FvH4_4g14980

RAN GTPase-activating protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
18569722 .. 18573878
4157 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14980.t1

Sequence Viewer

Length: 1617 bp
ATGGACACCACATCTCTGGATGCAAAACGCCGGCCATTTTCACTCAAAATGTGGCCTCCAAGCCAAAATACGAGGAGAGTGCTTGTGGAGCGGATGACAAACAATCTCAGCACTAAATCCATTTTGACTGAAAAGTATGGCACTCTGAGTAAGGAGGAGGCTGAGGAAAATGCAAAACAGATTGAGGATGTGGCTTTTGTCGCTGCAGACCAGAAGTATGAAAAGGAACCAGATGGCGATGGAAGTTCTGCAGTGCACTGTTATGCTCGGGAATGTAGTAAGATGCTGTTGGAAGTTCTCAAAAAGGGATCTAGTAGCAAGGAGAGCAAAGTCGTATCTGACTCTACACCTAAACAAACTTTGTTTGATATATCTAAAGGCACACGGGCTTTTATTGAAGCTGAGGAAGCTGAGAAACTCTTAAGCCCTTTGAAGGAACCGGCGAATGCCTACACTAAAATATGCTTCAGCAATAGAAGCTTTGGTTTAGGAGCAGCCCGTGTCGCTGAGCCCATTTTGATTTCCCTCAAGAATCAGTTGAAAGAAGTTGACTTATCAGATTTTATAGCAGGTAGACCTGAGGCTGAAGCTCTTGAAGTCATCAATATATTTGCAGCTGCCTTGGAAGGTAGTGAATTGAGATTTCTGGATCTCTCAAACAATGCCTTGGGCGAGAAAGGTGTTAGGGCGTTTGGAGCACTCCTGAAATCACAAAGTTGCTTGGAGGAACTCTATTTGATGAATGATGGCATTTCAGAAGAAGCTGCTCAAGCAGTTCACAAGTTGATTCCTTCTACGGATAAGCTTAAAATCCTTCATTTTCATAATAACATGACAGGAAATGAGGGGGCATTTGCTATTTCTAAGATTGTGAAGCATTCTTCCCTTCTGGAGGATTTCCGTTGTTCCTCCACGAGGGTAGGCTCTGAGGGAGGAGTTGCCTTATGTGAGGCACTGGGGACTTGTACCCACTTAAAGAAGCTGGACTTGCGGGACAACATGTTTGGCGTAGAAGGTGGAATTGCATTGAGTAGAGCTCTTTCCAAGCATGAACATTTGAAAGAGATTTACCTCAGTTACCTGAACCTTGAAGATGAGGGTGTAGTTGCACTAGCCAATGTTCTTAAGGAATCAGCTCCTTCTCTTGAAGTCTTGGACATAGCTGGCAATGACATTACAGCTAAAGCTGCTCCTGCTCTGGCAGCATGTATAGGAGCAAAGACACTTCTCACTCAGCTGAATTTGGGTGAGAATGAACTCAAGGATGAAGGTACTATTCAGATCAGCCAGGTGTTAGAGGGTCTTTCCCAGTTGAAAGAAGTTGACTTGAACACCAACTCAATAAGAAGAGCTGGAGCTCGAGTGTTGGCACAGGCTGTGGTTCAGAAACCTGATTTTAAGTTGTTGAATATCAATGGAAATTTCATATCTGATGATGGCATAGATGAGGTGAAGGCTTTATTCAAGAAATCTCCTCACATGCTTGGCTCTTTGGATGAGAATGACCCTGAAGGAGAGGACGATGCTGAAGATGACGAAGAATCTGGAGATGATGAAGGTAATGAGGACGTGTTAGAATCAAAGCTGAAGAATCTTGAAGTTGACCAAGATGAATAG

Protein Analysis

539

Amino Acids

58.65

Weight (kDa)

