AT5G19260

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014046
Physical Location & Seq
Reverse (-)
6479398 .. 6480729
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19260.1

Sequence Viewer

Length: 867 bp
ATGGGAACTGTTGTGTATCAACAAGGGTTTCAGTCTCAGCTTAATGAGCCTAGGGCTTTAAGGCTTAGGCTATCTTCACCAAATCCTCACTTTTCTCAACCATTTGGTTTAGCTCTCAAATCTCATTTACTTGACTCCTCTCATGCAGAGGACACCCGAAACCGTAACGATGACAAAGCTGCTGCTTCCCCGGTCTCTGACTCGAGTGGCTGGAGCTCTCTCCAGTCCCTATCCTCTGGCTCCTCCTCCTCCACAAAGACGACGACAAGCTCTGAGAAAGAGAGTAGTTACTATGTTCAACGTCCGTCTTCTTGTAGAGCTCTAAGCGACCAGAGCTTAGCATTGTGCACTGAGAATCTCGGAAGCGAATCTGGTTCTGATGTTACAGATATTGATGAGTTGTTCTCGCTTGACGTGCAAACCAAGAATCTCGGGGAAACAACAACGGAGACAAGAACGTTAAAAAGTAGGAAAAGGAGTGTGAGCCCTAGTGATCTCCCACCTCCTTTGACCACTATGAGAGGATTTCAATGCATTCAAATGAGACCACACCGTGAAAACGGAAGATTGGTCATGACCGCCACAAACGCGCCTCCTCGTAACGGATGCTTTCAAGCTGACCGTAGCAATGGTCGTCTCCGTCTCTCTATCTTGAAAGACTCCAATGAGTTTGTAGAGAACGAAGAAGAGACTATTGAGCCTGAAGAAACCGAAGAATACGAGGAGGAGGAGGAAGAGGAAGAAGATGAAGATGAAGATGAAGTGATGGGCATTGAGAATGTTCAAGTATCAAGAAGATGTGTTCAAGGCGATCGGGAAAACAGGGGATTGCTAAATTGGGAATCTTTCTGCGTTGCTACTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0010075 GO:0032501 GO:0032502 GO:0040008 GO:0048507 GO:0048509 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

288

Amino Acids

32.1

Weight (kDa)

4.63

Isoelectric Point (pI)

