AT3G06020

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014046
Physical Location & Seq
Forward (+)
1813164 .. 1814363
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06020.1

Sequence Viewer

Length: 903 bp
ATGGCAACTGTTGTATATCAATCTTATTTTGAGTCTCAACACTTTGAGCCAAGAGCTCTCAGACTCAGACTCTCTTCTCATACAAATCCTCAACTATCCACACCTCTCAAATCCCATTTCCAAAATTCTTCCATTGCTCCACAAGACAACCCTATTACCATTAATGCAGCCTCCTTGCCCTCATCAAGTCCCAACCCGAGCTCTAACTCGGACACCAACTCGGGAAGTTGGAGCTTCCTCGAGTCCCTTTCAAACTCGAGCTCTAATGATAAAGAGAAGAAGACATTACCACTCTTTCAATCTCCATCCTCTCGTAGAACTCTCAGCGACGAGAGCTTAGCATTGTGCACTGAGAGCCTTGGGAGCGAGACGGGCTCTGATATCATTCATGAAGATATGTTCTCGATTTCATCTGAATTACAAACTATGGAAACTAGAACCACGTCGACAACATCGAATCCATCAAGACAAGATAGGAAGAGGAATACAATGGCTTCACTTCCACCTCCTTTGACAAGTATGATAGGTTTTGATTGCATTGAAGTCAAGTCGCACCGTGAAAACGGAAGATTAGTAATGATGGCCACGAGACCTCCTCCGCGTAATCGTTGCCTTCAGGACCGAAGCAATGGCTGTGTCAGACTCGCTATCTTGATTGATTCTGATGACCACATAGAGACAGAGACCAAAGAAGAAAAAGAAGAAGAAGAGGAAGAAACAATCGAGACCGTGAGAGATAACGAAGAAGAGATTCCAGAATACAAGGAAGAAGAAGAAGAAAAAGAAGAAGAAATCAAAGTAAAGGGTGTTGAGAAAGTTCAAAGATCAAGAAGATGTATTGAAGGAGATCGAGAAAACAGAGGATTTCTAAATTGGGAATCTTTATGTGTTGCCACTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0010075 GO:0032501 GO:0032502 GO:0040008 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

300

Amino Acids

33.89

Weight (kDa)

4.88

Isoelectric Point (pI)