4.82

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WPP PF13943 14 - 109 3.8e-36 WPP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009885)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 574
AciI CCGC 2 cut(s) 91, 991
AclWI GGATC 2 cut(s) 316, 657
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 2 cut(s) 1240, 1420
AcuI CTGAAG 5 cut(s) 451, 606, 1530, 1548, 1607
AfaI GTAC 2 cut(s) 967, 1273
AfiI CCNNNNNNNGG 3 cut(s) 433, 892, 915
AflII CTTAAG 2 cut(s) 421, 1124
AflIII ACRYGT 2 cut(s) 999, 1569
AjiI CACGTC 1 cut(s) 1570
AjnI CCWGG 1 cut(s) 1287
Alw21I GWGCWC 4 cut(s) 258, 700, 1039, 1360
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 2 cut(s) 316, 657
Ama87I CYCGRG 2 cut(s) 267, 1359
AoxI GGCC 2 cut(s) 32, 53
ApaLI GTGCAC 1 cut(s) 254
ApeKI GCWGC 7 cut(s) 203, 494, 614, 617, 764, 1187, 1202
ApoI RAATTY 2 cut(s) 1240, 1420
ArsI GACNNNNNNTTYG 2 cut(s) 986, 1018
AsuHPI GGTGA 2 cut(s) 1259, 1462
AvaI CYCGRG 2 cut(s) 267, 1359
AxyI CCTNAGG 1 cut(s) 579
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 3 cut(s) 513, 1039, 1360
BauI CACGAG 1 cut(s) 913
Bbv12I GWGCWC 4 cut(s) 258, 700, 1039, 1360
BbvCI CCTCAGC 2 cut(s) 162, 402
BbvI GCAGC 7 cut(s) 190, 506, 604, 626, 751, 1174, 1214
BccI CCATC 4 cut(s) 227, 233, 740, 1430
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BciT130I CCWGG 1 cut(s) 1289
BfaI CTAG 2 cut(s) 312, 1112
BfmI CTRYAG 2 cut(s) 204, 249
BfrI CTTAAG 2 cut(s) 421, 1124
BfuAI ACCTGC 1 cut(s) 560
BisI GCNGC 7 cut(s) 204, 495, 615, 618, 765, 1188, 1203
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 7 cut(s) 205, 496, 616, 619, 766, 1189, 1204
Bme1390I CCNGG 1 cut(s) 1289
BmeT110I CYCGRG 2 cut(s) 267, 1359
BmgBI CACGTC 1 cut(s) 1570
BmiI GGNNCC 2 cut(s) 228, 438
BmrFI CCNGG 1 cut(s) 1289
BmrI ACTGGG 2 cut(s) 965, 1303
BmsI GCATC 3 cut(s) 10, 273, 1513
BmuI ACTGGG 2 cut(s) 965, 1303
BplI GAGNNNNNCTC 2 cut(s) 1021, 1053
BpmI CTGGAG 3 cut(s) 911, 1374, 1566
Bpu10I CCTNAGC 2 cut(s) 162, 402
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 3 cut(s) 512, 753, 1244
BsaJI CCNNGG 2 cut(s) 621, 666
BsaXI ACNNNNNCTCC 2 cut(s) 1347, 1377
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 892, 915
Bse118I RCCGGY 2 cut(s) 30, 439
Bse1I ACTGG 2 cut(s) 960, 1309
Bse21I CCTNAGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 1174
BseBI CCWGG 1 cut(s) 1289
BseDI CCNNGG 2 cut(s) 621, 666
BseGI GGATG 5 cut(s) 25, 99, 193, 1270, 1501
BseLI CCNNNNNNNGG 3 cut(s) 433, 892, 915
BseMI GCAATG 1 cut(s) 1174
BseNI ACTGG 2 cut(s) 960, 1309