69.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 166 - 216 2.6e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06020 AT5G19260
fragaria_vesca FvH4_4g14940
malus_domestica MD13G1186600.v1.1 MD16G1187300.v1.1
prunus_persica Prupe.1G154300_v2.0.a1
pyrus_communis pycom13g16150
rosa_chinensis RchiOBHm_Chr4g0417161
rosa_laevigata RLG00000007925
rosa_multiflora Rmu_sc0000646.1_g000019
rosa_roxburghii Rroxscaffold_5G00360980
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG209100 Rh4BG206000 Rh4CG220100 Rh4DG206800
rosa_wichuraiana Rw4G017710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 590
AciI CCGC 1 cut(s) 579
AclI AACGTT 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 723
AdeI CACNNNGTG 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 7 cut(s) 299, 530, 539, 614, 655, 785, 806
AjiI CACGTC 1 cut(s) 415
AluBI AGCT 8 cut(s) 40, 113, 179, 216, 270, 320, 336, 617
AluI AGCT 8 cut(s) 40, 113, 179, 216, 270, 320, 336, 617
Alw21I GWGCWC 3 cut(s) 218, 322, 350
Alw26I GTCTC 7 cut(s) 39, 199, 443, 538, 641, 647, 683
Alw44I GTGCAC 1 cut(s) 346
Ama87I CYCGRG 2 cut(s) 202, 431
ApaLI GTGCAC 1 cut(s) 346
ApeKI GCWGC 2 cut(s) 179, 182
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 1 cut(s) 592
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 69
AvaI CYCGRG 2 cut(s) 202, 431
AvrII CCTAGG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 350
BanII GRGCYC 3 cut(s) 218, 322, 488
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 3 cut(s) 218, 322, 350
BbvI GCAGC 2 cut(s) 166, 169
BccI CCATC 1 cut(s) 760
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 7 cut(s) 39, 199, 443, 538, 641, 647, 683
BfaI CTAG 2 cut(s) 51, 489
BisI GCNGC 2 cut(s) 180, 183
BlnI CCTAGG 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 337
BlsI GCNGC 2 cut(s) 181, 184
Bme1390I CCNGG 1 cut(s) 191
BmeT110I CYCGRG 2 cut(s) 202, 431
BmgBI CACGTC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 300
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpmI CTGGAG 2 cut(s) 206, 232
Bpu10I CCTNAGC 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 191
BsaI GGTCTC 2 cut(s) 199, 538
BsaJI CCNNGG 2 cut(s) 50, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 634
BseDI CCNNGG 2 cut(s) 50, 189
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 3 cut(s) 50, 264, 342
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 8 cut(s) 127, 232, 235, 238, 585, 737, 740, 743
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 2 cut(s) 166, 169
Bsh1236I CGCG 1 cut(s) 590
Bsh1285I CGRYCG 1 cut(s) 814
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 3 cut(s) 218, 322, 350
BsiHKCI CYCGRG 2 cut(s) 202, 431
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 7 cut(s) 39, 199, 443, 538, 641, 647, 683
BsmBI CGTCTC 2 cut(s) 641, 647
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 534
Bso31I GGTCTC 2 cut(s) 199, 538
BsoBI CYCGRG 2 cut(s) 202, 431
Bsp1286I GDGCHC 4 cut(s) 218, 322, 350, 488
Bsp143I GATC 2 cut(s) 493, 811
Bsp1720I GCTNAGC 1 cut(s) 337
BspACI CCGC 1 cut(s) 579
BspCNI CTCAG 3 cut(s) 49, 265, 343
BspFNI CGCG 1 cut(s) 590
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 241
BspTNI GGTCTC 2 cut(s) 199, 538
BsrDI GCAATG 1 cut(s) 634
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 50, 189
BssMI GATC 2 cut(s) 493, 811
BssT1I CCWWGG 1 cut(s) 50
Bst4CI ACNGT 4 cut(s) 10, 164, 554, 623
Bst6I CTCTTC 2 cut(s) 681, 729
BstDEI CTNAG 6 cut(s) 36, 65, 273, 323, 337, 351
BstF5I GGATG 1 cut(s) 611
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 2 cut(s) 496, 814
BstMAI GTCTC 7 cut(s) 39, 199, 443, 538, 641, 647, 683
BstMBI GATC 2 cut(s) 493, 811
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 4 cut(s) 46, 333, 415, 587
BstSCI CCNGG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 2 cut(s) 166, 169
BstV2I GAAGAC 1 cut(s) 300
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 1 cut(s) 611
BtsIMutI CAGTG 1 cut(s) 348
CciI TCATGA 1 cut(s) 573
CfoI GCGC 1 cut(s) 592
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 2 cut(s) 143, 574
