142, 1527
BanII GRGCYC 2 cut(s) 423, 1270
BauI CACGAG 2 cut(s) 823, 1269
BbsI GAAGAC 1 cut(s) 490
BbvCI CCTCAGC 4 cut(s) 69, 312, 321, 774
BbvI GCAGC 8 cut(s) 175, 416, 514, 536, 661, 1084, 1124, 1136
BccI CCATC 3 cut(s) 134, 140, 650
BciT130I CCWGG 1 cut(s) 351
BcnI CCSGG 3 cut(s) 175, 176, 1302
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 2 cut(s) 219, 998
BfmI CTRYAG 3 cut(s) 111, 156, 1107
BfrI CTTAAG 2 cut(s) 437, 1169
BisI GCNGC 8 cut(s) 164, 405, 525, 528, 675, 1098, 1113, 1125
BlsI GCNGC 8 cut(s) 165, 406, 526, 529, 676, 1099, 1114, 1126
Bme1390I CCNGG 4 cut(s) 175, 176, 351, 1302
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 2 cut(s) 174, 678
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 3 cut(s) 216, 348, 835
BmrFI CCNGG 4 cut(s) 175, 176, 351, 1302
BmsI GCATC 1 cut(s) 1357
BpiI GAAGAC 1 cut(s) 490
BplI GAGNNNNNCTC 2 cut(s) 931, 963
BpmI CTGGAG 1 cut(s) 1488
Bpu10I CCTNAGC 4 cut(s) 69, 312, 321, 774
BpuMI CCSGG 3 cut(s) 175, 176, 1302
BsaJI CCNNGG 4 cut(s) 174, 350, 576, 837
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 825
Bse3DI GCAATG 2 cut(s) 1068, 1489
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 4 cut(s) 174, 350, 576, 837
BseGI GGATG 5 cut(s) 100, 151, 1180, 1372, 1495
BseLI CCNNNNNNNGG 1 cut(s) 825
BseMI GCAATG 2 cut(s) 1068, 1489
BseMII CTCAG 8 cut(s) 27, 44, 60, 255, 303, 312, 480, 765
BseRI GAGGAG 3 cut(s) 338, 808, 858
BseSI GKGCMC 2 cut(s) 610, 1013
BseXI GCAGC 8 cut(s) 175, 416, 514, 536, 661, 1084, 1124, 1136
BsgI GTGCAG 2 cut(s) 182, 1035
BshFI GGCC 4 cut(s) 291, 1142, 1212, 1527
BsiHKCI CYCGRG 2 cut(s) 174, 678
BsiSI CCGG 3 cut(s) 175, 488, 1302
BslFI GGGAC 3 cut(s) 228, 883, 917
BslI CCNNNNNNNGG 1 cut(s) 825
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 3 cut(s) 228, 883, 917
BsmI GAATGC 2 cut(s) 185, 1370
BsnI GGCC 4 cut(s) 291, 1142, 1212, 1527
BsoBI CYCGRG 2 cut(s) 174, 678
Bsp1286I GDGCHC 4 cut(s) 423, 610, 1013, 1270
Bsp143I GATC 3 cut(s) 115, 1191, 1397
BspACI CCGC 2 cut(s) 794, 901
BspANI GGCC 4 cut(s) 291, 1142, 1212, 1527
BspCNI CTCAG 8 cut(s) 28, 45, 61, 256, 304, 313, 479, 766
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 3 cut(s) 216, 348, 835
BspMAI CTGCAG 2 cut(s) 115, 160
BspPI GGATC 1 cut(s) 1405
BspQI GCTCTTC 1 cut(s) 1252
BspTI CTTAAG 2 cut(s) 437, 1169
BsrDI GCAATG 2 cut(s) 1068, 1489
BssECI CCNNGG 4 cut(s) 174, 350, 576, 837
BssMI GATC 3 cut(s) 115, 1191, 1397
BssSI CACGAG 2 cut(s) 823, 1269
BssT1I CCWWGG 1 cut(s) 576
Bst2BI CACGAG 2 cut(s) 823, 1269
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 1015
Bst6I CTCTTC 2 cut(s) 57, 1252
BstAFI CTTAAG 2 cut(s) 437, 1169
BstENI CCTNNNNNAGG 1 cut(s) 823
BstF5I GGATG 5 cut(s) 100, 151, 1180, 1372, 1495
BstKTI GATC 3 cut(s) 118, 1194, 1400
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 3 cut(s) 115, 1191, 1397
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 4 cut(s) 173, 174, 349, 1300
BstSFI CTRYAG 3 cut(s) 111, 156, 1107
BstSLI GKGCMC 2 cut(s) 610, 1013