BseRI GAGGAG 4 cut(s) 88, 170, 948, 1464
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 7 cut(s) 190, 506, 604, 626, 751, 1174, 1214
BshFI GGCC 2 cut(s) 34, 55
BsiHKAI GWGCWC 4 cut(s) 258, 700, 1039, 1360
BsiHKCI CYCGRG 2 cut(s) 267, 1359
BsiSI CCGG 2 cut(s) 31, 440
BslFI GGGAC 2 cut(s) 973, 1007
BslI CCNNNNNNNGG 3 cut(s) 433, 892, 915
BsmFI GGGAC 2 cut(s) 973, 1007
BsmI GAATGC 2 cut(s) 451, 877
BsnI GGCC 2 cut(s) 34, 55
BsoBI CYCGRG 2 cut(s) 267, 1359
Bsp1286I GDGCHC 5 cut(s) 258, 513, 700, 1039, 1360
Bsp143I GATC 3 cut(s) 308, 649, 1281
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 2 cut(s) 91, 991
BspANI GGCC 2 cut(s) 34, 55
BspLI GGNNCC 2 cut(s) 228, 438
BspMAI CTGCAG 2 cut(s) 208, 253
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 2 cut(s) 316, 657
BspQI GCTCTTC 1 cut(s) 1342
BspTI CTTAAG 2 cut(s) 421, 1124
BsrBI CCGCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 1174
BsrFI RCCGGY 2 cut(s) 30, 439
BsrI ACTGG 2 cut(s) 960, 1309
BssAI RCCGGY 2 cut(s) 30, 439
BssECI CCNNGG 2 cut(s) 621, 666
BssMI GATC 3 cut(s) 308, 649, 1281
BssSI CACGAG 1 cut(s) 913
BssT1I CCWWGG 2 cut(s) 621, 666
Bst2BI CACGAG 1 cut(s) 913
Bst2UI CCWGG 1 cut(s) 1289
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 1342
BstAFI CTTAAG 2 cut(s) 421, 1124
BstC8I GCNNGC 2 cut(s) 32, 1165
BstENI CCTNNNNNAGG 2 cut(s) 890, 913
BstF5I GGATG 5 cut(s) 25, 99, 193, 1270, 1501
BstKTI GATC 3 cut(s) 311, 652, 1284
BstMBI GATC 3 cut(s) 308, 649, 1281
BstNI CCWGG 1 cut(s) 1289
BstNSI RCATGY 3 cut(s) 1003, 1209, 1483
BstSCI CCNGG 1 cut(s) 1287
BstSFI CTRYAG 2 cut(s) 204, 249
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 7 cut(s) 190, 506, 604, 626, 751, 1174, 1214
BstX2I RGATCY 2 cut(s) 308, 649
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 308, 649
Bsu36I CCTNAGG 1 cut(s) 579
BsuRI GGCC 2 cut(s) 34, 55
BtgZI GCGATG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 1570
BtsCI GGATG 5 cut(s) 25, 99, 193, 1270, 1501
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 3 cut(s) 256, 258, 953
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 2 cut(s) 32, 1165
Cfr10I RCCGGY 2 cut(s) 30, 439
Csp6I GTAC 2 cut(s) 966, 1272
CviAII CATG 5 cut(s) 832, 1000, 1049, 1206, 1480
CviQI GTAC 2 cut(s) 966, 1272
DpnI GATC 3 cut(s) 310, 651, 1283
DpnII GATC 3 cut(s) 308, 649, 1281
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 1342
EarI CTCTTC 1 cut(s) 1342
Ecl136II GAGCTC 2 cut(s) 1037, 1358
Eco130I CCWWGG 2 cut(s) 621, 666
Eco24I GRGCYC 3 cut(s) 513, 1039, 1360