DdeI CTNAG 6 cut(s) 36, 65, 273, 323, 337, 351
DpnI GATC 2 cut(s) 495, 813
DpnII GATC 2 cut(s) 493, 811
DraIII CACNNNGTG 1 cut(s) 554
Eam1104I CTCTTC 2 cut(s) 681, 729
EarI CTCTTC 2 cut(s) 681, 729
Ecl136II GAGCTC 2 cut(s) 216, 320
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 3 cut(s) 218, 322, 488
Eco31I GGTCTC 2 cut(s) 199, 538
Eco53kI GAGCTC 2 cut(s) 216, 320
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 2 cut(s) 202, 431
EcoICRI GAGCTC 2 cut(s) 216, 320
EcoT14I CCWWGG 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 536
EcoT38I GRGCYC 3 cut(s) 218, 322, 488
ErhI CCWWGG 1 cut(s) 50
Esp3I CGTCTC 2 cut(s) 641, 647
FaeI CATG 2 cut(s) 146, 577
FaiI YATR 4 cut(s) 144, 294, 518, 575
FaqI GGGAC 1 cut(s) 211
FatI CATG 2 cut(s) 142, 573
Fnu4HI GCNGC 2 cut(s) 180, 183
FokI GGATG 1 cut(s) 618
FriOI GRGCYC 3 cut(s) 218, 322, 488
Fsp4HI GCNGC 2 cut(s) 180, 183
FspBI CTAG 2 cut(s) 51, 489
GlaI GCGC 1 cut(s) 591
GluI GCNGC 2 cut(s) 180, 183
GsuI CTGGAG 2 cut(s) 206, 232
HapII CCGG 1 cut(s) 191
HhaI GCGC 1 cut(s) 592
Hin1II CATG 2 cut(s) 146, 577
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 7 cut(s) 134, 200, 355, 368, 427, 659, 842
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 4 cut(s) 199, 274, 362, 379
Hpy188III TCNNGA 4 cut(s) 574, 652, 792, 815
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 1 cut(s) 265
HpyCH4III ACNGT 4 cut(s) 10, 164, 554, 623
HpyCH4IV ACGT 3 cut(s) 301, 414, 458
HpyCH4V TGCA 4 cut(s) 146, 348, 418, 534
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 333, 415, 587
HpyF3I CTNAG 6 cut(s) 36, 65, 273, 323, 337, 351
HpySE526I ACGT 3 cut(s) 301, 414, 458
Hsp92II CATG 2 cut(s) 146, 577
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 2 cut(s) 493, 811
LmnI GCTCC 2 cut(s) 213, 245
LpnPI CCDG 8 cut(s) 196, 204, 222, 236, 344, 357, 714, 808
Lsp1109I GCAGC 2 cut(s) 166, 169
LweI GCATC 1 cut(s) 596
MaeI CTAG 2 cut(s) 51, 489
MaeII ACGT 3 cut(s) 301, 414, 458
MaeIII GTNAC 4 cut(s) 164, 287, 382, 599
MalI GATC 2 cut(s) 495, 813
MboI GATC 2 cut(s) 493, 811
MhlI GDGCHC 4 cut(s) 218, 322, 350, 488
MluCI AATT 1 cut(s) 835
MlyI GAGTC 3 cut(s) 128, 194, 653
Mph1103I ATGCAT 1 cut(s) 536
MseI TTAA 3 cut(s) 42, 59, 461
MslI CAYNNNNRTG 1 cut(s) 539
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 534
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 4 cut(s) 46, 333, 415, 587
NciI CCSGG 1 cut(s) 191
NdeII GATC 2 cut(s) 493, 811
NlaIII CATG 2 cut(s) 146, 577
NlaIV GGNNCC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 536
PaeR7I CTCGAG 1 cut(s) 202
PagI TCATGA 1 cut(s) 573
PctI GAATGC 1 cut(s) 534
PfeI GAWTC 4 cut(s) 355, 368, 427, 842
PkrI GCNGC 2 cut(s) 181, 184
Ple19I CGATCG 1 cut(s) 814
PleI GAGTC 3 cut(s) 128, 194, 653
PpsI GAGTC 3 cut(s) 128, 194, 653
Psp124BI GAGCTC 2 cut(s) 218, 322
Psp1406I AACGTT 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 241
PspXI VCTCGAGB 1 cut(s) 202
PvuI CGATCG 1 cut(s) 814
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 2 cut(s) 218, 322
SaqAI TTAA 3 cut(s) 42, 59, 461
SatI GCNGC 2 cut(s) 180, 183
Sau3AI GATC 2 cut(s) 493, 811
SchI GAGTC 3 cut(s) 128, 194, 653
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 4 cut(s) 218, 322, 350, 488
SfaNI GCATC 1 cut(s) 596
Sfr274I CTCGAG 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 835
SsiI CCGC 1 cut(s) 579
SspMI CTAG 2 cut(s) 51, 489
SstI GAGCTC 2 cut(s) 218, 322
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 4 cut(s) 10, 164, 554, 623
TaiI ACGT 3 cut(s) 304, 417, 461
TaqI TCGA 1 cut(s) 203
TasI AATT 1 cut(s) 835
TfiI GAWTC 4 cut(s) 355, 368, 427, 842
Tru1I TTAA 3 cut(s) 42, 59, 461
Tru9I TTAA 3 cut(s) 42, 59, 461
TscAI CASTG 1 cut(s) 355
TseI GCWGC 2 cut(s) 179, 182
TspDTI ATGAA 3 cut(s) 762, 768, 774
TspGWI ACGGA 5 cut(s) 294, 461, 576, 618, 629
TspRI CASTG 1 cut(s) 355
VneI GTGCAC 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 202
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 2 cut(s) 51, 489
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.