75.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 166 - 216 6.1e-12 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06020 AT5G19260
fragaria_vesca FvH4_4g14940
malus_domestica MD13G1186600.v1.1 MD16G1187300.v1.1
prunus_persica Prupe.1G154300_v2.0.a1
pyrus_communis pycom13g16150
rosa_chinensis RchiOBHm_Chr4g0417161
rosa_laevigata RLG00000007925
rosa_multiflora Rmu_sc0000646.1_g000019
rosa_roxburghii Rroxscaffold_5G00360980
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG209100 Rh4BG206000 Rh4CG220100 Rh4DG206800
rosa_wichuraiana Rw4G017710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 446
AccII CGCG 1 cut(s) 601
AciI CCGC 1 cut(s) 599
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 599
AgsI TTSAA 5 cut(s) 252, 299, 542, 821, 842
AjiI CACGTC 1 cut(s) 444
AluBI AGCT 5 cut(s) 56, 201, 234, 261, 336
AluI AGCT 5 cut(s) 56, 201, 234, 261, 336
Alw21I GWGCWC 4 cut(s) 58, 203, 263, 350
Alw26I GTCTC 6 cut(s) 39, 362, 583, 671, 677, 719
Alw44I GTGCAC 1 cut(s) 346
Ama87I CYCGRG 4 cut(s) 196, 220, 239, 256
AoxI GGCC 1 cut(s) 582
ApaLI GTGCAC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 124
AseI ATTAAT 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 750
AspS9I GGNCC 1 cut(s) 619
AvaI CYCGRG 4 cut(s) 196, 220, 239, 256
AvaII GGWCC 1 cut(s) 619
BaeGI GKGCMC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 4 cut(s) 58, 203, 263, 377
BauI CACGAG 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 4 cut(s) 58, 203, 263, 350
BbvI GCAGC 1 cut(s) 179
BccI CCATC 3 cut(s) 313, 469, 574
BcoDI GTCTC 6 cut(s) 39, 362, 583, 671, 677, 719
BfaI CTAG 1 cut(s) 435
BisI GCNGC 1 cut(s) 168
BlpI GCTNAGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 4 cut(s) 196, 220, 239, 256
BmgBI CACGTC 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 287
BplI GAGNNNNNCTC 4 cut(s) 359, 391, 580, 612
Bpu1102I GCTNAGC 1 cut(s) 337
BsaI GGTCTC 3 cut(s) 583, 677, 719
BsaJI CCNNGG 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bse3DI GCAATG 2 cut(s) 132, 634
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 305
BseMI GCAATG 2 cut(s) 132, 634
BseMII CTCAG 4 cut(s) 73, 79, 337, 342
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 1 cut(s) 584
BsiHKAI GWGCWC 4 cut(s) 58, 203, 263, 350
BsiHKCI CYCGRG 4 cut(s) 196, 220, 239, 256
BslFI GGGAC 2 cut(s) 174, 229
BsmAI GTCTC 6 cut(s) 39, 362, 583, 671, 677, 719
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 174, 229
BsnI GGCC 1 cut(s) 584
Bso31I GGTCTC 3 cut(s) 583, 677, 719
BsoBI CYCGRG 4 cut(s) 196, 220, 239, 256
Bsp1286I GDGCHC 5 cut(s) 58, 203, 263, 350, 377
Bsp143I GATC 2 cut(s) 824, 847
Bsp1720I GCTNAGC 1 cut(s) 337
BspACI CCGC 1 cut(s) 599
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 4 cut(s) 72, 78, 336, 343
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 388
BspTNI GGTCTC 3 cut(s) 583, 677, 719
BsrDI GCAATG 2 cut(s) 132, 634
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 2 cut(s) 824, 847
BssSI CACGAG 1 cut(s) 586
BssT1I CCWWGG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 586
Bst4CI ACNGT 3 cut(s) 10, 557, 730
Bst6I CTCTTC 4 cut(s) 79, 473, 702, 741
BstDEI CTNAG 5 cut(s) 59, 65, 323, 337, 351
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 601
BstKTI GATC 2 cut(s) 827, 850
BstMAI GTCTC 6 cut(s) 39, 362, 583, 671, 677, 719
BstMBI GATC 2 cut(s) 824, 847
BstMWI GCNNNNNNNGC 4 cut(s) 333, 354, 363, 372
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 584
BtrI CACGTC 1 cut(s) 444
BtsCI GGATG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 348
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 619
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 1 cut(s) 389
DdeI CTNAG 5 cut(s) 59, 65, 323, 337, 351
DpnI GATC 2 cut(s) 826, 849
DpnII GATC 2 cut(s) 824, 847
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 4 cut(s) 79, 473, 702, 741