Eco53kI GAGCTC 2 cut(s) 1037, 1358
Eco57I CTGAAG 5 cut(s) 451, 606, 1530, 1548, 1607
Eco81I CCTNAGG 1 cut(s) 579
Eco88I CYCGRG 2 cut(s) 267, 1359
EcoICRI GAGCTC 2 cut(s) 1037, 1358
EcoNI CCTNNNNNAGG 2 cut(s) 890, 913
EcoRII CCWGG 1 cut(s) 1287
EcoT14I CCWWGG 2 cut(s) 621, 666
EcoT38I GRGCYC 3 cut(s) 513, 1039, 1360
ErhI CCWWGG 2 cut(s) 621, 666
FaeI CATG 5 cut(s) 835, 1003, 1052, 1209, 1483
FalI AAGNNNNNCTT 2 cut(s) 971, 1003
FaqI GGGAC 2 cut(s) 973, 1007
FatI CATG 5 cut(s) 831, 999, 1048, 1205, 1479
FauI CCCGC 1 cut(s) 984
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 7 cut(s) 204, 495, 615, 618, 765, 1188, 1203
FokI GGATG 5 cut(s) 32, 106, 200, 1277, 1508
FriOI GRGCYC 3 cut(s) 513, 1039, 1360
Fsp4HI GCNGC 7 cut(s) 204, 495, 615, 618, 765, 1188, 1203
FspBI CTAG 2 cut(s) 312, 1112
GluI GCNGC 7 cut(s) 204, 495, 615, 618, 765, 1188, 1203
GsuI CTGGAG 3 cut(s) 911, 1374, 1566
HaeIII GGCC 2 cut(s) 34, 55
HapII CCGG 2 cut(s) 31, 440
Hin1II CATG 5 cut(s) 835, 1003, 1052, 1209, 1483
HincII GTYRAC 3 cut(s) 550, 1324, 1603
HindII GTYRAC 3 cut(s) 550, 1324, 1603
HindIII AAGCTT 2 cut(s) 478, 803
HinfI GANTC 7 cut(s) 341, 532, 787, 1130, 1541, 1577, 1591
HpaII CCGG 2 cut(s) 31, 440
HphI GGTGA 2 cut(s) 1259, 1462
Hpy166II GTNNAC 6 cut(s) 256, 550, 575, 778, 1324, 1603
Hpy188I TCNGA 8 cut(s) 147, 340, 559, 757, 928, 1281, 1386, 1432
Hpy8I GTNNAC 6 cut(s) 256, 550, 575, 778, 1324, 1603
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 1569
HpyCH4V TGCA 8 cut(s) 23, 173, 206, 251, 256, 614, 1025, 1109
HpySE526I ACGT 1 cut(s) 1569
Hsp92II CATG 5 cut(s) 835, 1003, 1052, 1209, 1483
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
Kzo9I GATC 3 cut(s) 308, 649, 1281
LguI GCTCTTC 1 cut(s) 1342
LmnI GCTCC 7 cut(s) 88, 491, 695, 1141, 1195, 1214, 1355
Lsp1109I GCAGC 7 cut(s) 190, 506, 604, 626, 751, 1174, 1214
LweI GCATC 3 cut(s) 10, 273, 1513
MaeI CTAG 2 cut(s) 312, 1112
MaeII ACGT 1 cut(s) 1569
MaeIII GTNAC 1 cut(s) 1076
MalI GATC 3 cut(s) 310, 651, 1283
MbiI CCGCTC 1 cut(s) 91
MboI GATC 3 cut(s) 308, 649, 1281
MboII GAAGA 7 cut(s) 770, 873, 1103, 1359, 1541, 1550, 1600
MflI RGATCY 2 cut(s) 308, 649
MhlI GDGCHC 5 cut(s) 258, 513, 700, 1039, 1360
MluCI AATT 4 cut(s) 635, 1020, 1240, 1420
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 270
MroNI GCCGGC 1 cut(s) 30
MseI TTAA 5 cut(s) 422, 807, 974, 1125, 1398
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 617, 1237
MspCI CTTAAG 2 cut(s) 421, 1124
MspI CCGG 2 cut(s) 31, 440
MspR9I CCNGG 1 cut(s) 1289
