FvH4_4g14940

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014046
Physical Location & Seq
Reverse (-)
18536254 .. 18537261
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14940.t1

Sequence Viewer

Length: 1008 bp
ATGGCTACGATTGTGTGTCAAGGTTTACAGTCATGCCTACAGGAGCCACAACTTGTAGAGCCGAGAACACTAAGGCTAAAACTCTCTTCGCCTATACCCCATCATCTTTTTTCAGCAACACCCTTAGAACTAGGCTTCAAATCTTTTCTTTCATCCGAGTCTAACCACATAAAAGAGCTTAGTCATGAAGAGAAATGCCACCATGACAAACCCGCCACCAAGAACTCTGACTTGGGTGGCTGGAGTTTTCTCCAAGCTATCTCCAACAATAGCTCCCAACAGCAAAACCCTTCAACCCCGGTTTACAATAAGCGCTCGTCATCGGTTACTAGGCTGAATGAGAAGAGCTTGGAGCTGTGCACTGAAAACTTGGGCAATGAGACTGGCACCATTTTCATCGAAAACAGCATTTTCGATTCGAATGATGAGAATTTGGGGAAGAGGGATCAGCAGAAGAAGCAGAGTAAAAGCTTGGGAGGCAAGAAATCTTCTATTGTTCATAACTTTCCTCCTCCACTGACCACGATAAGCGGCTCGGAGTCTCTACAAGTCAGACCCCACAGGGAAGAAGGCCGGTTAATACTCAAGGCTGTCAAGTCCCCATTGACACAAACTTGTTTCCAAGCCGAGAGGAGCAACGGCCGCCTTAGGTTATGCTTTTCAAAAGACTTCTTTGCTCCTAGTTTTGACTTGGAGCCACAAACTGCAGCCAATCAAGAAGACATTGAAGCAAACAGTGGCGAGGATAATGAAAATGAAGGATACGAAAATGATGGTGATGCGGAACAAGAAGAACAAGAAGCGGGGGACATTGACAAAGTAGATTTGTTGGGAGAACAAGAAGGTCGGGTGTGTCTGATTGAGGAGCTGGAAGAAAATAGTCTGAAAGTCGGGGGTGAAGAGGGAATGGACAAGTTTGAACGACCAATAAGCAGATGCAAAGAAGGTGGTGAGCAAGAGAAGAAAGGGCTATTAAACTTTGAGCCTTTTAATTGGGTGGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

336

Amino Acids

37.37

Weight (kDa)