EarI CTCTTC 4 cut(s) 79, 473, 702, 741
Ecl136II GAGCTC 3 cut(s) 56, 201, 261
Eco130I CCWWGG 1 cut(s) 358
Eco24I GRGCYC 4 cut(s) 58, 203, 263, 377
Eco31I GGTCTC 3 cut(s) 583, 677, 719
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 619
Eco53kI GAGCTC 3 cut(s) 56, 201, 261
Eco57I CTGAAG 1 cut(s) 599
Eco88I CYCGRG 4 cut(s) 196, 220, 239, 256
EcoICRI GAGCTC 3 cut(s) 56, 201, 261
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 358
EcoT38I GRGCYC 4 cut(s) 58, 203, 263, 377
ErhI CCWWGG 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 1 cut(s) 392
FaiI YATR 8 cut(s) 16, 81, 390, 398, 428, 521, 674, 886
FaqI GGGAC 2 cut(s) 174, 229
FatI CATG 1 cut(s) 388
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 4 cut(s) 58, 203, 263, 377
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 435
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 584
Hin1II CATG 1 cut(s) 392
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 9 cut(s) 32, 63, 69, 242, 457, 642, 659, 751, 878
Hpy166II GTNNAC 2 cut(s) 348, 447
Hpy188I TCNGA 7 cut(s) 62, 68, 211, 379, 415, 641, 664
Hpy8I GTNNAC 2 cut(s) 348, 447
Hpy99I CGWCG 2 cut(s) 332, 448
HpyAV CCTTC 2 cut(s) 623, 836
HpyCH4III ACNGT 3 cut(s) 10, 557, 730
HpyCH4IV ACGT 1 cut(s) 443
HpyCH4V TGCA 3 cut(s) 167, 348, 537
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 354, 363, 372
HpyF3I CTNAG 5 cut(s) 59, 65, 323, 337, 351
HpySE526I ACGT 1 cut(s) 443
Hsp92II CATG 1 cut(s) 392
Kzo9I GATC 2 cut(s) 824, 847
LmnI GCTCC 3 cut(s) 142, 231, 363
LpnPI CCDG 2 cut(s) 602, 768
Lsp1109I GCAGC 1 cut(s) 179
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 443
MalI GATC 2 cut(s) 826, 849
MboI GATC 2 cut(s) 824, 847
MhlI GDGCHC 5 cut(s) 58, 203, 263, 350, 377
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 3 cut(s) 124, 416, 871
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 5 cut(s) 41, 57, 63, 251, 636
MmeI TCCRAC 1 cut(s) 209
Mox20I TGGCCA 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 750
MscI TGGCCA 1 cut(s) 584
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 584
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 4 cut(s) 333, 354, 363, 372
NdeII GATC 2 cut(s) 824, 847
NlaIII CATG 1 cut(s) 392
PaeR7I CTCGAG 2 cut(s) 239, 256
PagI TCATGA 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 4 cut(s) 457, 659, 751, 878
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 5 cut(s) 40, 57, 63, 250, 636
PpsI GAGTC 5 cut(s) 40, 57, 63, 250, 636
PshBI ATTAAT 1 cut(s) 162
Psp124BI GAGCTC 3 cut(s) 58, 203, 263
PspPI GGNCC 1 cut(s) 619
PspXI VCTCGAGB 2 cut(s) 239, 256
SacI GAGCTC 3 cut(s) 58, 203, 263
SalI GTCGAC 1 cut(s) 445
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 824, 847
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 5 cut(s) 41, 57, 63, 251, 636
SduI GDGCHC 5 cut(s) 58, 203, 263, 350, 377
Sfr274I CTCGAG 2 cut(s) 239, 256
SinI GGWCC 1 cut(s) 619
SlaI CTCGAG 2 cut(s) 239, 256
SmlI CTYRAG 2 cut(s) 239, 256
SmoI CTYRAG 2 cut(s) 239, 256
Sse9I AATT 3 cut(s) 124, 416, 871
SsiI CCGC 1 cut(s) 599
SspMI CTAG 1 cut(s) 435
SstI GAGCTC 3 cut(s) 58, 203, 263
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 3 cut(s) 10, 557, 730
TaiI ACGT 1 cut(s) 446
TaqI TCGA 7 cut(s) 240, 257, 404, 446, 455, 723, 850
TaqII GACCGA 1 cut(s) 636
TasI AATT 3 cut(s) 124, 416, 871
TfiI GAWTC 4 cut(s) 457, 659, 751, 878
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 355
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 377, 399, 405
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 1 cut(s) 355
VneI GTGCAC 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 619
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 1 cut(s) 124
XhoI CTCGAG 2 cut(s) 239, 256
XmiI GTMKAC 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.