BstV1I GCAGC 8 cut(s) 175, 416, 514, 536, 661, 1084, 1124, 1136
BstV2I GAAGAC 1 cut(s) 490
BstX2I RGATCY 1 cut(s) 1397
BstYI RGATCY 1 cut(s) 1397
BsuRI GGCC 4 cut(s) 291, 1142, 1212, 1527
BtsCI GGATG 5 cut(s) 100, 151, 1180, 1372, 1495
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 4 cut(s) 33, 165, 261, 338
CaiI CAGNNNCTG 1 cut(s) 1049
CciI TCATGA 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 215
Cfr9I CCCGGG 1 cut(s) 174
Csp6I GTAC 1 cut(s) 876
CviAII CATG 3 cut(s) 511, 910, 1214
CviQI GTAC 1 cut(s) 876
DpnI GATC 3 cut(s) 117, 1193, 1399
DpnII GATC 3 cut(s) 115, 1191, 1397
EaeI YGGCCR 2 cut(s) 1140, 1525
Eam1104I CTCTTC 2 cut(s) 57, 1252
EarI CTCTTC 2 cut(s) 57, 1252
Eco130I CCWWGG 1 cut(s) 576
Eco24I GRGCYC 2 cut(s) 423, 1270
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 5 cut(s) 361, 362, 879, 1382, 1440
Eco88I CYCGRG 2 cut(s) 174, 678
EcoNI CCTNNNNNAGG 1 cut(s) 823
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 1372
EcoT38I GRGCYC 2 cut(s) 423, 1270
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 3 cut(s) 514, 913, 1217
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FaqI GGGAC 3 cut(s) 228, 883, 917
FatI CATG 3 cut(s) 510, 909, 1213
FauI CCCGC 1 cut(s) 894
Fnu4HI GCNGC 8 cut(s) 164, 405, 525, 528, 675, 1098, 1113, 1125
FokI GGATG 5 cut(s) 107, 158, 1187, 1379, 1502
FriOI GRGCYC 2 cut(s) 423, 1270
Fsp4HI GCNGC 8 cut(s) 164, 405, 525, 528, 675, 1098, 1113, 1125
FspBI CTAG 2 cut(s) 219, 998
GluI GCNGC 8 cut(s) 164, 405, 525, 528, 675, 1098, 1113, 1125
GsuI CTGGAG 1 cut(s) 1488
HaeIII GGCC 4 cut(s) 291, 1142, 1212, 1527
HapII CCGG 3 cut(s) 175, 488, 1302
Hin1II CATG 3 cut(s) 514, 913, 1217
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 2 cut(s) 388, 713
HinfI GANTC 7 cut(s) 559, 697, 720, 930, 1040, 1463, 1499
HpaII CCGG 3 cut(s) 175, 488, 1302
HphI GGTGA 2 cut(s) 593, 1169
Hpy166II GTNNAC 1 cut(s) 460
Hpy188III TCNNGA 6 cut(s) 503, 511, 547, 613, 1375, 1467
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 8 cut(s) 337, 530, 711, 749, 917, 1172, 1357, 1415
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4IV ACGT 1 cut(s) 1389
HpySE526I ACGT 1 cut(s) 1389
Hsp92II CATG 3 cut(s) 514, 913, 1217
Kzo9I GATC 3 cut(s) 115, 1191, 1397
LguI GCTCTTC 1 cut(s) 1252
LmnI GCTCC 7 cut(s) 195, 325, 346, 401, 821, 839, 1105
Lsp1109I GCAGC 8 cut(s) 175, 416, 514, 536, 661, 1084, 1124, 1136
LweI GCATC 1 cut(s) 1357
MaeI CTAG 2 cut(s) 219, 998
MaeII ACGT 1 cut(s) 1389
MaeIII GTNAC 3 cut(s) 241, 626, 986
MalI GATC 3 cut(s) 117, 1193, 1399
MboI GATC 3 cut(s) 115, 1191, 1397
MboII GAAGA 8 cut(s) 74, 495, 680, 1013, 1269, 1439, 1454, 1460
MfeI CAATTG 3 cut(s) 446, 762, 1020
MflI RGATCY 1 cut(s) 1397
MhlI GDGCHC 4 cut(s) 423, 610, 1013, 1270
MlsI TGGCCA 2 cut(s) 1142, 1527
MluCI AATT 9 cut(s) 87, 446, 762, 805, 964, 1020, 1150, 1330, 1493
MluNI TGGCCA 2 cut(s) 1142, 1527
MlyI GAGTC 2 cut(s) 729, 939
MmeI TCCRAC 1 cut(s) 591
Mox20I TGGCCA 2 cut(s) 1142, 1527
Mph1103I ATGCAT 1 cut(s) 1372
MscI TGGCCA 2 cut(s) 1142, 1527