4.94

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 168 - 220 9.1e-22 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06020 AT5G19260
fragaria_vesca FvH4_4g14940
malus_domestica MD13G1186600.v1.1 MD16G1187300.v1.1
prunus_persica Prupe.1G154300_v2.0.a1
pyrus_communis pycom13g16150
rosa_chinensis RchiOBHm_Chr4g0417161
rosa_laevigata RLG00000007925
rosa_multiflora Rmu_sc0000646.1_g000019
rosa_roxburghii Rroxscaffold_5G00360980
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG209100 Rh4BG206000 Rh4CG220100 Rh4DG206800
rosa_wichuraiana Rw4G017710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AciI CCGC 5 cut(s) 213, 531, 643, 782, 803
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 640
AcsI RAATTY 1 cut(s) 430
AfeI AGCGCT 1 cut(s) 314
AgsI TTSAA 5 cut(s) 139, 294, 663, 728, 920
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 7 cut(s) 178, 257, 273, 348, 355, 471, 868
AluI AGCT 7 cut(s) 178, 257, 273, 348, 355, 471, 868
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 374, 546
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 1 cut(s) 453
Aor51HI AGCGCT 1 cut(s) 314
AoxI GGCC 2 cut(s) 571, 640
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 1 cut(s) 430
AspLEI GCGC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 3 cut(s) 788, 908, 962
AsuII TTCGAA 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 719
BccI CCATC 2 cut(s) 108, 767
BceAI ACGGC 1 cut(s) 655
BciVI GTATCC 1 cut(s) 755
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 374, 546
BfaI CTAG 3 cut(s) 131, 330, 681
BfmI CTRYAG 2 cut(s) 38, 705
BfoI RGCGCY 1 cut(s) 316
BfuI GTATCC 1 cut(s) 755
BisI GCNGC 3 cut(s) 532, 643, 708
BlsI GCNGC 3 cut(s) 533, 644, 709
Bme1390I CCNGG 1 cut(s) 299
BmiI GGNNCC 3 cut(s) 45, 388, 696
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 2 cut(s) 769, 926
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bse118I RCCGGY 1 cut(s) 573
Bse1I ACTGG 1 cut(s) 388
Bse21I CCTNAGG 1 cut(s) 647
Bse3DI GCAATG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 3 cut(s) 501, 646, 878
BseSI GKGCMC 1 cut(s) 362
BseX3I CGGCCG 1 cut(s) 640
BseXI GCAGC 1 cut(s) 719
Bsh1285I CGRYCG 1 cut(s) 643
BshFI GGCC 2 cut(s) 573, 642
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 643
BsiHKAI GWGCWC 1 cut(s) 362
BsiSI CCGG 2 cut(s) 299, 574
BslFI GGGAC 2 cut(s) 583, 821
BsmAI GTCTC 2 cut(s) 374, 546
BsmFI GGGAC 2 cut(s) 583, 821
BsnI GGCC 2 cut(s) 573, 642
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 445
BspACI CCGC 5 cut(s) 213, 531, 643, 782, 803
BspANI GGCC 2 cut(s) 573, 642
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 45, 388, 696
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 1 cut(s) 453
BspQI GCTCTTC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 573
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 1 cut(s) 573
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 445
Bst4CI ACNGT 2 cut(s) 30, 737
Bst6I CTCTTC 5 cut(s) 91, 183, 338, 434, 894
BstBI TTCGAA 1 cut(s) 419
BstDEI CTNAG 4 cut(s) 71, 124, 179, 647
BstF5I GGATG 1 cut(s) 152
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 2 cut(s) 374, 546
BstMBI GATC 1 cut(s) 445
BstMCI CGRYCG 1 cut(s) 643
BstMWI GCNNNNNNNGC 3 cut(s) 457, 477, 642
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 2 cut(s) 38, 705
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 719
BstV2I GAAGAC 1 cut(s) 726
BstZI CGGCCG 1 cut(s) 640
Bsu36I CCTNAGG 1 cut(s) 647
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 2 cut(s) 573, 642
BtsCI GGATG 1 cut(s) 152
BtsIMutI CAGTG 3 cut(s) 360, 515, 742