Mva1269I GAATGC 2 cut(s) 451, 877
MvaI CCWGG 1 cut(s) 1289
NaeI GCCGGC 1 cut(s) 32
NdeII GATC 3 cut(s) 308, 649, 1281
NgoMIV GCCGGC 1 cut(s) 30
NlaIII CATG 5 cut(s) 835, 1003, 1052, 1209, 1483
NlaIV GGNNCC 2 cut(s) 228, 438
NspI RCATGY 3 cut(s) 1003, 1209, 1483
PaeR7I CTCGAG 1 cut(s) 1359
PciI ACATGT 1 cut(s) 999
PciSI GCTCTTC 1 cut(s) 1342
PctI GAATGC 2 cut(s) 451, 877
PdiI GCCGGC 1 cut(s) 32
PfeI GAWTC 6 cut(s) 532, 787, 1130, 1541, 1577, 1591
PkrI GCNGC 7 cut(s) 205, 496, 616, 619, 766, 1189, 1204
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PscI ACATGT 1 cut(s) 999
Psp124BI GAGCTC 2 cut(s) 1039, 1360
Psp6I CCWGG 1 cut(s) 1287
PspGI CCWGG 1 cut(s) 1287
PspN4I GGNNCC 2 cut(s) 228, 438
PspXI VCTCGAGB 1 cut(s) 1359
PstI CTGCAG 2 cut(s) 208, 253
PsuI RGATCY 2 cut(s) 308, 649
PvuII CAGCTG 2 cut(s) 617, 1237
RsaI GTAC 2 cut(s) 967, 1273
RsaNI GTAC 2 cut(s) 966, 1272
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 2 cut(s) 1039, 1360
SapI GCTCTTC 1 cut(s) 1342
SaqAI TTAA 5 cut(s) 422, 807, 974, 1125, 1398
SatI GCNGC 7 cut(s) 204, 495, 615, 618, 765, 1188, 1203
Sau3AI GATC 3 cut(s) 308, 649, 1281
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 1289
SduI GDGCHC 5 cut(s) 258, 513, 700, 1039, 1360
SfaNI GCATC 3 cut(s) 10, 273, 1513
SfcI CTRYAG 2 cut(s) 204, 249
Sfr274I CTCGAG 1 cut(s) 1359
SlaI CTCGAG 1 cut(s) 1359
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 6 cut(s) 421, 527, 768, 1124, 1259, 1359
SmoI CTYRAG 6 cut(s) 421, 527, 768, 1124, 1259, 1359
Sse9I AATT 4 cut(s) 635, 1020, 1240, 1420
SsiI CCGC 2 cut(s) 91, 991
SspMI CTAG 2 cut(s) 312, 1112
SstI GAGCTC 2 cut(s) 1039, 1360
StyD4I CCNGG 1 cut(s) 1287
StyI CCWWGG 2 cut(s) 621, 666
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 1572
TaqI TCGA 1 cut(s) 1360
TasI AATT 4 cut(s) 635, 1020, 1240, 1420
TfiI GAWTC 6 cut(s) 532, 787, 1130, 1541, 1577, 1591
Tru1I TTAA 5 cut(s) 422, 807, 974, 1125, 1398
Tru9I TTAA 5 cut(s) 422, 807, 974, 1125, 1398
TscAI CASTG 3 cut(s) 258, 263, 960
TseI GCWGC 7 cut(s) 203, 494, 614, 617, 764, 1187, 1202
TspDTI ATGAA 9 cut(s) 234, 755, 806, 812, 1065, 1269, 1281, 1414, 1569
TspGWI ACGGA 2 cut(s) 812, 890
TspRI CASTG 3 cut(s) 258, 263, 960
Vha464I CTTAAG 2 cut(s) 421, 1124
VneI GTGCAC 1 cut(s) 254
XagI CCTNNNNNAGG 2 cut(s) 890, 913
XapI RAATTY 2 cut(s) 1240, 1420
XceI RCATGY 3 cut(s) 1003, 1209, 1483
XhoI CTCGAG 1 cut(s) 1359
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 2 cut(s) 312, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.