MseI TTAA 5 cut(s) 15, 207, 438, 1170, 1308
Msp20I TGGCCA 2 cut(s) 1142, 1527
MspA1I CMGCKG 1 cut(s) 527
MspCI CTTAAG 2 cut(s) 437, 1169
MspI CCGG 3 cut(s) 175, 488, 1302
MspR9I CCNGG 4 cut(s) 175, 176, 351, 1302
MunI CAATTG 3 cut(s) 446, 762, 1020
Mva1269I GAATGC 2 cut(s) 185, 1370
MvaI CCWGG 1 cut(s) 351
NciI CCSGG 3 cut(s) 175, 176, 1302
NdeII GATC 3 cut(s) 115, 1191, 1397
NlaIII CATG 3 cut(s) 514, 913, 1217
NlaIV GGNNCC 3 cut(s) 216, 348, 835
NmeAIII GCCGAG 2 cut(s) 442, 1243
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 1372
NspI RCATGY 1 cut(s) 913
PaeR7I CTCGAG 1 cut(s) 678
PagI TCATGA 1 cut(s) 510
PciI ACATGT 1 cut(s) 909
PciSI GCTCTTC 1 cut(s) 1252
PctI GAATGC 2 cut(s) 185, 1370
PfeI GAWTC 5 cut(s) 559, 697, 1040, 1463, 1499
PkrI GCNGC 8 cut(s) 165, 406, 526, 529, 676, 1099, 1114, 1126
PleI GAGTC 2 cut(s) 728, 938
PpsI GAGTC 2 cut(s) 728, 938
PpuMI RGGWCCY 1 cut(s) 215
PscI ACATGT 1 cut(s) 909
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 3 cut(s) 216, 348, 835
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PspXI VCTCGAGB 1 cut(s) 678
PstI CTGCAG 2 cut(s) 115, 160
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 1 cut(s) 1397
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 1 cut(s) 877
RsaNI GTAC 1 cut(s) 876
SapI GCTCTTC 1 cut(s) 1252
SaqAI TTAA 5 cut(s) 15, 207, 438, 1170, 1308
SatI GCNGC 8 cut(s) 164, 405, 525, 528, 675, 1098, 1113, 1125
Sau3AI GATC 3 cut(s) 115, 1191, 1397
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 2 cut(s) 729, 939
ScrFI CCNGG 4 cut(s) 175, 176, 351, 1302
SduI GDGCHC 4 cut(s) 423, 610, 1013, 1270
SfaNI GCATC 1 cut(s) 1357
SfcI CTRYAG 3 cut(s) 111, 156, 1107
Sfr274I CTCGAG 1 cut(s) 678
SinI GGWCC 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 678
SmaI CCCGGG 1 cut(s) 176
SmlI CTYRAG 3 cut(s) 437, 678, 1169
SmoI CTYRAG 3 cut(s) 437, 678, 1169
Sse9I AATT 9 cut(s) 87, 446, 762, 805, 964, 1020, 1150, 1330, 1493
SsiI CCGC 2 cut(s) 794, 901
SspMI CTAG 2 cut(s) 219, 998
StyD4I CCNGG 4 cut(s) 173, 174, 349, 1300
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 1015
TaiI ACGT 1 cut(s) 1392
TaqI TCGA 2 cut(s) 284, 679
TasI AATT 9 cut(s) 87, 446, 762, 805, 964, 1020, 1150, 1330, 1493
TfiI GAWTC 5 cut(s) 559, 697, 1040, 1463, 1499
Tru1I TTAA 5 cut(s) 15, 207, 438, 1170, 1308
Tru9I TTAA 5 cut(s) 15, 207, 438, 1170, 1308
TscAI CASTG 4 cut(s) 40, 165, 268, 345
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 8 cut(s) 163, 404, 524, 527, 674, 1097, 1112, 1124
Tsp45I GTSAC 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 800
TspMI CCCGGG 1 cut(s) 174
TspRI CASTG 4 cut(s) 40, 165, 268, 345
Vha464I CTTAAG 2 cut(s) 437, 1169
VpaK11BI GGWCC 1 cut(s) 215
XagI CCTNNNNNAGG 1 cut(s) 823
XapI RAATTY 3 cut(s) 805, 1150, 1330
XceI RCATGY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 2 cut(s) 574, 1150
XhoI CTCGAG 1 cut(s) 678
XmaI CCCGGG 1 cut(s) 174
XspI CTAG 2 cut(s) 219, 998
Zsp2I ATGCAT 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.