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 573
CspCI CAANNNNNGTGG 2 cut(s) 928, 963
CviAII CATG 3 cut(s) 33, 185, 203
DdeI CTNAG 4 cut(s) 71, 124, 179, 647
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 640
EagI CGGCCG 1 cut(s) 640
Eam1104I CTCTTC 5 cut(s) 91, 183, 338, 434, 894
EarI CTCTTC 5 cut(s) 91, 183, 338, 434, 894
EclXI CGGCCG 1 cut(s) 640
Eco47III AGCGCT 1 cut(s) 314
Eco52I CGGCCG 1 cut(s) 640
Eco81I CCTNAGG 1 cut(s) 647
FaeI CATG 3 cut(s) 36, 188, 206
FaiI YATR 7 cut(s) 34, 95, 170, 186, 204, 501, 655
FaqI GGGAC 2 cut(s) 583, 821
FatI CATG 3 cut(s) 32, 184, 202
FauI CCCGC 2 cut(s) 220, 796
Fnu4HI GCNGC 3 cut(s) 532, 643, 708
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 3 cut(s) 532, 643, 708
FspBI CTAG 3 cut(s) 131, 330, 681
GlaI GCGC 1 cut(s) 314
GluI GCNGC 3 cut(s) 532, 643, 708
GsuI CTGGAG 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 2 cut(s) 573, 642
HapII CCGG 2 cut(s) 299, 574
HhaI GCGC 1 cut(s) 315
Hin1II CATG 3 cut(s) 36, 188, 206
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 3 cut(s) 158, 416, 539
HpaII CCGG 2 cut(s) 299, 574
HphI GGTGA 3 cut(s) 788, 908, 962
Hpy166II GTNNAC 3 cut(s) 26, 304, 360
Hpy188I TCNGA 6 cut(s) 157, 229, 538, 554, 858, 885
Hpy188III TCNNGA 2 cut(s) 185, 716
Hpy8I GTNNAC 3 cut(s) 26, 304, 360
HpyAV CCTTC 5 cut(s) 300, 563, 752, 836, 938
HpyCH4III ACNGT 2 cut(s) 30, 737
HpyCH4V TGCA 3 cut(s) 360, 707, 939
HpyF10VI GCNNNNNNNGC 3 cut(s) 457, 477, 642
HpyF3I CTNAG 4 cut(s) 71, 124, 179, 647
Hsp92II CATG 3 cut(s) 36, 188, 206
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 445
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 7 cut(s) 43, 278, 352, 633, 682, 694, 865
LpnPI CCDG 7 cut(s) 26, 226, 312, 369, 547, 587, 854
Lsp1109I GCAGC 1 cut(s) 719
LweI GCATC 2 cut(s) 769, 926
MaeI CTAG 3 cut(s) 131, 330, 681
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 2 cut(s) 430, 991
MlyI GAGTC 2 cut(s) 167, 548
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 8 cut(s) 435, 470, 519, 522, 624, 736, 856, 895
MseI TTAA 4 cut(s) 578, 974, 990, 1006
MspI CCGG 2 cut(s) 299, 574
MspR9I CCNGG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 457, 477, 642
NciI CCSGG 1 cut(s) 299
NdeII GATC 1 cut(s) 445
NlaIII CATG 3 cut(s) 36, 188, 206
NlaIV GGNNCC 3 cut(s) 45, 388, 696
NmeAIII GCCGAG 2 cut(s) 87, 652
NspV TTCGAA 1 cut(s) 419
PagI TCATGA 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 533, 644, 709
PleI GAGTC 2 cut(s) 166, 547
PpsI GAGTC 2 cut(s) 166, 547
PspN4I GGNNCC 3 cut(s) 45, 388, 696
PstI CTGCAG 1 cut(s) 709
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 4 cut(s) 578, 974, 990, 1006
SatI GCNGC 3 cut(s) 532, 643, 708
Sau3AI GATC 1 cut(s) 445
SchI GAGTC 2 cut(s) 167, 548
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 362
SfaNI GCATC 2 cut(s) 769, 926
SfcI CTRYAG 2 cut(s) 38, 705
SfuI TTCGAA 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 2 cut(s) 430, 991
SsiI CCGC 5 cut(s) 213, 531, 643, 782, 803
SspMI CTAG 3 cut(s) 131, 330, 681
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 30, 737
TaqI TCGA 3 cut(s) 399, 414, 419
TasI AATT 2 cut(s) 430, 991
TauI GCSGC 2 cut(s) 534, 645
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 4 cut(s) 578, 974, 990, 1006
Tru9I TTAA 4 cut(s) 578, 974, 990, 1006
TscAI CASTG 3 cut(s) 367, 522, 742
TseI GCWGC 1 cut(s) 707
TspDTI ATGAA 6 cut(s) 141, 201, 385, 488, 765, 771
TspRI CASTG 3 cut(s) 367, 522, 742
VneI GTGCAC 1 cut(s) 358
XapI RAATTY 1 cut(s) 430
XspI CTAG 3 cut(s) 131, 330, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.